Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49280 * 2 1 4 4 C 1.53057 * 109.48328 * 239.95644 * 2 1 3 5 5 N 1.46961 * 109.36036 * 181.60770 * 4 2 1 6 6 C 1.39672 * 110.99502 * 183.18787 * 5 4 2 7 7 C 1.38952 * 120.05400 * 180.02562 * 6 5 4 8 8 C 1.38098 * 119.96963 * 180.02562 * 7 6 5 9 9 C 1.38266 * 120.09979 * 359.97438 * 8 7 6 10 10 C 1.38493 * 120.12635 * 359.97438 * 9 8 7 11 11 F 1.35106 * 119.99241 * 180.02562 * 10 9 8 12 12 C 1.38353 * 120.02462 * 359.77410 * 10 9 8 13 13 C 1.46950 * 110.87980 * 59.32581 * 5 4 2 14 14 C 1.53057 * 109.36492 * 300.67789 * 13 5 4 15 15 N 1.46952 * 109.36464 * 58.40161 * 14 13 5 16 16 C 1.46904 * 110.99891 * 176.81526 * 15 14 13 17 17 C 1.50702 * 109.47255 * 59.22599 * 16 15 14 18 18 H 1.07998 * 119.99810 * 5.43131 * 17 16 15 19 19 C 1.37873 * 119.99776 * 185.43295 * 17 16 15 20 20 N 1.31516 * 119.99736 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00119 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47037 * 90.00419 * 21 19 17 23 23 H 1.48501 * 109.46830 * 209.99738 * 21 19 17 24 24 H 1.48493 * 109.47237 * 329.99953 * 21 19 17 25 25 H 1.09004 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46347 * 300.03853 * 1 2 3 27 27 H 1.08993 * 109.47524 * 60.03797 * 1 2 3 28 28 H 1.08989 * 109.49009 * 301.57648 * 4 2 1 29 29 H 1.09002 * 109.48392 * 61.64660 * 4 2 1 30 30 H 1.08000 * 120.01695 * 0.02657 * 7 6 5 31 31 H 1.07994 * 119.94763 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.94129 * 180.02562 * 9 8 7 33 33 H 1.07992 * 120.05165 * 180.27498 * 12 10 9 34 34 H 1.08998 * 109.49394 * 180.70825 * 13 5 4 35 35 H 1.08997 * 109.50976 * 60.65155 * 13 5 4 36 36 H 1.09003 * 109.48238 * 298.43450 * 14 13 5 37 37 H 1.09003 * 109.50845 * 178.38057 * 14 13 5 38 38 H 1.08997 * 109.46786 * 179.22220 * 16 15 14 39 39 H 1.08998 * 109.47028 * 299.22394 * 16 15 14 40 40 H 0.97000 * 120.00109 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7224 -1.2491 5 7 3.5096 -0.7546 -1.2270 6 6 4.0147 -1.3438 -2.3883 7 6 5.3873 -1.4714 -2.5635 8 6 5.8848 -2.0537 -3.7126 9 6 5.0192 -2.5107 -4.6892 10 6 3.6505 -2.3866 -4.5182 11 9 2.8071 -2.8346 -5.4739 12 6 3.1462 -1.8088 -3.3667 13 6 4.0004 -1.4484 -0.0282 14 6 3.4898 -0.7261 1.2209 15 7 2.0208 -0.6939 1.1989 16 6 1.4894 -0.0742 2.4203 17 6 2.0173 1.3322 2.5406 18 1 2.6093 1.7568 1.7434 19 6 1.7445 2.0767 3.6685 20 7 2.2056 3.3039 3.7738 21 14 0.7201 1.3424 5.0472 22 1 1.6128 0.6587 6.0171 23 1 -0.0265 2.4238 5.7390 24 1 -0.2404 0.3613 4.4816 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3632 0.5145 0.8897 27 1 -0.3634 0.5132 -0.8902 28 1 1.6546 -1.7416 -1.2629 29 1 1.7017 -0.1927 -2.1394 30 1 6.0646 -1.1152 -1.8015 31 1 6.9516 -2.1523 -3.8487 32 1 5.4111 -2.9662 -5.5866 33 1 2.0789 -1.7158 -3.2310 34 1 5.0903 -1.4482 -0.0283 35 1 3.6370 -2.4760 -0.0279 36 1 3.8758 0.2932 1.2347 37 1 3.8286 -1.2554 2.1115 38 1 0.4008 -0.0507 2.3717 39 1 1.8020 -0.6551 3.2880 40 1 2.0134 3.8278 4.5671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292310167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = -17.695575 kcal Electronic energy + Delta-G solvation = -21880.748653 eV Core-core repulsion = 18609.309853 eV Total energy + Delta-G solvation = -3271.438801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.89537 -41.43510 -39.37839 -36.70654 -34.56240 -33.51376 -31.73763 -31.28914 -29.39125 -28.12232 -26.59944 -24.21241 -23.70857 -22.82701 -22.04462 -20.61286 -18.89918 -18.73444 -17.48865 -17.15202 -16.87321 -16.60699 -16.39295 -16.19110 -15.92298 -15.77449 -15.26208 -14.78922 -14.54520 -14.39863 -14.08785 -13.74348 -13.39789 -13.19531 -12.98309 -12.85528 -12.71218 -12.57000 -12.35455 -12.26839 -12.09082 -11.91897 -11.73222 -11.62459 -11.31492 -10.76282 -10.71132 -9.81453 -9.04211 -8.87805 -8.29946 -6.34652 0.21557 0.28206 1.35875 1.37460 1.49029 2.34284 2.48930 2.78363 3.05317 3.21093 3.30961 3.77696 3.85716 4.01738 4.09177 4.14048 4.22346 4.33081 4.40753 4.43640 4.46714 4.59048 4.68721 4.69975 4.85977 4.94006 4.99405 5.03121 5.12737 5.13779 5.17633 5.22753 5.26219 5.38696 5.42033 5.53524 5.76487 5.93340 6.09223 6.24976 6.35098 6.38726 6.72244 7.31884 8.86511 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034224 B = 0.004088 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.935347 B = 6847.505116 C = 7252.638713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.085 3.915 3 H 0.017 0.983 4 C 0.070 3.930 5 N -0.503 5.503 6 C 0.134 3.866 7 C -0.159 4.159 8 C -0.057 4.057 9 C -0.184 4.184 10 C 0.107 3.893 11 F -0.148 7.148 12 C -0.221 4.221 13 C 0.074 3.926 14 C 0.060 3.940 15 N -0.525 5.525 16 C 0.158 3.842 17 C -0.543 4.543 18 H 0.031 0.969 19 C 0.012 3.988 20 N -0.949 5.949 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.245 1.245 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.138 0.862 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -14.056 -14.040 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.025 4.025 3 H 0.035 0.965 4 C -0.057 4.057 5 N -0.217 5.217 6 C 0.036 3.964 7 C -0.180 4.180 8 C -0.075 4.075 9 C -0.203 4.203 10 C 0.087 3.913 11 F -0.127 7.127 12 C -0.243 4.243 13 C -0.051 4.051 14 C -0.068 4.068 15 N -0.249 5.249 16 C 0.031 3.969 17 C -0.582 4.582 18 H 0.049 0.951 19 C -0.186 4.186 20 N -0.589 5.589 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.168 1.168 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.157 0.843 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.156 0.844 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.152 -13.910 -13.871 20.078 hybrid contribution -0.567 0.811 0.776 1.257 sum 3.585 -13.099 -13.095 18.866 Atomic orbital electron populations 1.21742 0.93136 1.02496 1.01957 1.21511 0.96221 0.95047 0.89677 0.96499 1.22354 0.85170 1.00404 0.97804 1.59144 1.10322 1.50299 1.01969 1.18932 0.94036 0.92200 0.91282 1.21140 0.92958 1.03444 1.00430 1.21196 1.01268 0.94022 0.91041 1.21335 0.90560 1.05689 1.02761 1.17716 0.88449 0.98604 0.86485 1.91471 1.71398 1.87189 1.62628 1.21323 1.01290 1.05721 0.95982 1.22306 1.00773 0.95470 0.86508 1.22017 0.88665 0.98733 0.97426 1.62704 1.07900 1.51712 1.02537 1.20102 0.96206 0.91228 0.89383 1.21838 1.33169 0.99642 1.03527 0.95050 1.25895 0.96689 0.94895 1.01141 1.70089 1.47618 1.11226 1.29992 0.85710 0.79628 0.78558 0.79039 1.19226 1.21304 1.16796 0.91022 0.93428 0.91043 0.92018 0.89345 0.84252 0.81561 0.82775 0.84424 0.88064 0.92470 0.96314 0.90079 0.94274 0.95295 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.87 71.98 0.64 -3.82 16 2 C 0.08 3.16 2.26 44.92 0.10 3.27 16 3 H 0.02 0.79 6.76 -2.39 -0.02 0.77 16 4 C 0.07 2.10 3.58 86.31 0.31 2.41 16 5 N -0.50 -15.18 4.75 -694.81 -3.30 -18.49 16 6 C 0.13 3.47 5.64 38.21 0.22 3.68 16 7 C -0.16 -3.37 9.19 22.41 0.21 -3.17 16 8 C -0.06 -0.93 10.04 22.24 0.22 -0.71 16 9 C -0.18 -3.31 10.02 22.34 0.22 -3.09 16 10 C 0.11 2.45 7.30 22.36 0.16 2.62 16 11 F -0.15 -3.56 17.27 44.97 0.78 -2.78 16 12 C -0.22 -5.50 8.79 22.44 0.20 -5.30 16 13 C 0.07 2.16 5.38 86.31 0.46 2.62 16 14 C 0.06 2.26 5.24 86.31 0.45 2.71 16 15 N -0.52 -20.82 4.73 -874.99 -4.14 -24.96 16 16 C 0.16 7.28 3.87 85.56 0.33 7.61 16 17 C -0.54 -30.27 8.21 25.60 0.21 -30.06 16 18 H 0.03 1.99 6.07 -2.91 -0.02 1.97 16 19 C 0.01 0.66 5.47 84.65 0.46 1.13 16 20 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 21 Si 0.95 43.24 27.36 68.60 1.88 45.12 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.24 -10.30 6.70 99.48 0.67 -9.63 16 25 H 0.07 2.07 8.14 -2.38 -0.02 2.06 16 26 H 0.05 1.79 6.27 -2.39 -0.01 1.78 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 1.73 7.57 -2.39 -0.02 1.71 16 29 H 0.09 2.47 7.18 -2.39 -0.02 2.45 16 30 H 0.14 2.69 7.18 -2.91 -0.02 2.67 16 31 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.14 3.33 5.81 -2.91 -0.02 3.31 16 34 H 0.10 2.48 6.82 -2.39 -0.02 2.46 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.02 0.85 6.64 -2.39 -0.02 0.83 16 37 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.04 1.78 5.43 -2.39 -0.01 1.77 16 39 H 0.03 1.31 7.27 -2.39 -0.02 1.30 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -65.91 312.82 0.71 -65.21 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.00 Total: 14.63 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.20 Total: -20.10 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -7.15 Total: -102.07 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -65.91 0.71 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292310167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.510 kcal (2) G-P(sol) polarization free energy of solvation -65.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds