Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.49125 * 2 1 4 4 C 1.53053 * 109.50081 * 120.05228 * 2 1 3 5 5 N 1.46961 * 109.36181 * 178.37594 * 4 2 1 6 6 C 1.39662 * 111.00209 * 176.80800 * 5 4 2 7 7 C 1.38950 * 120.06104 * 359.80564 * 6 5 4 8 8 C 1.38095 * 119.97788 * 180.02562 * 7 6 5 9 9 C 1.38275 * 120.09565 * 359.97438 * 8 7 6 10 10 C 1.38485 * 120.12408 * 0.02562 * 9 8 7 11 11 F 1.35100 * 119.98954 * 179.97438 * 10 9 8 12 12 C 1.38347 * 120.02573 * 359.97438 * 10 9 8 13 13 C 1.46961 * 110.88141 * 300.68241 * 5 4 2 14 14 C 1.53050 * 109.36498 * 59.31659 * 13 5 4 15 15 N 1.46952 * 109.36624 * 301.60191 * 14 13 5 16 16 C 1.46905 * 111.00245 * 183.18993 * 15 14 13 17 17 C 1.50708 * 109.46816 * 66.04246 * 16 15 14 18 18 H 1.07999 * 120.00287 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99593 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99945 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99757 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47196 * 60.00606 * 21 19 17 23 23 H 1.48505 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47335 * 300.00197 * 21 19 17 25 25 H 1.08992 * 109.47072 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46709 * 300.04799 * 1 2 3 27 27 H 1.09004 * 109.46681 * 60.04285 * 1 2 3 28 28 H 1.09000 * 109.49227 * 58.41112 * 4 2 1 29 29 H 1.09000 * 109.49103 * 298.34253 * 4 2 1 30 30 H 1.08004 * 120.01221 * 0.02562 * 7 6 5 31 31 H 1.08000 * 119.95248 * 180.25125 * 8 7 6 32 32 H 1.08001 * 119.93149 * 179.97438 * 9 8 7 33 33 H 1.08003 * 120.04620 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.48929 * 179.28862 * 13 5 4 35 35 H 1.09003 * 109.48312 * 299.32906 * 13 5 4 36 36 H 1.09000 * 109.48984 * 61.56831 * 14 13 5 37 37 H 1.09000 * 109.48837 * 181.63378 * 14 13 5 38 38 H 1.08993 * 109.46987 * 186.04088 * 16 15 14 39 39 H 1.08998 * 109.46879 * 306.05048 * 16 15 14 40 40 H 0.97000 * 119.99770 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0410 -0.7225 1.2488 5 7 3.5101 -0.7548 1.2262 6 6 4.0157 -1.3440 2.3871 7 6 3.1473 -1.8004 3.3711 8 6 3.6491 -2.3822 4.5186 9 6 5.0150 -2.5119 4.6898 10 6 5.8843 -2.0585 3.7118 11 9 7.2184 -2.1861 3.8822 12 6 5.3871 -1.4748 2.5603 13 6 4.0004 -1.4485 0.0269 14 6 3.4893 -0.7260 -1.2218 15 7 2.0204 -0.6937 -1.1992 16 6 1.4885 -0.0739 -2.4203 17 6 1.8098 -0.9457 -3.6069 18 1 2.3542 -1.8680 -3.4679 19 6 1.4077 -0.5662 -4.8700 20 7 0.7443 0.5568 -5.0393 21 14 1.8053 -1.6469 -6.3407 22 1 1.1868 -2.9840 -6.1541 23 1 1.2678 -1.0204 -7.5752 24 1 3.2779 -1.7953 -6.4624 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5146 0.8896 27 1 -0.3633 0.5132 -0.8904 28 1 1.6551 -1.7418 1.2627 29 1 1.7026 -0.1930 2.1394 30 1 2.0801 -1.7002 3.2385 31 1 2.9736 -2.7405 5.2813 32 1 5.4047 -2.9670 5.5885 33 1 6.0647 -1.1207 1.7975 34 1 5.0904 -1.4482 0.0268 35 1 3.6369 -2.4761 0.0272 36 1 3.8753 0.2933 -1.2357 37 1 3.8278 -1.2556 -2.1124 38 1 0.4076 0.0348 -2.3314 39 1 1.9425 0.9075 -2.5569 40 1 0.4618 0.8239 -5.9279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292310172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = -1.442569 kcal Electronic energy + Delta-G solvation = -21630.619193 eV Core-core repulsion = 18359.885175 eV Total energy + Delta-G solvation = -3270.734018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.97243 -40.31705 -38.08455 -35.28228 -32.81844 -32.04018 -30.78593 -29.93589 -27.64942 -26.62465 -25.18986 -23.13031 -22.29265 -21.49195 -20.95337 -19.12573 -17.92648 -16.59317 -16.37991 -16.06092 -15.68604 -15.59966 -14.87921 -14.72645 -14.63238 -14.35863 -13.82441 -13.64654 -13.36904 -13.09183 -12.60884 -12.31120 -12.01064 -11.78365 -11.67744 -11.51945 -11.33898 -11.24701 -10.90298 -10.81834 -10.62550 -10.44489 -10.25727 -9.82485 -9.59426 -9.20078 -8.89758 -8.44560 -7.90925 -7.31744 -6.05890 -4.07298 1.08591 1.15684 3.31149 3.35637 3.38120 3.40994 3.73650 4.28344 4.38483 4.65208 4.74452 4.89204 5.01518 5.05917 5.22941 5.28540 5.33257 5.36593 5.51017 5.59839 5.69695 5.76080 5.86597 5.90926 5.95021 6.00994 6.09457 6.20928 6.22634 6.36045 6.52137 6.59053 6.64144 6.71377 6.99463 7.23098 7.27777 7.31579 7.75301 8.04353 8.14161 8.49751 8.99497 9.56870 11.04868 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.003915 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.966043 B = 7149.464218 C = 7846.309196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 H 0.039 0.961 4 C 0.061 3.939 5 N -0.491 5.491 6 C 0.154 3.846 7 C -0.186 4.186 8 C -0.064 4.064 9 C -0.192 4.192 10 C 0.122 3.878 11 F -0.142 7.142 12 C -0.183 4.183 13 C 0.061 3.939 14 C 0.064 3.936 15 N -0.533 5.533 16 C 0.189 3.811 17 C -0.509 4.509 18 H 0.062 0.938 19 C 0.057 3.943 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.094 0.906 38 H 0.040 0.960 39 H -0.010 1.010 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -4.133 17.506 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.030 4.030 3 H 0.057 0.943 4 C -0.065 4.065 5 N -0.204 5.204 6 C 0.054 3.946 7 C -0.207 4.207 8 C -0.082 4.082 9 C -0.211 4.211 10 C 0.102 3.898 11 F -0.120 7.120 12 C -0.204 4.204 13 C -0.064 4.064 14 C -0.064 4.064 15 N -0.259 5.259 16 C 0.065 3.935 17 C -0.548 4.548 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.152 0.848 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.008 0.992 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.935 -3.983 17.245 18.374 hybrid contribution 0.500 -0.282 -0.821 1.002 sum 5.434 -4.265 16.424 17.818 Atomic orbital electron populations 1.21848 0.94125 1.02437 1.01721 1.21580 0.95418 0.95619 0.90380 0.94302 1.22457 0.84534 1.00664 0.98880 1.59137 1.10493 1.49481 1.01320 1.18820 0.92346 0.91031 0.92382 1.21434 1.00335 1.02956 0.95941 1.20824 0.94220 0.96412 0.96776 1.20981 0.93646 1.06473 1.00048 1.17468 0.77073 0.99907 0.95316 1.91489 1.30968 1.93951 1.95618 1.20701 0.94992 1.05998 0.98700 1.22458 0.99526 0.96440 0.87958 1.22046 0.89458 0.98874 0.96045 1.62350 1.06645 1.53919 1.02959 1.19818 0.95944 0.92898 0.84870 1.21111 1.35931 1.06876 0.90883 0.92019 1.24972 0.95265 0.95256 0.98992 1.69944 1.38657 1.22260 1.22886 0.86574 0.78633 0.80600 0.81682 1.20187 1.21354 1.20286 0.92069 0.93222 0.91040 0.92635 0.90319 0.84775 0.85159 0.85190 0.84544 0.90338 0.92889 0.95031 0.88832 0.94165 0.99171 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.89 37.16 0.33 -1.96 16 2 C 0.08 1.38 2.56 -67.65 -0.17 1.21 16 3 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.06 0.88 3.58 -3.76 -0.01 0.87 16 5 N -0.49 -7.25 4.75 -170.96 -0.81 -8.06 16 6 C 0.15 2.04 5.64 -83.80 -0.47 1.57 16 7 C -0.19 -2.12 8.82 -39.37 -0.35 -2.47 16 8 C -0.06 -0.62 10.04 -39.62 -0.40 -1.02 16 9 C -0.19 -1.99 10.02 -39.48 -0.40 -2.39 16 10 C 0.12 1.49 7.30 -39.45 -0.29 1.20 16 11 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 12 C -0.18 -2.34 9.17 -39.32 -0.36 -2.70 16 13 C 0.06 0.94 5.38 -3.77 -0.02 0.92 16 14 C 0.06 1.21 5.43 -3.77 -0.02 1.19 16 15 N -0.53 -10.98 4.52 -227.92 -1.03 -12.01 16 16 C 0.19 4.75 4.49 -4.97 -0.02 4.73 16 17 C -0.51 -13.88 8.47 -34.44 -0.29 -14.17 16 18 H 0.06 1.66 7.12 -52.49 -0.37 1.28 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.30 6.15 -51.93 -0.32 0.98 16 28 H 0.06 0.80 7.59 -51.93 -0.39 0.41 16 29 H 0.08 0.98 7.16 -51.93 -0.37 0.61 16 30 H 0.13 1.38 5.81 -52.48 -0.30 1.08 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.14 1.69 7.17 -52.48 -0.38 1.31 16 34 H 0.08 1.07 6.81 -51.93 -0.35 0.72 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.87 6.78 -51.93 -0.35 1.52 16 38 H 0.04 1.06 5.73 -51.93 -0.30 0.76 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 319.50 15.07 4.81 4.81 Total: -1.00 -29.02 319.50 -9.50 -38.53 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.66 Total: -0.78 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.57 Total: -11.56 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.11 Total: -45.52 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.02 -9.50 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292310172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.083 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds