Wall clock time and date at job start Wed Apr 15 2020 11:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31936 * 119.60323 * 2 1 4 4 C 1.32033 * 121.68569 * 180.24497 * 3 2 1 5 5 F 1.35099 * 119.64957 * 179.75268 * 4 3 2 6 6 C 1.38562 * 120.69979 * 359.77124 * 4 3 2 7 7 C 1.38503 * 119.13886 * 359.97438 * 6 4 3 8 8 C 1.38110 * 119.59887 * 179.75609 * 2 1 3 9 9 C 1.50699 * 120.38278 * 0.02562 * 8 2 1 10 10 N 1.46898 * 109.46903 * 93.57474 * 9 8 2 11 11 C 1.46847 * 111.00407 * 76.00277 * 10 9 8 12 12 C 1.53033 * 109.52328 * 174.16132 * 11 10 9 13 13 C 1.53115 * 109.27955 * 59.18422 * 12 11 10 14 14 C 1.53120 * 109.15881 * 302.34232 * 13 12 11 15 15 H 1.09006 * 109.50472 * 297.71546 * 14 13 12 16 16 C 1.50702 * 109.50445 * 177.64036 * 14 13 12 17 17 H 1.08006 * 119.99286 * 275.02577 * 16 14 13 18 18 C 1.37872 * 120.00320 * 95.02483 * 16 14 13 19 19 N 1.31513 * 119.99529 * 184.80436 * 18 16 14 20 20 Si 1.86800 * 120.00061 * 4.80029 * 18 16 14 21 21 H 1.48500 * 109.46739 * 84.86812 * 20 18 16 22 22 H 1.48502 * 109.47147 * 204.86748 * 20 18 16 23 23 H 1.48493 * 109.47153 * 324.87106 * 20 18 16 24 24 C 1.46850 * 111.00119 * 311.79557 * 10 9 8 25 25 H 1.08993 * 109.46932 * 277.23896 * 1 2 3 26 26 H 1.09007 * 109.46718 * 37.23601 * 1 2 3 27 27 H 1.09000 * 109.47400 * 157.23117 * 1 2 3 28 28 H 1.08005 * 120.42979 * 180.02562 * 6 4 3 29 29 H 1.07999 * 120.77033 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47466 * 333.57279 * 9 8 2 31 31 H 1.09000 * 109.46694 * 213.56599 * 9 8 2 32 32 H 1.09004 * 109.46286 * 294.17924 * 11 10 9 33 33 H 1.09002 * 109.46372 * 54.14698 * 11 10 9 34 34 H 1.09008 * 109.50014 * 179.12083 * 12 11 10 35 35 H 1.08997 * 109.50723 * 299.23920 * 12 11 10 36 36 H 1.08992 * 109.52693 * 62.24854 * 13 12 11 37 37 H 1.09005 * 109.52233 * 182.37885 * 13 12 11 38 38 H 0.97003 * 119.99769 * 179.97438 * 19 18 16 39 39 H 1.09010 * 109.45581 * 305.85588 * 24 10 9 40 40 H 1.09001 * 109.46642 * 65.81883 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1471 0.0000 4 6 3.4782 1.1951 -0.0048 5 9 4.1034 2.3927 -0.0097 6 6 4.2285 0.0302 -0.0053 7 6 3.5766 -1.1918 -0.0001 8 6 2.1892 -1.2009 0.0051 9 6 1.4353 -2.5057 0.0101 10 7 1.2656 -2.9784 -1.3704 11 6 2.5168 -3.5448 -1.8903 12 6 2.2666 -4.1564 -3.2706 13 6 1.7435 -3.0722 -4.2167 14 6 0.4668 -2.4651 -3.6285 15 1 -0.3002 -3.2357 -3.5504 16 6 -0.0228 -1.3571 -4.5249 17 1 0.3772 -0.3595 -4.4181 18 6 -0.9813 -1.6167 -5.4814 19 7 -1.3400 -0.6742 -6.3255 20 14 -1.7701 -3.3072 -5.5783 21 1 -2.9043 -3.3796 -4.6225 22 1 -2.2689 -3.5424 -6.9571 23 1 -0.7643 -4.3434 -5.2323 24 6 0.7692 -1.9025 -2.2378 25 1 -0.3633 0.1295 1.0194 26 1 -0.3633 0.8182 -0.6219 27 1 -0.3634 -0.9476 -0.3977 28 1 5.3076 0.0745 -0.0088 29 1 4.1353 -2.1161 0.0000 30 1 0.4565 -2.3581 0.4665 31 1 1.9948 -3.2463 0.5815 32 1 3.2656 -2.7570 -1.9724 33 1 2.8758 -4.3175 -1.2104 34 1 3.1989 -4.5629 -3.6629 35 1 1.5280 -4.9537 -3.1870 36 1 2.4978 -2.2937 -4.3312 37 1 1.5240 -3.5125 -5.1894 38 1 -2.0141 -0.8570 -6.9987 39 1 -0.1413 -1.4823 -1.8102 40 1 1.5261 -1.1223 -2.3183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:49 Heat of formation + Delta-G solvation = -7.399061 kcal Electronic energy + Delta-G solvation = -22439.614582 eV Core-core repulsion = 19168.622271 eV Total energy + Delta-G solvation = -3270.992310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.98102 -40.70022 -38.27397 -34.48832 -33.26682 -32.61480 -31.05851 -30.26467 -28.04326 -26.07896 -25.06806 -23.24200 -22.64590 -21.47835 -20.96733 -18.79720 -17.86078 -17.09270 -16.90341 -16.12955 -15.83555 -15.26860 -14.64412 -14.23280 -14.19247 -14.02147 -13.72854 -13.44535 -13.20833 -12.96730 -12.87015 -12.51797 -12.35834 -12.08244 -11.98009 -11.75313 -11.33760 -11.12265 -10.95395 -10.66364 -10.25710 -9.92746 -9.79310 -9.70314 -9.53251 -9.33586 -8.96272 -8.69147 -8.49050 -7.94873 -6.07380 -4.07310 0.86869 1.08851 3.30641 3.38817 3.42208 3.47421 3.56351 4.33906 4.41139 4.43337 4.65460 4.73880 4.78979 5.18336 5.22140 5.39245 5.47086 5.52003 5.55704 5.59390 5.67859 5.78384 5.82210 5.87755 5.99711 6.07813 6.13280 6.17063 6.32405 6.36077 6.45149 6.60456 6.70432 6.78510 6.87431 7.25004 7.41488 7.48793 7.52898 7.68601 7.83507 8.52855 8.97614 9.55869 11.05841 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.005830 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.289065 B = 4801.188294 C = 5341.190587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.186 3.814 3 N -0.513 5.513 4 C 0.306 3.694 5 F -0.117 7.117 6 C -0.204 4.204 7 C -0.040 4.040 8 C -0.176 4.176 9 C 0.094 3.906 10 N -0.528 5.528 11 C 0.056 3.944 12 C -0.120 4.120 13 C -0.113 4.113 14 C 0.021 3.979 15 H 0.039 0.961 16 C -0.513 4.513 17 H 0.070 0.930 18 C 0.073 3.927 19 N -0.900 5.900 20 Si 0.878 3.122 21 H -0.275 1.275 22 H -0.292 1.292 23 H -0.263 1.263 24 C 0.062 3.938 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.642 -4.520 14.535 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 N -0.228 5.228 4 C 0.152 3.848 5 F -0.096 7.096 6 C -0.225 4.225 7 C -0.066 4.066 8 C -0.180 4.180 9 C -0.035 4.035 10 N -0.251 5.251 11 C -0.072 4.072 12 C -0.158 4.158 13 C -0.152 4.152 14 C 0.001 3.999 15 H 0.058 0.942 16 C -0.551 4.551 17 H 0.088 0.912 18 C -0.129 4.129 19 N -0.538 5.538 20 Si 0.706 3.294 21 H -0.201 1.201 22 H -0.218 1.218 23 H -0.188 1.188 24 C -0.064 4.064 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.117 0.883 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.725 -4.037 14.362 16.800 hybrid contribution 0.970 -0.454 -0.307 1.114 sum 8.695 -4.491 14.055 17.126 Atomic orbital electron populations 1.21225 0.87873 1.05657 1.03358 1.20916 0.96975 0.85965 0.91314 1.66820 1.08162 1.31769 1.16081 1.18105 0.87713 0.80829 0.98145 1.91606 1.80467 1.44170 1.93341 1.21729 1.01724 0.91794 1.07241 1.21360 0.93706 0.97638 0.93871 1.21605 0.94883 0.98483 1.03003 1.21306 0.99629 0.90062 0.92486 1.62529 1.28201 1.33456 1.00886 1.22111 0.90632 0.97636 0.96772 1.21680 1.00177 0.99341 0.94621 1.21878 0.99380 0.96136 0.97763 1.19159 0.93614 0.96231 0.90870 0.94248 1.20937 1.22142 0.95986 1.16034 0.91233 1.25049 0.96272 0.96623 0.94971 1.69917 1.31814 1.33416 1.18647 0.86839 0.80121 0.85500 0.76964 1.20119 1.21832 1.18792 1.22564 0.98569 0.90906 0.94392 0.90169 0.89488 0.88260 0.83823 0.84069 0.89144 0.90128 0.95266 0.91884 0.92914 0.91884 0.93408 0.92917 0.92675 0.90409 0.95595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.80 36.01 0.32 -1.35 16 2 C 0.19 2.79 5.82 -82.59 -0.48 2.31 16 3 N -0.51 -8.55 10.29 -9.81 -0.10 -8.65 16 4 C 0.31 4.65 8.41 -17.35 -0.15 4.50 16 5 F -0.12 -1.76 17.29 2.25 0.04 -1.72 16 6 C -0.20 -2.51 10.09 -39.36 -0.40 -2.91 16 7 C -0.04 -0.47 8.44 -39.30 -0.33 -0.80 16 8 C -0.18 -2.33 3.85 -104.48 -0.40 -2.73 16 9 C 0.09 1.15 5.28 -4.98 -0.03 1.13 16 10 N -0.53 -8.26 4.86 -236.11 -1.15 -9.40 16 11 C 0.06 0.82 5.04 -3.84 -0.02 0.80 16 12 C -0.12 -1.98 6.09 -26.65 -0.16 -2.14 16 13 C -0.11 -2.34 5.27 -26.61 -0.14 -2.48 16 14 C 0.02 0.47 1.92 -91.69 -0.18 0.29 16 15 H 0.04 0.93 5.30 -51.93 -0.28 0.65 16 16 C -0.51 -14.08 8.87 -34.44 -0.31 -14.39 16 17 H 0.07 2.12 8.06 -52.48 -0.42 1.69 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 20 Si 0.88 21.34 26.99 -169.99 -4.59 16.76 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.26 -6.13 6.82 56.52 0.39 -5.75 16 24 C 0.06 1.19 3.38 -3.84 -0.01 1.18 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.10 1.33 3.61 -51.93 -0.19 1.14 16 28 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.14 1.30 7.79 -52.49 -0.41 0.89 16 30 H 0.09 1.02 6.36 -51.93 -0.33 0.69 16 31 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 32 H 0.03 0.43 6.53 -51.93 -0.34 0.09 16 33 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 34 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.08 1.48 5.05 -51.92 -0.26 1.22 16 40 H 0.03 0.54 6.65 -51.93 -0.35 0.19 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -30.92 311.52 -8.21 -39.13 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.50 Total: 0.37 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.38 Total: -14.63 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.47 Total: -44.60 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.92 -8.21 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.733 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds