Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86804 * 120.00523 * 2 1 4 4 H 1.48498 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.46913 * 299.99719 * 3 2 1 6 6 H 1.48498 * 109.46866 * 59.99715 * 3 2 1 7 7 C 1.40029 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.41320 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.40591 * 119.78249 * 179.97438 * 9 7 2 11 11 C 1.38344 * 119.14256 * 179.97438 * 10 9 7 12 12 C 1.38647 * 118.68276 * 359.73497 * 11 10 9 13 13 C 1.39743 * 119.48852 * 0.55529 * 12 11 10 14 14 N 1.38835 * 119.58576 * 179.70937 * 13 12 11 15 15 C 1.46499 * 119.99762 * 359.72276 * 14 13 12 16 16 C 1.52992 * 109.47267 * 180.02562 * 15 14 13 17 17 C 1.53005 * 109.47259 * 295.00054 * 16 15 14 18 18 C 1.52992 * 109.47259 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47321 * 60.00048 * 18 17 16 20 20 F 1.39898 * 109.46965 * 60.00097 * 19 18 17 21 21 C 1.53003 * 109.47150 * 299.99869 * 19 18 17 22 22 C 1.53002 * 109.46869 * 59.99804 * 21 19 18 23 23 N 1.31983 * 120.83526 * 359.42853 * 13 12 11 24 24 H 0.97002 * 119.99060 * 0.02562 * 1 2 3 25 25 H 1.07990 * 120.42914 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.65923 * 180.02562 * 11 10 9 27 27 H 1.07994 * 120.25311 * 180.28007 * 12 11 10 28 28 H 0.96999 * 120.00254 * 179.72796 * 14 13 12 29 29 H 1.09004 * 109.47024 * 300.00678 * 15 14 13 30 30 H 1.09005 * 109.47136 * 60.00294 * 15 14 13 31 31 H 1.09000 * 109.47049 * 55.00249 * 16 15 14 32 32 H 1.09006 * 109.46887 * 299.99848 * 17 16 15 33 33 H 1.08995 * 109.47105 * 59.99669 * 17 16 15 34 34 H 1.09000 * 109.47049 * 300.00195 * 18 17 16 35 35 H 1.08998 * 109.47021 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47100 * 179.97438 * 19 18 17 37 37 H 1.09006 * 109.47009 * 300.00170 * 21 19 18 38 38 H 1.08995 * 109.47341 * 180.02562 * 21 19 18 39 39 H 1.08998 * 109.46989 * 180.02562 * 22 21 19 40 40 H 1.09000 * 109.47009 * 59.99920 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3462 0.0006 5 1 1.8830 2.3963 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2128 0.0010 9 6 1.3008 -2.4366 0.0005 10 6 2.0083 -3.6515 0.0005 11 6 1.3032 -4.8417 0.0011 12 6 -0.0824 -4.7943 0.0072 13 6 -0.7283 -3.5551 0.0009 14 7 -2.1158 -3.5053 0.0009 15 6 -2.8933 -4.7470 0.0014 16 6 -4.3865 -4.4138 0.0007 17 6 -4.7519 -3.7069 1.3075 18 6 -6.2450 -3.3731 1.3065 19 6 -7.0562 -4.6642 1.1810 20 9 -6.7668 -5.5037 2.2620 21 6 -6.6909 -5.3712 -0.1258 22 6 -5.1977 -5.7050 -0.1248 23 7 -0.0361 -2.4314 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 3.0882 -3.6555 0.0001 26 1 1.8218 -5.7891 0.0015 27 1 -0.6581 -5.7080 0.0124 28 1 -2.5704 -2.6485 0.0005 29 1 -2.6505 -5.3280 -0.8883 30 1 -2.6506 -5.3273 0.8917 31 1 -4.6124 -3.7599 -0.8416 32 1 -4.5260 -4.3608 2.1498 33 1 -4.1744 -2.7868 1.3967 34 1 -6.4705 -2.7190 0.4642 35 1 -6.5052 -2.8691 2.2373 36 1 -8.1200 -4.4264 1.1807 37 1 -6.9164 -4.7170 -0.9681 38 1 -7.2691 -6.2907 -0.2155 39 1 -4.9373 -6.2081 -1.0560 40 1 -4.9722 -6.3590 0.7175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326017240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = -54.148062 kcal Electronic energy + Delta-G solvation = -21351.840283 eV Core-core repulsion = 18078.820784 eV Total energy + Delta-G solvation = -3273.019499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.56299 -40.25255 -39.18713 -36.39039 -35.07651 -32.60548 -32.01227 -31.83208 -30.10870 -27.28219 -26.27759 -23.80184 -23.41579 -22.57181 -21.78688 -20.58211 -19.24486 -18.09375 -17.32984 -16.74803 -16.58220 -16.41680 -16.23556 -15.97097 -15.43286 -15.14782 -14.88094 -14.48614 -14.30820 -14.19779 -13.74749 -13.64071 -13.15354 -12.97454 -12.79998 -12.73072 -12.66775 -12.57567 -12.26675 -12.18364 -11.97538 -11.71372 -11.52876 -11.28765 -11.02377 -10.94515 -10.63407 -9.83079 -9.44551 -8.27807 -8.22682 -6.47913 1.05807 1.34510 1.41828 1.57058 1.57606 2.25552 2.67770 2.92888 3.56147 3.60793 3.70493 3.93690 4.02831 4.10405 4.17283 4.25801 4.37589 4.40002 4.48196 4.52518 4.70352 4.74118 4.82616 4.85601 4.98518 5.00476 5.03613 5.07015 5.08541 5.13879 5.18499 5.32849 5.33661 5.40068 5.51362 5.72116 5.96733 6.07681 6.23614 6.56962 6.84676 6.96257 7.23471 8.34936 8.51873 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.003951 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.702497 B = 7085.446422 C = 8010.965432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.259 3.741 10 C -0.344 4.344 11 C -0.030 4.030 12 C -0.370 4.370 13 C 0.393 3.607 14 N -0.731 5.731 15 C 0.145 3.855 16 C -0.086 4.086 17 C -0.114 4.114 18 C -0.142 4.142 19 C 0.085 3.915 20 F -0.232 7.232 21 C -0.139 4.139 22 C -0.110 4.110 23 N -0.565 5.565 24 H 0.276 0.724 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.393 0.607 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.076 -5.957 -0.595 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.131 3.869 10 C -0.367 4.367 11 C -0.054 4.054 12 C -0.395 4.395 13 C 0.152 3.848 14 N -0.366 5.366 15 C 0.021 3.979 16 C -0.105 4.105 17 C -0.152 4.152 18 C -0.180 4.180 19 C 0.049 3.951 20 F -0.213 7.213 21 C -0.177 4.177 22 C -0.148 4.148 23 N -0.288 5.288 24 H 0.086 0.914 25 H 0.120 0.880 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.227 0.773 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.729 -5.293 -0.566 16.605 hybrid contribution 0.984 0.080 0.249 1.018 sum -14.745 -5.213 -0.318 15.643 Atomic orbital electron populations 1.70260 1.08785 1.28591 1.29807 1.26956 0.95743 1.04328 0.92486 0.85106 0.79392 0.76109 0.78722 1.17928 1.19058 1.19177 1.19969 0.94590 0.90521 1.45313 0.89614 1.18698 0.87729 0.93195 0.87250 1.21692 0.98978 0.93791 1.22267 1.21004 0.93701 0.97192 0.93548 1.20951 0.95015 0.96105 1.27476 1.19007 0.86142 0.90261 0.89376 1.44324 1.01286 1.08308 1.82688 1.21282 0.90561 0.85856 1.00196 1.21306 0.92278 0.98405 0.98484 1.21492 0.96344 1.00101 0.97267 1.22128 0.94458 0.97231 1.04160 1.21822 1.00948 0.88666 0.83643 1.92762 1.95496 1.74253 1.58827 1.22117 0.96166 1.02320 0.97063 1.21456 0.94584 0.95910 1.02863 1.68203 1.07953 1.26017 1.26579 0.91355 0.87971 0.85377 0.86668 0.77277 0.92732 0.93731 0.89950 0.92980 0.92903 0.88542 0.90889 0.87669 0.88384 0.89580 0.90144 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.26 11.46 21.84 0.25 -41.01 16 2 C 0.03 1.39 5.50 85.29 0.47 1.86 16 3 Si 0.99 39.13 29.56 68.60 2.03 41.16 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.47 -26.75 9.14 23.46 0.21 -26.54 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 9 C 0.26 15.13 6.55 40.19 0.26 15.40 16 10 C -0.34 -18.12 9.83 22.87 0.22 -17.90 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 12 C -0.37 -17.31 9.34 22.73 0.21 -17.09 16 13 C 0.39 19.82 7.65 133.39 1.02 20.84 16 14 N -0.73 -29.69 5.45 -345.01 -1.88 -31.57 16 15 C 0.15 4.48 4.27 86.38 0.37 4.85 16 16 C -0.09 -1.99 2.22 -10.79 -0.02 -2.02 16 17 C -0.11 -2.79 4.95 30.59 0.15 -2.63 16 18 C -0.14 -2.57 5.72 30.59 0.17 -2.39 16 19 C 0.09 1.38 4.12 30.60 0.13 1.50 16 20 F -0.23 -5.33 16.05 44.97 0.72 -4.61 16 21 C -0.14 -1.95 5.72 30.60 0.17 -1.78 16 22 C -0.11 -2.04 5.08 30.60 0.16 -1.88 16 23 N -0.56 -32.62 7.89 -186.59 -1.47 -34.09 16 24 H 0.28 13.58 8.29 -92.71 -0.77 12.82 16 25 H 0.10 5.02 8.06 -2.92 -0.02 4.99 16 26 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 27 H 0.12 4.69 6.68 -2.91 -0.02 4.67 16 28 H 0.39 16.05 7.77 -92.71 -0.72 15.33 16 29 H 0.05 1.65 7.93 -2.38 -0.02 1.63 16 30 H 0.04 1.44 7.91 -2.38 -0.02 1.42 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.42 7.80 -2.38 -0.02 1.41 16 33 H 0.05 1.50 7.18 -2.39 -0.02 1.48 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.25 7.80 -2.39 -0.02 1.23 16 Total: -1.00 -67.26 324.29 3.72 -63.54 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.31 Total: 35.55 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 3.76 Total: -28.97 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.10 Total: -106.66 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.72 Total: -4.61 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -67.26 3.72 -63.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326017240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.389 kcal (2) G-P(sol) polarization free energy of solvation -67.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds