Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.49125 * 2 1 4 4 C 1.53053 * 109.50081 * 120.05228 * 2 1 3 5 5 N 1.46961 * 109.36181 * 178.37594 * 4 2 1 6 6 C 1.39662 * 111.00209 * 176.80800 * 5 4 2 7 7 C 1.38950 * 120.06104 * 359.80564 * 6 5 4 8 8 C 1.38095 * 119.97788 * 180.02562 * 7 6 5 9 9 C 1.38275 * 120.09565 * 359.97438 * 8 7 6 10 10 C 1.38485 * 120.12408 * 0.02562 * 9 8 7 11 11 F 1.35100 * 119.98954 * 179.97438 * 10 9 8 12 12 C 1.38347 * 120.02573 * 359.97438 * 10 9 8 13 13 C 1.46961 * 110.88141 * 300.68241 * 5 4 2 14 14 C 1.53050 * 109.36498 * 59.31659 * 13 5 4 15 15 N 1.46952 * 109.36624 * 301.60191 * 14 13 5 16 16 C 1.46905 * 111.00245 * 183.18993 * 15 14 13 17 17 C 1.50708 * 109.46816 * 66.04246 * 16 15 14 18 18 H 1.07999 * 120.00287 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99593 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99945 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99757 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47196 * 60.00606 * 21 19 17 23 23 H 1.48505 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47335 * 300.00197 * 21 19 17 25 25 H 1.08992 * 109.47072 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46709 * 300.04799 * 1 2 3 27 27 H 1.09004 * 109.46681 * 60.04285 * 1 2 3 28 28 H 1.09000 * 109.49227 * 58.41112 * 4 2 1 29 29 H 1.09000 * 109.49103 * 298.34253 * 4 2 1 30 30 H 1.08004 * 120.01221 * 0.02562 * 7 6 5 31 31 H 1.08000 * 119.95248 * 180.25125 * 8 7 6 32 32 H 1.08001 * 119.93149 * 179.97438 * 9 8 7 33 33 H 1.08003 * 120.04620 * 179.97438 * 12 10 9 34 34 H 1.08999 * 109.48929 * 179.28862 * 13 5 4 35 35 H 1.09003 * 109.48312 * 299.32906 * 13 5 4 36 36 H 1.09000 * 109.48984 * 61.56831 * 14 13 5 37 37 H 1.09000 * 109.48837 * 181.63378 * 14 13 5 38 38 H 1.08993 * 109.46987 * 186.04088 * 16 15 14 39 39 H 1.08998 * 109.46879 * 306.05048 * 16 15 14 40 40 H 0.97000 * 119.99770 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0410 -0.7225 1.2488 5 7 3.5101 -0.7548 1.2262 6 6 4.0157 -1.3440 2.3871 7 6 3.1473 -1.8004 3.3711 8 6 3.6491 -2.3822 4.5186 9 6 5.0150 -2.5119 4.6898 10 6 5.8843 -2.0585 3.7118 11 9 7.2184 -2.1861 3.8822 12 6 5.3871 -1.4748 2.5603 13 6 4.0004 -1.4485 0.0269 14 6 3.4893 -0.7260 -1.2218 15 7 2.0204 -0.6937 -1.1992 16 6 1.4885 -0.0739 -2.4203 17 6 1.8098 -0.9457 -3.6069 18 1 2.3542 -1.8680 -3.4679 19 6 1.4077 -0.5662 -4.8700 20 7 0.7443 0.5568 -5.0393 21 14 1.8053 -1.6469 -6.3407 22 1 1.1868 -2.9840 -6.1541 23 1 1.2678 -1.0204 -7.5752 24 1 3.2779 -1.7953 -6.4624 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5146 0.8896 27 1 -0.3633 0.5132 -0.8904 28 1 1.6551 -1.7418 1.2627 29 1 1.7026 -0.1930 2.1394 30 1 2.0801 -1.7002 3.2385 31 1 2.9736 -2.7405 5.2813 32 1 5.4047 -2.9670 5.5885 33 1 6.0647 -1.1207 1.7975 34 1 5.0904 -1.4482 0.0268 35 1 3.6369 -2.4761 0.0272 36 1 3.8753 0.2933 -1.2357 37 1 3.8278 -1.2556 -2.1124 38 1 0.4076 0.0348 -2.3314 39 1 1.9425 0.9075 -2.5569 40 1 0.4618 0.8239 -5.9279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292310172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = -19.291423 kcal Electronic energy + Delta-G solvation = -21631.393177 eV Core-core repulsion = 18359.885175 eV Total energy + Delta-G solvation = -3271.508002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.89798 -41.42876 -39.30731 -36.60946 -34.73226 -33.50323 -31.72190 -31.19939 -29.11873 -28.07158 -26.72713 -24.23067 -23.84747 -22.76148 -22.14398 -20.56071 -18.90017 -18.53414 -17.38620 -17.13440 -16.90163 -16.61417 -16.39667 -16.28303 -15.92351 -15.57085 -15.16377 -14.98999 -14.67288 -14.20430 -14.08542 -13.83138 -13.31208 -13.01489 -12.94807 -12.86671 -12.77687 -12.58203 -12.52080 -12.35125 -12.19549 -11.95390 -11.88597 -11.33976 -11.23065 -10.72732 -10.56170 -9.78184 -9.07257 -8.91108 -8.19870 -6.29388 0.20368 0.28438 1.41375 1.43871 1.51738 2.40073 2.45417 2.75375 3.11780 3.20137 3.38713 3.74886 3.83881 3.98464 4.10855 4.14376 4.17052 4.26886 4.32965 4.40673 4.47850 4.53955 4.66739 4.71734 4.84552 4.91962 4.96801 5.04252 5.08393 5.14648 5.21394 5.27091 5.32334 5.36521 5.40421 5.64567 5.75599 5.90682 6.06807 6.20523 6.33868 6.62312 6.86065 7.39937 8.90998 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.003915 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.966043 B = 7149.464218 C = 7846.309196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.075 3.925 3 H 0.022 0.978 4 C 0.072 3.928 5 N -0.502 5.502 6 C 0.134 3.866 7 C -0.185 4.185 8 C -0.056 4.056 9 C -0.184 4.184 10 C 0.106 3.894 11 F -0.148 7.148 12 C -0.193 4.193 13 C 0.075 3.925 14 C 0.066 3.934 15 N -0.536 5.536 16 C 0.205 3.795 17 C -0.524 4.524 18 H 0.062 0.938 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.284 1.284 24 H -0.269 1.269 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.076 0.924 38 H 0.024 0.976 39 H -0.047 1.047 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.025 -5.844 19.698 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.034 4.034 3 H 0.040 0.960 4 C -0.055 4.055 5 N -0.216 5.216 6 C 0.035 3.965 7 C -0.206 4.206 8 C -0.074 4.074 9 C -0.203 4.203 10 C 0.086 3.914 11 F -0.127 7.127 12 C -0.214 4.214 13 C -0.051 4.051 14 C -0.062 4.062 15 N -0.261 5.261 16 C 0.079 3.921 17 C -0.562 4.562 18 H 0.080 0.920 19 C -0.195 4.195 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.194 1.194 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.166 0.834 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.094 0.906 38 H 0.042 0.958 39 H -0.029 1.029 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.965 -5.706 19.474 20.891 hybrid contribution 0.515 0.264 -1.389 1.505 sum 5.480 -5.442 18.085 19.665 Atomic orbital electron populations 1.21784 0.93042 1.02625 1.01965 1.21741 0.96403 0.94923 0.90375 0.96025 1.22380 0.84533 1.00742 0.97812 1.59104 1.10590 1.50331 1.01579 1.18847 0.92730 0.92663 0.92249 1.21676 1.00817 1.02284 0.95827 1.21218 0.94418 0.95006 0.96783 1.21341 0.93802 1.05071 1.00097 1.17671 0.77145 1.00728 0.95838 1.91472 1.31486 1.94075 1.95654 1.20740 0.95053 1.06492 0.99164 1.22247 1.00316 0.95605 0.86895 1.21998 0.88445 0.98244 0.97560 1.62297 1.07663 1.53658 1.02510 1.19461 0.94746 0.91109 0.86801 1.21440 1.35774 1.07054 0.91955 0.91969 1.25868 0.94978 0.96551 1.02056 1.70077 1.39734 1.24000 1.23629 0.85479 0.78758 0.78826 0.77818 1.19279 1.20958 1.19381 0.91817 0.89545 0.94172 0.92108 0.87566 0.83408 0.81615 0.82820 0.85091 0.88741 0.93038 0.96588 0.90601 0.95831 1.02890 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 8.89 71.98 0.64 -3.67 16 2 C 0.07 2.60 2.56 44.93 0.12 2.71 16 3 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 4 C 0.07 1.94 3.58 86.31 0.31 2.25 16 5 N -0.50 -14.23 4.75 -694.80 -3.30 -17.53 16 6 C 0.13 3.27 5.64 38.21 0.22 3.49 16 7 C -0.19 -3.58 8.82 22.41 0.20 -3.39 16 8 C -0.06 -0.85 10.04 22.24 0.22 -0.63 16 9 C -0.18 -3.17 10.02 22.34 0.22 -2.95 16 10 C 0.11 2.37 7.30 22.35 0.16 2.53 16 11 F -0.15 -3.53 17.27 44.97 0.78 -2.75 16 12 C -0.19 -4.71 9.17 22.44 0.21 -4.51 16 13 C 0.07 2.28 5.38 86.31 0.46 2.75 16 14 C 0.07 2.58 5.43 86.31 0.47 3.05 16 15 N -0.54 -22.77 4.52 -875.02 -3.95 -26.72 16 16 C 0.20 10.82 4.49 85.56 0.38 11.20 16 17 C -0.52 -29.42 8.47 25.60 0.22 -29.21 16 18 H 0.06 3.41 7.12 -2.91 -0.02 3.39 16 19 C 0.00 0.20 5.46 84.65 0.46 0.66 16 20 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 21 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.04 1.51 6.15 -2.38 -0.01 1.49 16 28 H 0.06 1.59 7.59 -2.39 -0.02 1.58 16 29 H 0.11 2.30 7.16 -2.39 -0.02 2.28 16 30 H 0.15 2.42 5.81 -2.91 -0.02 2.40 16 31 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 32 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.13 3.21 7.17 -2.91 -0.02 3.19 16 34 H 0.09 2.56 6.81 -2.39 -0.02 2.54 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 3.17 6.78 -2.39 -0.02 3.16 16 38 H 0.02 1.32 5.73 -2.39 -0.01 1.31 16 39 H -0.05 -2.74 8.12 -2.39 -0.02 -2.76 16 40 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -64.71 319.50 1.15 -63.56 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.03 Total: 8.84 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.29 Total: -15.70 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -6.97 Total: -100.01 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -64.71 1.15 -63.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292310172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds