Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99862 * 2 1 4 4 H 1.48500 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00357 * 3 2 1 6 6 H 1.48497 * 109.46991 * 60.00415 * 3 2 1 7 7 C 1.37878 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00458 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50701 * 60.07456 * 9 7 2 11 11 C 1.53123 * 109.50215 * 299.99742 * 9 7 2 12 12 C 1.53120 * 109.21163 * 182.33526 * 11 9 7 13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9 14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11 15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12 16 16 C 1.50693 * 109.47321 * 45.79054 * 15 14 13 17 17 N 1.32147 * 119.91458 * 269.72873 * 16 15 14 18 18 C 1.33113 * 120.08865 * 179.72257 * 17 16 15 19 19 N 1.37993 * 120.04379 * 180.27262 * 18 17 16 20 20 N 1.32855 * 119.90983 * 0.55200 * 18 17 16 21 21 C 1.32848 * 119.82676 * 359.72030 * 20 18 17 22 22 N 1.37990 * 120.04729 * 179.97438 * 21 20 18 23 23 N 1.32151 * 119.91063 * 90.00207 * 16 15 14 24 24 C 1.46848 * 111.19518 * 61.74755 * 14 13 12 25 25 H 0.96996 * 120.00253 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.52319 * 302.27319 * 11 9 7 27 27 H 1.08995 * 109.52318 * 62.40000 * 11 9 7 28 28 H 1.09004 * 109.49930 * 177.63007 * 12 11 9 29 29 H 1.08997 * 109.50353 * 297.74224 * 12 11 9 30 30 H 1.09003 * 109.44926 * 180.83262 * 13 12 11 31 31 H 1.09002 * 109.45193 * 60.88225 * 13 12 11 32 32 H 1.09002 * 109.47245 * 165.79508 * 15 14 13 33 33 H 1.09007 * 109.47066 * 285.78934 * 15 14 13 34 34 H 0.97000 * 120.00168 * 180.27416 * 19 18 17 35 35 H 0.97004 * 120.00291 * 0.27584 * 19 18 17 36 36 H 0.96998 * 120.00832 * 180.02562 * 22 21 20 37 37 H 0.97006 * 119.99828 * 0.02562 * 22 21 20 38 38 H 1.09006 * 109.46097 * 178.23945 * 24 14 13 39 39 H 1.08996 * 109.46972 * 58.27256 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6257 -2.5575 -0.8924 11 6 0.3701 -2.5819 1.2479 12 6 -0.3475 -3.9343 1.2698 13 6 0.6932 -5.0576 1.2363 14 7 1.5099 -4.9349 0.0221 15 6 2.4268 -6.0746 -0.1131 16 6 1.6794 -7.3553 0.1556 17 7 1.6201 -7.8384 1.3842 18 6 0.9562 -8.9664 1.6263 19 7 0.8901 -9.4671 2.9105 20 7 0.3619 -9.6125 0.6291 21 6 0.4283 -9.1266 -0.6056 22 7 -0.1868 -9.7942 -1.6448 23 7 1.0895 -7.9951 -0.8389 24 6 2.2443 -3.6634 0.0024 25 1 -0.4850 0.8400 0.0004 26 1 0.9911 -2.4845 2.1385 27 1 -0.3666 -1.7789 1.2280 28 1 -0.9435 -4.0153 2.1789 29 1 -0.9981 -4.0152 0.3991 30 1 0.1860 -6.0224 1.2368 31 1 1.3348 -4.9843 2.1144 32 1 2.8330 -6.0963 -1.1244 33 1 3.2417 -5.9723 0.6036 34 1 0.4095 -10.2913 3.0857 35 1 1.3243 -8.9949 3.6382 36 1 -0.1377 -9.4391 -2.5461 37 1 -0.6684 -10.6188 -1.4741 38 1 2.8637 -3.6156 -0.8933 39 1 2.8786 -3.5966 0.8863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350380621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = 53.065091 kcal Electronic energy + Delta-G solvation = -21787.830059 eV Core-core repulsion = 18571.672384 eV Total energy + Delta-G solvation = -3216.157675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.52981 -39.83443 -37.25315 -36.66917 -35.18213 -33.58302 -32.83456 -32.31614 -31.64504 -28.62421 -26.90555 -24.69600 -24.57690 -23.44005 -22.52396 -20.55901 -20.22991 -19.02436 -18.38174 -17.32397 -17.23857 -17.10456 -16.60496 -16.16613 -16.01871 -15.77301 -15.21789 -15.07428 -14.92807 -14.49666 -14.24172 -13.61759 -13.54052 -13.43425 -12.95044 -12.81799 -12.63045 -12.48983 -12.22285 -11.76465 -11.70659 -11.38460 -10.92585 -10.64069 -10.58706 -10.50009 -10.34995 -10.09773 -9.74396 -9.18483 -8.03839 -6.17684 0.05176 0.41571 1.44351 1.46167 1.57548 1.83021 2.31801 2.46201 2.69176 2.88329 3.23693 3.27538 3.70461 3.88932 4.12261 4.20471 4.39162 4.48260 4.57297 4.63197 4.74352 4.88137 4.96737 5.04520 5.08191 5.18346 5.35747 5.49622 5.52106 5.54337 5.67716 5.94582 6.08159 6.12101 6.19770 6.20573 6.22200 6.46921 6.49070 6.89716 6.95006 7.50275 7.62999 9.01364 Molecular weight = 278.16amu Principal moments of inertia in cm(-1) A = 0.033637 B = 0.003840 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.207454 B = 7290.293986 C = 7466.679673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.053 3.947 10 H -0.003 1.003 11 C -0.101 4.101 12 C -0.110 4.110 13 C 0.083 3.917 14 N -0.536 5.536 15 C 0.122 3.878 16 C 0.436 3.564 17 N -0.645 5.645 18 C 0.613 3.387 19 N -0.786 5.786 20 N -0.663 5.663 21 C 0.612 3.388 22 N -0.786 5.786 23 N -0.638 5.638 24 C 0.083 3.917 25 H 0.259 0.741 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.426 0.574 35 H 0.426 0.574 36 H 0.426 0.574 37 H 0.426 0.574 38 H 0.070 0.930 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 -20.831 2.686 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.034 3.966 10 H 0.015 0.985 11 C -0.139 4.139 12 C -0.147 4.147 13 C -0.046 4.046 14 N -0.262 5.262 15 C -0.007 4.007 16 C 0.157 3.843 17 N -0.382 5.382 18 C 0.245 3.755 19 N -0.338 5.338 20 N -0.406 5.406 21 C 0.244 3.756 22 N -0.337 5.337 23 N -0.373 5.373 24 C -0.044 4.044 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.260 0.740 35 H 0.259 0.741 36 H 0.260 0.740 37 H 0.260 0.740 38 H 0.088 0.912 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.725 -20.783 2.281 20.921 hybrid contribution 0.385 0.696 0.694 1.056 sum 1.110 -20.088 2.975 20.337 Atomic orbital electron populations 1.70053 1.07278 1.26931 1.51469 1.25729 0.95607 1.02374 0.94843 0.85546 0.79209 0.79707 0.77407 1.18889 1.20836 1.20820 1.21540 0.93187 0.91809 1.50421 0.92496 1.18593 0.92994 0.91410 0.93626 0.98467 1.21449 0.99179 0.95488 0.97799 1.21610 0.97433 0.95380 1.00322 1.21873 0.94990 0.97270 0.90421 1.62096 1.23896 1.01604 1.38587 1.20926 0.92649 0.83396 1.03694 1.22785 0.86042 0.92829 0.82667 1.68506 1.29207 1.16147 1.24322 1.19395 0.83731 0.84491 0.87875 1.41640 1.59480 1.29717 1.02922 1.67965 1.33943 1.38872 0.99828 1.19439 0.84781 0.85002 0.86332 1.41650 1.56495 1.28188 1.07365 1.68456 1.20138 1.11468 1.37274 1.22059 0.95401 0.87392 0.99580 0.93172 0.95438 0.92267 0.91737 0.93756 0.92830 0.94891 0.87169 0.91180 0.74033 0.74050 0.74013 0.74018 0.91191 0.95570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.88 11.35 21.45 0.24 -53.63 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.53 -29.43 8.57 25.60 0.22 -29.21 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 9 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16 10 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 11 C -0.10 -4.99 5.02 30.68 0.15 -4.83 16 12 C -0.11 -4.58 6.11 30.69 0.19 -4.40 16 13 C 0.08 3.13 4.82 86.37 0.42 3.55 16 14 N -0.54 -20.58 4.80 -900.66 -4.32 -24.90 16 15 C 0.12 3.90 5.76 85.55 0.49 4.40 16 16 C 0.44 13.85 5.58 138.53 0.77 14.62 16 17 N -0.65 -19.17 9.30 -190.36 -1.77 -20.94 16 18 C 0.61 15.80 8.76 261.25 2.29 18.09 16 19 N -0.79 -12.65 9.05 -59.46 -0.54 -13.19 16 20 N -0.66 -17.17 10.57 -200.59 -2.12 -19.29 16 21 C 0.61 16.19 8.76 261.25 2.29 18.48 16 22 N -0.79 -13.21 9.05 -59.46 -0.54 -13.75 16 23 N -0.64 -19.70 10.46 -190.37 -1.99 -21.69 16 24 C 0.08 3.52 4.65 86.33 0.40 3.92 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 3.30 6.15 -2.39 -0.01 3.28 16 28 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 2.01 5.95 -2.39 -0.01 2.00 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.07 2.09 8.08 -2.38 -0.02 2.07 16 34 H 0.43 4.74 8.95 -92.71 -0.83 3.91 16 35 H 0.43 5.51 8.95 -92.71 -0.83 4.68 16 36 H 0.43 5.89 8.95 -92.71 -0.83 5.06 16 37 H 0.43 4.94 8.95 -92.70 -0.83 4.11 16 38 H 0.07 2.85 8.12 -2.38 -0.02 2.83 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.87 318.15 -3.56 -72.43 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -2.20 Total: 20.62 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 7.64 Total: 28.48 kcal Atomic # 7 Polarization: -156.35 SS G_CDS: -11.04 Total: -167.39 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -68.87 -3.56 -72.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350380621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.493 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds