Wall clock time and date at job start Wed Apr 15 2020 11:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31934 * 119.60155 * 2 1 4 4 C 1.32031 * 121.68975 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.64797 * 180.02562 * 4 3 2 6 6 C 1.38556 * 120.69856 * 359.97438 * 4 3 2 7 7 C 1.38508 * 119.13632 * 359.76906 * 6 4 3 8 8 C 1.38105 * 119.59849 * 180.02562 * 2 1 3 9 9 C 1.50694 * 120.39108 * 359.97438 * 8 2 1 10 10 N 1.46907 * 109.47035 * 79.99584 * 9 8 2 11 11 C 1.46842 * 110.99676 * 66.04843 * 10 9 8 12 12 C 1.53036 * 109.52190 * 185.84074 * 11 10 9 13 13 C 1.53123 * 109.27788 * 300.81892 * 12 11 10 14 14 C 1.53123 * 109.16001 * 57.65365 * 13 12 11 15 15 H 1.08998 * 109.53365 * 62.30832 * 14 13 12 16 16 C 1.50697 * 109.50101 * 182.40587 * 14 13 12 17 17 H 1.07998 * 119.99675 * 119.80966 * 16 14 13 18 18 C 1.37883 * 120.00267 * 299.80295 * 16 14 13 19 19 N 1.31512 * 119.99590 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00229 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47229 * 59.99401 * 20 18 16 22 22 H 1.48498 * 109.47177 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46793 * 299.99753 * 20 18 16 24 24 C 1.46848 * 110.99958 * 190.25905 * 10 9 8 25 25 H 1.09000 * 109.47324 * 269.98033 * 1 2 3 26 26 H 1.08997 * 109.47081 * 29.98042 * 1 2 3 27 27 H 1.08995 * 109.46908 * 149.98502 * 1 2 3 28 28 H 1.08001 * 120.43448 * 180.02562 * 6 4 3 29 29 H 1.08003 * 120.77075 * 180.23515 * 7 6 4 30 30 H 1.09004 * 109.47123 * 320.00292 * 9 8 2 31 31 H 1.08994 * 109.47434 * 199.99810 * 9 8 2 32 32 H 1.09002 * 109.46766 * 65.82407 * 11 10 9 33 33 H 1.09000 * 109.46420 * 305.85141 * 11 10 9 34 34 H 1.09000 * 109.50632 * 60.76184 * 12 11 10 35 35 H 1.09006 * 109.50216 * 180.87978 * 12 11 10 36 36 H 1.09000 * 109.52561 * 177.56017 * 13 12 11 37 37 H 1.09007 * 109.52268 * 297.75177 * 13 12 11 38 38 H 0.97005 * 119.99751 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.46014 * 294.17985 * 24 10 9 40 40 H 1.08995 * 109.46374 * 54.14015 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1471 0.0000 4 6 3.4781 1.1952 0.0005 5 9 4.1032 2.3930 0.0010 6 6 4.2284 0.0304 0.0016 7 6 3.5766 -1.1917 0.0070 8 6 2.1891 -1.2008 -0.0005 9 6 1.4354 -2.5057 -0.0005 10 7 0.9816 -2.8091 -1.3644 11 6 2.1219 -3.0643 -2.2538 12 6 1.6223 -3.2321 -3.6905 13 6 0.6341 -4.4003 -3.7490 14 6 -0.5191 -4.1320 -2.7779 15 1 -1.0518 -3.2318 -3.0845 16 6 -1.4662 -5.3042 -2.7856 17 1 -1.6496 -5.8561 -1.8755 18 6 -2.0986 -5.6720 -3.9543 19 7 -1.8749 -5.0002 -5.0625 20 14 -3.2731 -7.1245 -3.9635 21 1 -4.3885 -6.8652 -3.0182 22 1 -3.8180 -7.3117 -5.3322 23 1 -2.5466 -8.3511 -3.5474 24 6 0.0425 -3.9381 -1.3677 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5140 28 1 5.3076 0.0747 0.0024 29 1 4.1353 -2.1159 0.0118 30 1 0.5722 -2.4268 0.6604 31 1 2.0900 -3.3034 0.3504 32 1 2.6323 -3.9743 -1.9382 33 1 2.8148 -2.2243 -2.2061 34 1 1.1240 -2.3174 -4.0118 35 1 2.4672 -3.4370 -4.3480 36 1 0.2427 -4.4961 -4.7617 37 1 1.1423 -5.3219 -3.4652 38 1 -2.3201 -5.2587 -5.8846 39 1 0.5626 -4.8439 -1.0561 40 1 -0.7746 -3.7327 -0.6763 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826861347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:52 Heat of formation + Delta-G solvation = -15.617489 kcal Electronic energy + Delta-G solvation = -21783.172319 eV Core-core repulsion = 18511.823631 eV Total energy + Delta-G solvation = -3271.348688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -49.04891 -40.47526 -38.14946 -34.43163 -33.17330 -32.59564 -31.03067 -29.87611 -27.92199 -25.91735 -24.95604 -22.92901 -22.55217 -21.72670 -20.90207 -18.68184 -17.88341 -17.11359 -16.49138 -16.14495 -15.56126 -15.16191 -14.53923 -14.42700 -14.16482 -13.75551 -13.62725 -13.52858 -13.23738 -12.94835 -12.55245 -12.31265 -12.08398 -12.05861 -11.94102 -11.65235 -11.25072 -10.95551 -10.73145 -10.71006 -10.20960 -9.93840 -9.85800 -9.73151 -9.50019 -9.14276 -8.75195 -8.72757 -8.32925 -7.78273 -5.99764 -4.06377 0.84283 1.04370 3.30433 3.35804 3.37450 3.43982 3.50408 4.32809 4.40198 4.52602 4.65379 4.73884 4.84019 5.21290 5.30400 5.48818 5.52752 5.60563 5.66665 5.71009 5.75317 5.78997 5.93567 6.02635 6.13932 6.20386 6.24873 6.34100 6.44480 6.61177 6.66602 6.70322 6.90306 7.16936 7.33540 7.55986 7.64336 7.68940 7.74422 8.04095 8.14182 8.44211 8.97467 9.58201 11.06097 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035263 B = 0.003862 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.847493 B = 7248.792030 C = 7437.207923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.190 3.810 3 N -0.518 5.518 4 C 0.302 3.698 5 F -0.118 7.118 6 C -0.203 4.203 7 C -0.043 4.043 8 C -0.130 4.130 9 C 0.095 3.905 10 N -0.532 5.532 11 C 0.063 3.937 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.056 3.944 15 H 0.035 0.965 16 C -0.517 4.517 17 H 0.053 0.947 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.067 3.933 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.024 0.976 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.260 0.740 39 H 0.021 0.979 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.237 7.038 9.798 15.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.052 3.948 3 N -0.233 5.233 4 C 0.148 3.852 5 F -0.097 7.097 6 C -0.225 4.225 7 C -0.069 4.069 8 C -0.132 4.132 9 C -0.033 4.033 10 N -0.257 5.257 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.053 0.947 16 C -0.556 4.556 17 H 0.071 0.929 18 C -0.137 4.137 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.059 4.059 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.494 8.264 9.420 15.721 hybrid contribution 0.623 -1.929 0.209 2.038 sum 10.117 6.334 9.629 15.336 Atomic orbital electron populations 1.20927 0.87561 1.05466 1.03049 1.20905 0.97097 0.85683 0.91104 1.66861 1.08131 1.31834 1.16448 1.18109 0.87759 0.80778 0.98550 1.91602 1.80518 1.44195 1.93416 1.21709 1.01708 0.91679 1.07377 1.21421 0.93789 0.97733 0.93968 1.20752 0.93880 0.96880 1.01734 1.20955 0.98242 0.91414 0.92718 1.62040 1.15609 1.42226 1.05783 1.22054 0.91895 0.98027 0.94561 1.21671 0.99032 1.01231 0.93550 1.21662 0.95101 0.93607 1.04495 1.18655 0.92676 0.97094 0.87852 0.94682 1.21095 1.25227 1.14179 0.95073 0.92882 1.24925 0.96584 0.96575 0.95655 1.69879 1.42952 1.39992 0.99779 0.86695 0.81382 0.83082 0.77028 1.20285 1.21331 1.20409 1.22358 0.93254 0.88540 1.01769 0.90458 0.90438 0.87769 0.83830 0.84045 0.89453 0.94187 0.95787 0.92585 0.92126 0.93591 0.89119 0.95169 0.92973 0.96087 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.43 36.01 0.34 -1.06 16 2 C 0.19 2.62 6.78 -82.60 -0.56 2.06 16 3 N -0.52 -7.74 10.29 -9.81 -0.10 -7.84 16 4 C 0.30 4.09 8.41 -17.35 -0.15 3.94 16 5 F -0.12 -1.58 17.29 2.25 0.04 -1.55 16 6 C -0.20 -2.24 10.09 -39.36 -0.40 -2.64 16 7 C -0.04 -0.48 8.77 -39.29 -0.34 -0.82 16 8 C -0.13 -1.66 4.58 -104.49 -0.48 -2.13 16 9 C 0.10 1.25 4.23 -4.98 -0.02 1.23 16 10 N -0.53 -8.80 3.98 -236.12 -0.94 -9.75 16 11 C 0.06 1.03 5.27 -3.84 -0.02 1.01 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 13 C -0.11 -2.52 5.03 -26.60 -0.13 -2.65 16 14 C 0.06 1.33 2.26 -91.69 -0.21 1.12 16 15 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.52 -13.63 8.56 -34.44 -0.29 -13.92 16 17 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.76 11.36 55.43 0.63 -24.13 16 20 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.07 1.30 4.68 -3.84 -0.02 1.29 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.10 1.42 6.33 -51.93 -0.33 1.09 16 28 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 29 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.09 1.07 7.13 -51.93 -0.37 0.70 16 31 H 0.04 0.49 8.01 -51.93 -0.42 0.08 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.85 6.34 -51.93 -0.33 0.52 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 2.34 6.16 -51.93 -0.32 2.02 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -28.17 322.55 -9.02 -37.19 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.95 Total: -1.19 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -2.54 Total: -13.32 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: -0.41 Total: -41.72 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.17 -9.02 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826861347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.576 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds