Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49280 * 2 1 4 4 C 1.53057 * 109.48328 * 239.95644 * 2 1 3 5 5 N 1.46961 * 109.36036 * 181.60770 * 4 2 1 6 6 C 1.39672 * 110.99502 * 183.18787 * 5 4 2 7 7 C 1.38952 * 120.05400 * 180.02562 * 6 5 4 8 8 C 1.38098 * 119.96963 * 180.02562 * 7 6 5 9 9 C 1.38266 * 120.09979 * 359.97438 * 8 7 6 10 10 C 1.38493 * 120.12635 * 359.97438 * 9 8 7 11 11 F 1.35106 * 119.99241 * 180.02562 * 10 9 8 12 12 C 1.38353 * 120.02462 * 359.77410 * 10 9 8 13 13 C 1.46950 * 110.87980 * 59.32581 * 5 4 2 14 14 C 1.53057 * 109.36492 * 300.67789 * 13 5 4 15 15 N 1.46952 * 109.36464 * 58.40161 * 14 13 5 16 16 C 1.46904 * 110.99891 * 176.81526 * 15 14 13 17 17 C 1.50702 * 109.47255 * 59.22599 * 16 15 14 18 18 H 1.07998 * 119.99810 * 5.43131 * 17 16 15 19 19 C 1.37873 * 119.99776 * 185.43295 * 17 16 15 20 20 N 1.31516 * 119.99736 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00119 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47037 * 90.00419 * 21 19 17 23 23 H 1.48501 * 109.46830 * 209.99738 * 21 19 17 24 24 H 1.48493 * 109.47237 * 329.99953 * 21 19 17 25 25 H 1.09004 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46347 * 300.03853 * 1 2 3 27 27 H 1.08993 * 109.47524 * 60.03797 * 1 2 3 28 28 H 1.08989 * 109.49009 * 301.57648 * 4 2 1 29 29 H 1.09002 * 109.48392 * 61.64660 * 4 2 1 30 30 H 1.08000 * 120.01695 * 0.02657 * 7 6 5 31 31 H 1.07994 * 119.94763 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.94129 * 180.02562 * 9 8 7 33 33 H 1.07992 * 120.05165 * 180.27498 * 12 10 9 34 34 H 1.08998 * 109.49394 * 180.70825 * 13 5 4 35 35 H 1.08997 * 109.50976 * 60.65155 * 13 5 4 36 36 H 1.09003 * 109.48238 * 298.43450 * 14 13 5 37 37 H 1.09003 * 109.50845 * 178.38057 * 14 13 5 38 38 H 1.08997 * 109.46786 * 179.22220 * 16 15 14 39 39 H 1.08998 * 109.47028 * 299.22394 * 16 15 14 40 40 H 0.97000 * 120.00109 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7224 -1.2491 5 7 3.5096 -0.7546 -1.2270 6 6 4.0147 -1.3438 -2.3883 7 6 5.3873 -1.4714 -2.5635 8 6 5.8848 -2.0537 -3.7126 9 6 5.0192 -2.5107 -4.6892 10 6 3.6505 -2.3866 -4.5182 11 9 2.8071 -2.8346 -5.4739 12 6 3.1462 -1.8088 -3.3667 13 6 4.0004 -1.4484 -0.0282 14 6 3.4898 -0.7261 1.2209 15 7 2.0208 -0.6939 1.1989 16 6 1.4894 -0.0742 2.4203 17 6 2.0173 1.3322 2.5406 18 1 2.6093 1.7568 1.7434 19 6 1.7445 2.0767 3.6685 20 7 2.2056 3.3039 3.7738 21 14 0.7201 1.3424 5.0472 22 1 1.6128 0.6587 6.0171 23 1 -0.0265 2.4238 5.7390 24 1 -0.2404 0.3613 4.4816 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5145 0.8897 27 1 -0.3634 0.5132 -0.8902 28 1 1.6546 -1.7416 -1.2629 29 1 1.7017 -0.1927 -2.1394 30 1 6.0646 -1.1152 -1.8015 31 1 6.9516 -2.1523 -3.8487 32 1 5.4111 -2.9662 -5.5866 33 1 2.0789 -1.7158 -3.2310 34 1 5.0903 -1.4482 -0.0283 35 1 3.6370 -2.4760 -0.0279 36 1 3.8758 0.2932 1.2347 37 1 3.8286 -1.2554 2.1115 38 1 0.4008 -0.0507 2.3717 39 1 1.8020 -0.6551 3.2880 40 1 2.0134 3.8278 4.5671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292310167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 1.352745 kcal Electronic energy + Delta-G solvation = -21879.922656 eV Core-core repulsion = 18609.309853 eV Total energy + Delta-G solvation = -3270.612804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.94738 -40.28599 -38.13396 -35.39163 -32.58089 -32.10397 -30.63179 -30.10451 -27.92506 -26.70303 -25.11148 -22.98105 -22.32940 -21.51708 -20.85696 -18.99058 -17.86545 -16.80154 -16.46624 -16.15332 -15.67308 -15.53243 -14.89931 -14.76747 -14.54218 -14.24005 -14.01985 -13.71403 -13.14960 -12.96091 -12.49117 -12.38953 -12.19803 -11.89514 -11.57008 -11.54544 -11.37992 -11.22052 -10.97290 -10.71948 -10.41764 -10.32662 -10.18147 -9.89193 -9.62440 -9.50097 -8.89958 -8.62213 -7.85374 -7.29162 -6.13701 -4.13843 1.12802 1.18497 3.24060 3.32550 3.35347 3.45489 3.82196 4.24210 4.35795 4.67551 4.74986 4.92195 5.05696 5.12370 5.18756 5.25778 5.36210 5.46063 5.52173 5.68705 5.72219 5.78725 5.92458 5.96550 6.02546 6.07393 6.14541 6.27224 6.27269 6.39428 6.66039 6.67040 6.72224 6.81109 6.86654 7.07047 7.09363 7.28590 7.51442 7.96969 8.00473 8.40686 8.89442 9.48835 10.99139 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034224 B = 0.004088 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.935347 B = 6847.505116 C = 7252.638713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.063 0.937 4 C 0.058 3.942 5 N -0.486 5.486 6 C 0.154 3.846 7 C -0.155 4.155 8 C -0.066 4.066 9 C -0.192 4.192 10 C 0.123 3.877 11 F -0.143 7.143 12 C -0.213 4.213 13 C 0.063 3.937 14 C 0.060 3.940 15 N -0.532 5.532 16 C 0.152 3.848 17 C -0.550 4.550 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.025 0.975 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.983 -11.502 -13.077 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 H 0.081 0.919 4 C -0.069 4.069 5 N -0.199 5.199 6 C 0.055 3.945 7 C -0.176 4.176 8 C -0.085 4.085 9 C -0.212 4.212 10 C 0.103 3.897 11 F -0.122 7.122 12 C -0.235 4.235 13 C -0.062 4.062 14 C -0.069 4.069 15 N -0.257 5.257 16 C 0.025 3.975 17 C -0.589 4.589 18 H 0.094 0.906 19 C -0.129 4.129 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.157 0.843 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.908 -11.330 -12.875 17.590 hybrid contribution -0.601 -0.006 0.619 0.863 sum 3.308 -11.336 -12.256 17.019 Atomic orbital electron populations 1.21788 0.94553 1.01383 1.02132 1.21473 0.94976 0.97170 0.88731 0.91930 1.22511 0.84616 1.00309 0.99431 1.59135 1.10523 1.49092 1.01140 1.18881 0.93102 0.90732 0.91832 1.20907 0.93647 1.03613 0.99428 1.20819 0.99569 0.95749 0.92362 1.20975 0.91376 1.06929 1.01920 1.17520 0.87608 0.97961 0.86588 1.91485 1.71064 1.87073 1.62529 1.21297 1.01257 1.05301 0.95610 1.22423 0.99650 0.95903 0.88194 1.22010 0.89551 1.00457 0.94902 1.62659 1.07105 1.52706 1.03184 1.20236 0.96055 0.93603 0.87596 1.21659 1.34462 0.97774 1.05014 0.90618 1.24959 0.95209 0.94618 0.98157 1.69928 1.45376 1.09362 1.28882 0.86826 0.81056 0.79096 0.82589 1.20222 1.21332 1.18909 0.92941 0.90898 0.93168 0.93122 0.90348 0.85012 0.85040 0.85233 0.84292 0.90177 0.93425 0.92246 0.90618 0.94760 0.95738 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.87 37.16 0.33 -2.02 16 2 C 0.09 1.57 2.26 -67.65 -0.15 1.42 16 3 H 0.06 1.36 6.76 -51.93 -0.35 1.01 16 4 C 0.06 0.89 3.58 -3.76 -0.01 0.88 16 5 N -0.49 -7.45 4.75 -170.96 -0.81 -8.26 16 6 C 0.15 2.11 5.64 -83.80 -0.47 1.64 16 7 C -0.16 -1.84 9.19 -39.37 -0.36 -2.20 16 8 C -0.07 -0.66 10.04 -39.62 -0.40 -1.06 16 9 C -0.19 -2.05 10.02 -39.48 -0.40 -2.45 16 10 C 0.12 1.54 7.30 -39.45 -0.29 1.25 16 11 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 12 C -0.21 -2.80 8.79 -39.31 -0.35 -3.15 16 13 C 0.06 0.95 5.38 -3.77 -0.02 0.93 16 14 C 0.06 1.09 5.24 -3.77 -0.02 1.07 16 15 N -0.53 -10.49 4.73 -227.92 -1.08 -11.57 16 16 C 0.15 3.47 3.87 -4.97 -0.02 3.45 16 17 C -0.55 -14.73 8.21 -34.44 -0.28 -15.01 16 18 H 0.08 2.23 6.07 -52.49 -0.32 1.92 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 21 Si 0.88 20.87 27.36 -169.99 -4.65 16.22 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.03 6.70 56.52 0.38 -5.66 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.37 6.27 -51.93 -0.33 1.05 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.75 7.57 -51.94 -0.39 0.36 16 29 H 0.08 1.12 7.18 -51.93 -0.37 0.74 16 30 H 0.13 1.43 7.18 -52.49 -0.38 1.05 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.14 1.76 5.81 -52.49 -0.31 1.45 16 34 H 0.08 1.04 6.82 -51.93 -0.35 0.68 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.27 6.64 -51.93 -0.34 0.92 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.03 0.79 5.43 -51.93 -0.28 0.51 16 39 H 0.02 0.57 7.27 -51.93 -0.38 0.19 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -29.14 312.82 -9.05 -38.18 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.50 Total: 1.84 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.54 Total: -13.30 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -1.12 Total: -45.85 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.65 Total: 16.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.14 -9.05 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292310167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.537 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds