Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48494 * 109.47005 * 240.00473 * 3 2 1 5 5 H 1.48498 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47135 * 119.99957 * 3 2 1 7 7 C 1.37879 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99783 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.39993 * 120.00424 * 180.02562 * 10 9 7 12 12 C 1.38849 * 119.99515 * 179.97438 * 11 10 9 13 13 C 1.38144 * 120.03793 * 179.97438 * 12 11 10 14 14 C 1.38778 * 120.02009 * 0.03125 * 13 12 11 15 15 N 1.40175 * 120.00644 * 179.97438 * 14 13 12 16 16 C 1.46850 * 110.99947 * 64.20692 * 15 14 13 17 17 C 1.53038 * 109.52265 * 174.15927 * 16 15 14 18 18 C 1.53124 * 109.27498 * 59.17825 * 17 16 15 19 19 C 1.53116 * 109.16261 * 302.34691 * 18 17 16 20 20 C 1.46846 * 111.00014 * 299.99349 * 15 14 13 21 21 C 1.39044 * 119.98804 * 0.24574 * 14 13 12 22 22 F 1.35102 * 120.01606 * 179.70590 * 21 14 13 23 23 C 1.38258 * 119.95863 * 359.42915 * 21 14 13 24 24 H 0.97001 * 120.00264 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47157 * 60.00128 * 9 7 2 26 26 H 1.08999 * 109.47255 * 299.99903 * 9 7 2 27 27 H 0.97002 * 120.00055 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.98354 * 0.02562 * 12 11 10 29 29 H 1.07996 * 119.99275 * 180.02562 * 13 12 11 30 30 H 1.08997 * 109.46121 * 294.17767 * 16 15 14 31 31 H 1.08998 * 109.45908 * 54.14335 * 16 15 14 32 32 H 1.08997 * 109.50584 * 299.24135 * 17 16 15 33 33 H 1.08993 * 109.53535 * 179.13880 * 17 16 15 34 34 H 1.08998 * 109.51864 * 182.43673 * 18 17 16 35 35 H 1.09004 * 109.57244 * 62.28490 * 18 17 16 36 36 H 1.09004 * 109.50037 * 297.71201 * 19 18 17 37 37 H 1.08995 * 109.53474 * 177.61934 * 19 18 17 38 38 H 1.09000 * 109.46467 * 305.85963 * 20 15 14 39 39 H 1.09005 * 109.45639 * 65.83473 * 20 15 14 40 40 H 1.08000 * 120.00874 * 180.27655 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7366 -4.9325 -0.0025 12 6 2.6390 -5.9877 -0.0042 13 6 2.1796 -7.2905 -0.0045 14 6 0.8155 -7.5457 -0.0037 15 7 0.3497 -8.8678 -0.0044 16 6 0.7383 -9.5634 1.2291 17 6 0.0925 -10.9505 1.2591 18 6 0.5508 -11.7482 0.0350 19 6 0.1770 -10.9788 -1.2349 20 6 0.8202 -9.5909 -1.1927 21 6 -0.0891 -6.4897 -0.0078 22 9 -1.4172 -6.7375 -0.0130 23 6 0.3714 -5.1861 -0.0007 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 3.1568 -3.4354 -0.0028 28 1 3.7008 -5.7899 -0.0046 29 1 2.8822 -8.1107 -0.0054 30 1 1.8229 -9.6670 1.2613 31 1 0.4028 -8.9878 2.0917 32 1 -0.9924 -10.8474 1.2409 33 1 0.3931 -11.4729 2.1673 34 1 0.0595 -12.7211 0.0295 35 1 1.6315 -11.8860 0.0726 36 1 -0.9067 -10.8760 -1.2924 37 1 0.5380 -11.5208 -2.1090 38 1 0.5443 -9.0352 -2.0890 39 1 1.9045 -9.6944 -1.1490 40 1 -0.3305 -4.3653 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905446027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = -43.656070 kcal Electronic energy + Delta-G solvation = -21220.807158 eV Core-core repulsion = 17948.242626 eV Total energy + Delta-G solvation = -3272.564532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.74572 -40.96330 -39.30577 -36.65153 -34.89346 -33.59097 -31.73059 -31.52505 -30.00790 -27.87381 -25.41542 -24.51227 -23.93152 -23.24062 -22.24326 -20.42269 -19.41278 -18.29651 -17.82293 -17.43520 -16.62404 -16.59879 -16.19698 -15.73148 -15.69010 -15.33799 -15.02762 -14.96071 -14.83690 -14.32285 -14.30807 -14.04016 -13.73626 -13.29105 -13.08386 -13.05761 -12.87094 -12.67545 -12.45747 -12.11261 -12.06352 -11.58714 -11.49129 -11.38115 -11.24187 -10.95728 -10.51282 -9.77846 -9.37667 -8.32318 -8.25310 -6.47067 0.28816 0.45900 1.40658 1.43666 1.51949 2.32002 2.69275 2.70903 2.88596 3.03213 3.45361 3.84292 3.94364 4.02054 4.05447 4.26756 4.34900 4.37999 4.47674 4.52980 4.63852 4.72190 4.77677 4.93480 4.95461 5.02701 5.04104 5.11961 5.16300 5.24543 5.26051 5.28650 5.29306 5.41058 5.49825 5.53964 5.74452 5.86405 6.14216 6.34004 6.49538 6.67280 7.07866 7.26624 8.79307 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044351 B = 0.003253 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.180013 B = 8606.281988 C = 8901.165055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.269 3.731 10 N -0.725 5.725 11 C 0.238 3.762 12 C -0.197 4.197 13 C -0.059 4.059 14 C -0.022 4.022 15 N -0.506 5.506 16 C 0.060 3.940 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.114 4.114 20 C 0.059 3.941 21 C 0.154 3.846 22 F -0.144 7.144 23 C -0.257 4.257 24 H 0.269 0.731 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.404 0.596 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -21.951 0.056 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.094 0.906 9 C 0.146 3.854 10 N -0.350 5.350 11 C 0.129 3.871 12 C -0.220 4.220 13 C -0.079 4.079 14 C -0.119 4.119 15 N -0.228 5.228 16 C -0.067 4.067 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.067 4.067 21 C 0.133 3.867 22 F -0.123 7.123 23 C -0.282 4.282 24 H 0.078 0.922 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.240 0.760 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.522 -21.664 0.040 22.132 hybrid contribution 0.540 1.478 0.023 1.574 sum 5.063 -20.187 0.062 20.812 Atomic orbital electron populations 1.70082 1.07971 1.28631 1.49958 1.25957 0.95783 1.03566 0.93906 0.85289 0.78041 0.77086 0.79332 1.18918 1.20871 1.18926 1.21555 0.94125 0.91045 1.52903 0.90647 1.18607 0.88772 0.84118 0.93914 1.45244 1.09392 1.01956 1.78436 1.17967 0.91864 0.85965 0.91276 1.20745 0.99662 0.90779 1.10831 1.21327 0.94250 0.96795 0.95576 1.18391 0.91206 0.89605 1.12681 1.59399 1.60729 0.98749 1.03906 1.22195 0.98473 0.95287 0.90723 1.21599 1.00643 0.93698 0.99271 1.21568 1.01507 0.98640 0.93674 1.21598 1.00848 0.93793 0.98979 1.22203 0.97955 0.95016 0.91565 1.17401 0.76895 0.92299 1.00114 1.91415 1.32099 1.95112 1.93647 1.20490 0.95797 0.95450 1.16486 0.92194 0.99116 0.99099 0.76004 0.83240 0.82762 0.93425 0.92212 0.92303 0.89778 0.90507 0.91279 0.92309 0.89740 0.92091 0.93357 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.56 -30.26 9.28 25.60 0.24 -30.02 16 8 H 0.08 3.79 7.60 -2.91 -0.02 3.76 16 9 C 0.27 14.12 4.67 85.63 0.40 14.52 16 10 N -0.73 -30.33 5.74 -342.96 -1.97 -32.30 16 11 C 0.24 8.97 6.66 38.13 0.25 9.22 16 12 C -0.20 -5.69 9.89 22.39 0.22 -5.47 16 13 C -0.06 -1.52 8.70 22.38 0.19 -1.32 16 14 C -0.02 -0.66 4.70 38.13 0.18 -0.48 16 15 N -0.51 -13.08 4.46 -694.89 -3.10 -16.18 16 16 C 0.06 1.26 5.17 86.33 0.45 1.71 16 17 C -0.11 -1.88 6.09 30.65 0.19 -1.70 16 18 C -0.12 -1.59 6.00 30.67 0.18 -1.40 16 19 C -0.11 -1.87 6.09 30.64 0.19 -1.68 16 20 C 0.06 1.23 5.12 86.32 0.44 1.67 16 21 C 0.15 5.70 7.31 22.47 0.16 5.87 16 22 F -0.14 -5.63 17.07 44.97 0.77 -4.86 16 23 C -0.26 -10.54 9.29 22.42 0.21 -10.33 16 24 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 25 H -0.01 -0.52 7.95 -2.38 -0.02 -0.54 16 26 H -0.01 -0.51 7.95 -2.39 -0.02 -0.53 16 27 H 0.40 14.95 8.34 -92.71 -0.77 14.18 16 28 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 29 H 0.15 2.93 7.13 -2.91 -0.02 2.91 16 30 H 0.05 0.88 7.56 -2.39 -0.02 0.86 16 31 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 39 H 0.05 0.87 7.34 -2.38 -0.02 0.86 16 40 H 0.11 5.00 6.73 -2.91 -0.02 4.98 16 Total: -1.00 -63.05 327.85 2.04 -61.01 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.26 Total: 21.03 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 3.77 Total: -18.52 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.78 Total: -103.01 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.77 Total: -4.86 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -63.05 2.04 -61.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905446027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.356 kcal (2) G-P(sol) polarization free energy of solvation -63.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds