Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47316 * 269.99805 * 3 2 1 5 5 H 1.48507 * 109.47149 * 30.00195 * 3 2 1 6 6 H 1.48503 * 109.47142 * 149.99677 * 3 2 1 7 7 C 1.40027 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00417 * 180.02562 * 7 2 1 9 9 C 1.41323 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.40597 * 119.78242 * 180.27343 * 9 7 2 11 11 C 1.38343 * 119.14470 * 180.20592 * 10 9 7 12 12 C 1.38643 * 118.68350 * 359.52161 * 11 10 9 13 13 C 1.39763 * 119.48669 * 0.25902 * 12 11 10 14 14 N 1.38828 * 119.58023 * 179.97438 * 13 12 11 15 15 C 1.46849 * 111.00004 * 304.20993 * 14 13 12 16 16 C 1.53039 * 109.52323 * 174.16382 * 15 14 13 17 17 C 1.53117 * 109.27893 * 59.17423 * 16 15 14 18 18 C 1.53003 * 109.52021 * 182.44253 * 17 16 15 19 19 C 1.52995 * 109.47067 * 294.68172 * 18 17 16 20 20 F 1.39903 * 109.47267 * 180.02562 * 19 18 17 21 21 C 1.53117 * 109.16315 * 302.34913 * 17 16 15 22 22 C 1.46845 * 110.99987 * 179.97438 * 14 13 12 23 23 N 1.31976 * 120.83497 * 359.97416 * 13 12 11 24 24 H 0.97005 * 119.99802 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.42444 * 359.97438 * 10 9 7 26 26 H 1.08002 * 120.66158 * 179.80588 * 11 10 9 27 27 H 1.08000 * 120.25737 * 180.27447 * 12 11 10 28 28 H 1.09001 * 109.46104 * 294.17583 * 15 14 13 29 29 H 1.09002 * 109.46255 * 54.14299 * 15 14 13 30 30 H 1.09005 * 109.50013 * 299.23748 * 16 15 14 31 31 H 1.08993 * 109.50227 * 179.11970 * 16 15 14 32 32 H 1.09002 * 109.52199 * 62.25320 * 17 16 15 33 33 H 1.08996 * 109.47338 * 54.68893 * 18 17 16 34 34 H 1.09002 * 109.47010 * 174.68591 * 18 17 16 35 35 H 1.08996 * 109.47631 * 300.00542 * 19 18 17 36 36 H 1.09003 * 109.47289 * 60.00006 * 19 18 17 37 37 H 1.09000 * 109.50242 * 297.71118 * 21 17 16 38 38 H 1.09003 * 109.50017 * 177.59710 * 21 17 16 39 39 H 1.09000 * 109.46044 * 305.85785 * 22 14 13 40 40 H 1.08998 * 109.46313 * 65.82217 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4400 0.7001 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3008 -2.4365 -0.0016 10 6 2.0083 -3.6515 0.0036 11 6 1.3033 -4.8418 -0.0018 12 6 -0.0824 -4.7944 -0.0022 13 6 -0.7284 -3.5551 -0.0026 14 7 -2.1158 -3.5054 -0.0036 15 6 -2.6685 -4.2568 -1.1378 16 6 -4.1941 -4.3029 -1.0259 17 6 -4.7439 -2.8739 -1.0197 18 6 -6.2637 -2.9116 -0.8469 19 6 -6.8996 -3.5767 -2.0692 20 9 -8.2893 -3.6107 -1.9115 21 6 -4.1159 -2.0988 0.1418 22 6 -2.5926 -2.1165 -0.0033 23 7 -0.0361 -2.4314 -0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 3.0883 -3.6555 0.0081 26 1 1.8219 -5.7891 -0.0011 27 1 -0.6581 -5.7082 -0.0020 28 1 -2.3873 -3.7666 -2.0698 29 1 -2.2727 -5.2724 -1.1280 30 1 -4.4761 -4.8054 -0.1006 31 1 -4.6050 -4.8473 -1.8761 32 1 -4.4955 -2.3839 -1.9612 33 1 -6.5136 -3.4814 0.0480 34 1 -6.6434 -1.8947 -0.7479 35 1 -6.6497 -3.0069 -2.9641 36 1 -6.5198 -4.5936 -2.1683 37 1 -4.3967 -2.5665 1.0855 38 1 -4.4710 -1.0684 0.1259 39 1 -2.1417 -1.5780 0.8303 40 1 -2.3118 -1.6359 -0.9404 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331959654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = -41.616356 kcal Electronic energy + Delta-G solvation = -21769.405965 eV Core-core repulsion = 18496.929881 eV Total energy + Delta-G solvation = -3272.476084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.50302 -41.00982 -39.18905 -36.26128 -35.18185 -32.54422 -31.99896 -31.54375 -29.76774 -27.50422 -25.56480 -24.34232 -23.24736 -22.52541 -21.78719 -20.60043 -19.35665 -17.96687 -17.04876 -16.82040 -16.48635 -16.39946 -16.26415 -15.91573 -15.60812 -15.22718 -14.87978 -14.85375 -14.18873 -14.07280 -13.86569 -13.41176 -13.29947 -12.97141 -12.81847 -12.70207 -12.59568 -12.35890 -12.22172 -12.05120 -11.80778 -11.69884 -11.56876 -11.26630 -11.17271 -10.97904 -10.45072 -9.91033 -9.48721 -8.73986 -8.28338 -6.50317 0.89829 1.19348 1.39857 1.51322 1.54076 2.22259 2.79167 3.03638 3.57093 3.73949 3.81441 3.93757 4.08352 4.12025 4.23615 4.30324 4.43193 4.45549 4.51658 4.60594 4.70843 4.71412 4.82861 4.85887 4.91001 4.93941 4.99691 5.11421 5.13256 5.14488 5.24176 5.29077 5.33209 5.42663 5.55597 5.68212 5.89699 6.01616 6.04765 6.35895 6.52015 6.79474 7.07128 8.19143 8.44787 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.004688 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.198578 B = 5971.653934 C = 7160.041762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.469 4.469 8 H 0.085 0.915 9 C 0.240 3.760 10 C -0.322 4.322 11 C -0.042 4.042 12 C -0.325 4.325 13 C 0.303 3.697 14 N -0.481 5.481 15 C 0.063 3.937 16 C -0.104 4.104 17 C -0.080 4.080 18 C -0.135 4.135 19 C 0.055 3.945 20 F -0.238 7.238 21 C -0.106 4.106 22 C 0.093 3.907 23 N -0.534 5.534 24 H 0.276 0.724 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.120 0.880 28 H 0.019 0.981 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 -3.837 -3.457 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.114 3.886 10 C -0.345 4.345 11 C -0.066 4.066 12 C -0.349 4.349 13 C 0.065 3.935 14 N -0.199 5.199 15 C -0.063 4.063 16 C -0.142 4.142 17 C -0.099 4.099 18 C -0.173 4.173 19 C 0.001 3.999 20 F -0.219 7.219 21 C -0.143 4.143 22 C -0.034 4.034 23 N -0.253 5.253 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.151 0.849 27 H 0.138 0.862 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.644 -3.132 -3.030 12.432 hybrid contribution 1.491 0.322 -0.440 1.588 sum -10.152 -2.810 -3.471 11.091 Atomic orbital electron populations 1.70219 1.08523 1.28676 1.29198 1.26883 0.95787 1.04101 0.92607 0.85193 0.79036 0.76077 0.79289 1.18917 1.19257 1.18234 1.19924 0.94601 0.90481 1.45019 0.89683 1.18834 0.88247 0.93286 0.88262 1.21820 0.99216 0.93804 1.19630 1.21104 0.93790 0.97387 0.94353 1.21046 0.94734 0.96404 1.22744 1.20406 0.89981 0.90571 0.92574 1.59209 1.03805 1.15431 1.41493 1.22214 0.96801 0.98029 0.89249 1.21741 0.91805 0.96777 1.03834 1.21074 0.94067 0.96202 0.98552 1.22071 0.94138 1.02337 0.98782 1.22251 0.74202 1.03800 0.99652 1.92723 1.33798 1.98170 1.97207 1.21676 0.92765 1.00705 0.99197 1.21547 0.94603 0.86874 1.00403 1.68651 1.07947 1.26397 1.22298 0.91299 0.87690 0.84940 0.86165 0.96292 0.89887 0.90431 0.88443 0.91294 0.90434 0.90711 0.89713 0.88946 0.91320 0.90820 0.92734 0.96507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.26 11.46 21.84 0.25 -39.01 16 2 C 0.03 1.45 5.50 85.29 0.47 1.92 16 3 Si 0.98 38.24 29.56 68.60 2.03 40.27 16 4 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.47 -25.77 9.14 23.46 0.21 -25.55 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.24 13.57 6.55 40.19 0.26 13.84 16 10 C -0.32 -16.29 9.83 22.87 0.22 -16.06 16 11 C -0.04 -1.88 10.15 22.39 0.23 -1.65 16 12 C -0.32 -14.62 9.20 22.74 0.21 -14.41 16 13 C 0.30 14.86 6.41 133.40 0.86 15.72 16 14 N -0.48 -19.64 4.67 -701.91 -3.28 -22.92 16 15 C 0.06 2.04 5.25 86.33 0.45 2.49 16 16 C -0.10 -2.35 5.08 30.65 0.16 -2.20 16 17 C -0.08 -1.82 2.25 -10.71 -0.02 -1.85 16 18 C -0.14 -2.44 5.14 30.59 0.16 -2.29 16 19 C 0.06 0.89 7.31 71.98 0.53 1.42 16 20 F -0.24 -5.10 17.36 44.97 0.78 -4.32 16 21 C -0.11 -3.07 5.38 30.64 0.16 -2.90 16 22 C 0.09 3.79 4.65 86.32 0.40 4.19 16 23 N -0.53 -29.69 6.16 -186.58 -1.15 -30.84 16 24 H 0.28 13.22 8.29 -92.70 -0.77 12.45 16 25 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 26 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.12 4.69 7.13 -2.91 -0.02 4.67 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 2.55 6.65 -2.39 -0.02 2.53 16 30 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.10 1.61 6.70 -2.39 -0.02 1.59 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.19 6.64 -2.39 -0.02 1.18 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 2.63 7.70 -2.39 -0.02 2.61 16 40 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16 Total: -1.00 -64.10 322.68 3.95 -60.16 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 1.02 Total: 24.00 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 4.30 Total: -27.33 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -4.18 Total: -92.77 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.78 Total: -4.32 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -64.10 3.95 -60.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331959654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.541 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds