Wall clock time and date at job start Wed Apr 15 2020 11:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31936 * 119.60323 * 2 1 4 4 C 1.32033 * 121.68569 * 180.24497 * 3 2 1 5 5 F 1.35099 * 119.64957 * 179.75268 * 4 3 2 6 6 C 1.38562 * 120.69979 * 359.77124 * 4 3 2 7 7 C 1.38503 * 119.13886 * 359.97438 * 6 4 3 8 8 C 1.38110 * 119.59887 * 179.75609 * 2 1 3 9 9 C 1.50699 * 120.38278 * 0.02562 * 8 2 1 10 10 N 1.46898 * 109.46903 * 93.57474 * 9 8 2 11 11 C 1.46847 * 111.00407 * 76.00277 * 10 9 8 12 12 C 1.53033 * 109.52328 * 174.16132 * 11 10 9 13 13 C 1.53115 * 109.27955 * 59.18422 * 12 11 10 14 14 C 1.53120 * 109.15881 * 302.34232 * 13 12 11 15 15 H 1.09006 * 109.50472 * 297.71546 * 14 13 12 16 16 C 1.50702 * 109.50445 * 177.64036 * 14 13 12 17 17 H 1.08006 * 119.99286 * 275.02577 * 16 14 13 18 18 C 1.37872 * 120.00320 * 95.02483 * 16 14 13 19 19 N 1.31513 * 119.99529 * 184.80436 * 18 16 14 20 20 Si 1.86800 * 120.00061 * 4.80029 * 18 16 14 21 21 H 1.48500 * 109.46739 * 84.86812 * 20 18 16 22 22 H 1.48502 * 109.47147 * 204.86748 * 20 18 16 23 23 H 1.48493 * 109.47153 * 324.87106 * 20 18 16 24 24 C 1.46850 * 111.00119 * 311.79557 * 10 9 8 25 25 H 1.08993 * 109.46932 * 277.23896 * 1 2 3 26 26 H 1.09007 * 109.46718 * 37.23601 * 1 2 3 27 27 H 1.09000 * 109.47400 * 157.23117 * 1 2 3 28 28 H 1.08005 * 120.42979 * 180.02562 * 6 4 3 29 29 H 1.07999 * 120.77033 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47466 * 333.57279 * 9 8 2 31 31 H 1.09000 * 109.46694 * 213.56599 * 9 8 2 32 32 H 1.09004 * 109.46286 * 294.17924 * 11 10 9 33 33 H 1.09002 * 109.46372 * 54.14698 * 11 10 9 34 34 H 1.09008 * 109.50014 * 179.12083 * 12 11 10 35 35 H 1.08997 * 109.50723 * 299.23920 * 12 11 10 36 36 H 1.08992 * 109.52693 * 62.24854 * 13 12 11 37 37 H 1.09005 * 109.52233 * 182.37885 * 13 12 11 38 38 H 0.97003 * 119.99769 * 179.97438 * 19 18 16 39 39 H 1.09010 * 109.45581 * 305.85588 * 24 10 9 40 40 H 1.09001 * 109.46642 * 65.81883 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1471 0.0000 4 6 3.4782 1.1951 -0.0048 5 9 4.1034 2.3927 -0.0097 6 6 4.2285 0.0302 -0.0053 7 6 3.5766 -1.1918 -0.0001 8 6 2.1892 -1.2009 0.0051 9 6 1.4353 -2.5057 0.0101 10 7 1.2656 -2.9784 -1.3704 11 6 2.5168 -3.5448 -1.8903 12 6 2.2666 -4.1564 -3.2706 13 6 1.7435 -3.0722 -4.2167 14 6 0.4668 -2.4651 -3.6285 15 1 -0.3002 -3.2357 -3.5504 16 6 -0.0228 -1.3571 -4.5249 17 1 0.3772 -0.3595 -4.4181 18 6 -0.9813 -1.6167 -5.4814 19 7 -1.3400 -0.6742 -6.3255 20 14 -1.7701 -3.3072 -5.5783 21 1 -2.9043 -3.3796 -4.6225 22 1 -2.2689 -3.5424 -6.9571 23 1 -0.7643 -4.3434 -5.2323 24 6 0.7692 -1.9025 -2.2378 25 1 -0.3633 0.1295 1.0194 26 1 -0.3633 0.8182 -0.6219 27 1 -0.3634 -0.9476 -0.3977 28 1 5.3076 0.0745 -0.0088 29 1 4.1353 -2.1161 0.0000 30 1 0.4565 -2.3581 0.4665 31 1 1.9948 -3.2463 0.5815 32 1 3.2656 -2.7570 -1.9724 33 1 2.8758 -4.3175 -1.2104 34 1 3.1989 -4.5629 -3.6629 35 1 1.5280 -4.9537 -3.1870 36 1 2.4978 -2.2937 -4.3312 37 1 1.5240 -3.5125 -5.1894 38 1 -2.0141 -0.8570 -6.9987 39 1 -0.1413 -1.4823 -1.8102 40 1 1.5261 -1.1223 -2.3183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826861346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:48 Heat of formation + Delta-G solvation = -28.436860 kcal Electronic energy + Delta-G solvation = -22440.526849 eV Core-core repulsion = 19168.622271 eV Total energy + Delta-G solvation = -3271.904578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -50.10636 -41.78162 -39.59680 -35.96427 -34.48737 -34.22128 -32.48662 -31.76120 -29.16223 -27.20436 -26.93055 -24.47272 -23.73110 -22.90241 -22.28599 -20.33851 -18.99233 -18.93807 -18.14923 -17.32806 -17.04510 -16.59473 -15.90642 -15.82157 -15.37530 -15.23393 -14.89595 -14.82318 -14.59740 -14.43959 -14.23867 -14.04123 -13.54916 -13.24950 -13.17040 -13.01668 -12.90992 -12.70849 -12.39411 -12.18222 -11.78662 -11.71854 -11.26241 -11.03609 -10.95021 -10.77720 -10.73481 -10.60440 -9.75437 -9.19089 -8.28087 -6.32377 -0.18098 0.09387 1.37858 1.38411 1.50623 2.37136 2.41501 2.51635 3.05213 3.18955 3.42254 3.67272 3.77645 3.83761 4.16079 4.19398 4.26909 4.32504 4.47360 4.51060 4.55747 4.63846 4.66490 4.75181 4.85856 4.89419 4.91703 4.97041 4.98355 5.09662 5.11632 5.21379 5.27525 5.30196 5.58834 5.62543 5.66643 5.79089 6.13969 6.28425 6.39270 6.61818 6.76570 7.34257 8.89394 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019449 B = 0.005830 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.289065 B = 4801.188294 C = 5341.190587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.162 3.838 3 N -0.553 5.553 4 C 0.276 3.724 5 F -0.126 7.126 6 C -0.193 4.193 7 C -0.034 4.034 8 C -0.176 4.176 9 C 0.095 3.905 10 N -0.529 5.529 11 C 0.054 3.946 12 C -0.114 4.114 13 C -0.113 4.113 14 C 0.017 3.983 15 H 0.039 0.961 16 C -0.515 4.515 17 H 0.018 0.982 18 C 0.011 3.989 19 N -0.954 5.954 20 Si 0.947 3.053 21 H -0.264 1.264 22 H -0.292 1.292 23 H -0.242 1.242 24 C 0.080 3.920 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.176 0.824 29 H 0.181 0.819 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.029 0.971 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.072 0.928 40 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.067 -8.377 16.686 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.025 3.975 3 N -0.269 5.269 4 C 0.122 3.878 5 F -0.105 7.105 6 C -0.214 4.214 7 C -0.060 4.060 8 C -0.180 4.180 9 C -0.032 4.032 10 N -0.251 5.251 11 C -0.073 4.073 12 C -0.152 4.152 13 C -0.151 4.151 14 C -0.002 4.002 15 H 0.057 0.943 16 C -0.553 4.553 17 H 0.037 0.963 18 C -0.186 4.186 19 N -0.594 5.594 20 Si 0.771 3.229 21 H -0.188 1.188 22 H -0.219 1.219 23 H -0.166 1.166 24 C -0.048 4.048 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.193 0.807 29 H 0.198 0.802 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.047 0.953 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 9.170 -7.902 16.543 20.499 hybrid contribution 0.592 0.859 -0.969 1.424 sum 9.762 -7.043 15.574 19.684 Atomic orbital electron populations 1.21193 0.87719 1.04518 1.04316 1.21184 0.97472 0.86527 0.92354 1.66700 1.09466 1.33240 1.17455 1.18528 0.87807 0.81633 0.99786 1.91575 1.80456 1.44872 1.93598 1.22090 1.03182 0.90839 1.05295 1.21837 0.93239 0.98807 0.92076 1.21780 0.95784 0.98090 1.02340 1.21479 1.00845 0.90303 0.90609 1.62439 1.29321 1.31646 1.01720 1.22252 0.89920 0.98645 0.96528 1.21638 1.01297 0.97571 0.94679 1.21751 0.97934 0.97210 0.98229 1.19136 0.94523 0.94466 0.92110 0.94301 1.21234 1.21719 0.95440 1.16916 0.96350 1.25979 0.97028 1.01063 0.94509 1.70087 1.33151 1.36176 1.19999 0.85739 0.79638 0.80501 0.77061 1.18847 1.21897 1.16561 1.22122 0.98055 0.91207 0.93371 0.87776 0.92022 0.88226 0.80703 0.80157 0.88303 0.86185 0.95274 0.87401 0.90199 0.91584 0.95016 0.94636 0.92658 0.90942 0.97958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.30 8.80 71.24 0.63 -2.67 16 2 C 0.16 4.83 5.82 42.51 0.25 5.08 16 3 N -0.55 -18.92 10.29 -184.94 -1.90 -20.82 16 4 C 0.28 8.38 8.41 84.74 0.71 9.09 16 5 F -0.13 -3.89 17.29 44.97 0.78 -3.11 16 6 C -0.19 -4.31 10.09 22.41 0.23 -4.08 16 7 C -0.03 -0.67 8.44 22.45 0.19 -0.48 16 8 C -0.18 -4.20 3.85 -19.77 -0.08 -4.28 16 9 C 0.10 1.93 5.28 85.56 0.45 2.38 16 10 N -0.53 -14.56 4.86 -900.93 -4.38 -18.94 16 11 C 0.05 1.29 5.04 86.32 0.43 1.72 16 12 C -0.11 -3.28 6.09 30.64 0.19 -3.09 16 13 C -0.11 -4.55 5.27 30.67 0.16 -4.39 16 14 C 0.02 0.76 1.92 -11.49 -0.02 0.74 16 15 H 0.04 1.76 5.30 -2.38 -0.01 1.75 16 16 C -0.51 -29.55 8.87 25.60 0.23 -29.32 16 17 H 0.02 1.20 8.06 -2.91 -0.02 1.17 16 18 C 0.01 0.63 5.47 84.65 0.46 1.09 16 19 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 20 Si 0.95 44.29 26.99 68.60 1.85 46.14 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 23 H -0.24 -10.41 6.82 99.48 0.68 -9.73 16 24 C 0.08 3.02 3.38 86.32 0.29 3.31 16 25 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 27 H 0.10 2.66 3.61 -2.39 -0.01 2.65 16 28 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.18 2.15 7.79 -2.91 -0.02 2.13 16 30 H 0.10 1.87 6.36 -2.39 -0.02 1.85 16 31 H 0.12 1.58 7.85 -2.39 -0.02 1.56 16 32 H 0.03 0.72 6.53 -2.38 -0.02 0.70 16 33 H 0.11 1.74 7.96 -2.39 -0.02 1.72 16 34 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.07 2.78 5.05 -2.38 -0.01 2.77 16 40 H 0.00 0.09 6.65 -2.39 -0.02 0.08 16 Total: -1.00 -72.69 311.52 1.79 -70.90 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.02 Total: 10.98 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 4.12 Total: -24.88 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -5.98 Total: -100.03 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.85 Total: 46.14 kcal Total: -72.69 1.79 -70.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.464 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds