Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.49149 * 2 1 4 4 C 1.53049 * 109.48967 * 239.95436 * 2 1 3 5 5 N 1.46957 * 109.36396 * 181.63409 * 4 2 1 6 6 C 1.39842 * 111.00177 * 183.18877 * 5 4 2 7 7 C 1.38830 * 120.07845 * 300.23330 * 6 5 4 8 8 C 1.38151 * 119.95033 * 180.32020 * 7 6 5 9 9 C 1.38278 * 120.11156 * 359.41980 * 8 7 6 10 10 C 1.38289 * 120.15477 * 0.30305 * 9 8 7 11 11 C 1.38275 * 120.05766 * 359.97438 * 10 9 8 12 12 F 1.35099 * 120.06252 * 179.97438 * 11 10 9 13 13 C 1.46962 * 110.88094 * 59.31940 * 5 4 2 14 14 C 1.53049 * 109.36209 * 300.68157 * 13 5 4 15 15 N 1.46949 * 109.36831 * 58.40250 * 14 13 5 16 16 C 1.46899 * 111.00199 * 176.81260 * 15 14 13 17 17 C 1.50702 * 109.47202 * 293.79519 * 16 15 14 18 18 H 1.08011 * 119.99460 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00867 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99159 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00647 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47362 * 59.99490 * 21 19 17 23 23 H 1.48497 * 109.47339 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46638 * 299.99719 * 21 19 17 25 25 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47120 * 300.04932 * 1 2 3 27 27 H 1.09004 * 109.46978 * 60.04526 * 1 2 3 28 28 H 1.08997 * 109.48896 * 61.66443 * 4 2 1 29 29 H 1.09005 * 109.48609 * 301.59836 * 4 2 1 30 30 H 1.08003 * 120.02848 * 0.03580 * 7 6 5 31 31 H 1.08002 * 119.94930 * 179.70528 * 8 7 6 32 32 H 1.07994 * 119.92347 * 180.27786 * 9 8 7 33 33 H 1.08004 * 119.97331 * 179.97438 * 10 9 8 34 34 H 1.08995 * 109.48632 * 60.64677 * 13 5 4 35 35 H 1.08998 * 109.48944 * 180.71687 * 13 5 4 36 36 H 1.09003 * 109.49137 * 298.42862 * 14 13 5 37 37 H 1.09006 * 109.48420 * 178.37268 * 14 13 5 38 38 H 1.08994 * 109.47558 * 53.79566 * 16 15 14 39 39 H 1.09002 * 109.47558 * 173.79955 * 16 15 14 40 40 H 0.97002 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 3.5097 -0.7551 -1.2265 6 6 4.0157 -1.3450 -2.3891 7 6 3.6760 -2.6522 -2.7106 8 6 4.1827 -3.2346 -3.8563 9 6 5.0180 -2.5138 -4.6897 10 6 5.3547 -1.2095 -4.3768 11 6 4.8560 -0.6219 -3.2288 12 9 5.1853 0.6522 -2.9228 13 6 3.9999 -1.4491 -0.0274 14 6 3.4892 -0.7267 1.2214 15 7 2.0203 -0.6940 1.1991 16 6 1.4888 -0.0743 2.4203 17 6 1.8065 -0.9480 3.6063 18 1 2.3495 -1.8713 3.4668 19 6 1.4043 -0.5691 4.8694 20 7 0.7427 0.5549 5.0391 21 14 1.7988 -1.6518 6.3395 22 1 3.2710 -1.8030 6.4621 23 1 1.2604 -1.0260 7.5739 24 1 1.1781 -2.9876 6.1511 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5146 0.8895 27 1 -0.3633 0.5132 -0.8904 28 1 1.7022 -0.1926 -2.1393 29 1 1.6544 -1.7416 -1.2629 30 1 3.0198 -3.2149 -2.0631 31 1 3.9222 -4.2530 -4.1039 32 1 5.4088 -2.9706 -5.5869 33 1 6.0078 -0.6493 -5.0297 34 1 3.6359 -2.4765 -0.0277 35 1 5.0899 -1.4491 -0.0274 36 1 3.8755 0.2925 1.2356 37 1 3.8277 -1.2565 2.1119 38 1 1.9450 0.9059 2.5585 39 1 0.4082 0.0374 2.3305 40 1 0.4594 0.8214 5.9277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616131933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = -1.158559 kcal Electronic energy + Delta-G solvation = -21895.585268 eV Core-core repulsion = 18624.863566 eV Total energy + Delta-G solvation = -3270.721702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.71012 -40.01964 -38.15436 -35.28205 -32.73018 -31.76905 -30.69875 -30.01462 -27.57709 -26.43974 -24.97435 -23.05066 -22.24042 -21.78211 -20.89065 -18.94338 -17.73500 -16.64516 -16.37646 -16.30345 -15.59534 -15.15415 -14.69009 -14.68539 -14.53675 -14.15834 -13.94844 -13.49954 -13.24271 -12.79746 -12.44648 -12.30522 -12.15497 -11.98964 -11.59063 -11.47485 -11.34318 -11.15426 -10.86258 -10.76182 -10.54783 -10.41707 -10.14856 -9.58557 -9.16957 -9.07417 -8.66965 -8.43463 -8.34697 -7.23052 -6.01664 -4.02763 1.00614 1.06433 3.33617 3.37860 3.40408 3.42682 3.79773 4.27519 4.42299 4.65137 4.78490 4.84480 5.04017 5.15251 5.22874 5.32852 5.41947 5.50138 5.60567 5.71618 5.78599 5.87272 5.91089 5.95164 6.01724 6.05782 6.15992 6.22215 6.33542 6.41567 6.61533 6.63433 6.68400 6.77832 7.05527 7.35457 7.37266 7.42081 7.80623 8.11026 8.21804 8.56407 9.04125 9.61051 11.09160 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028842 B = 0.004087 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.573785 B = 6849.781208 C = 7070.385843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.039 0.961 4 C 0.073 3.927 5 N -0.505 5.505 6 C 0.064 3.936 7 C -0.120 4.120 8 C -0.124 4.124 9 C -0.100 4.100 10 C -0.155 4.155 11 C 0.120 3.880 12 F -0.128 7.128 13 C 0.065 3.935 14 C 0.067 3.933 15 N -0.533 5.533 16 C 0.189 3.811 17 C -0.507 4.507 18 H 0.061 0.939 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.090 0.910 38 H -0.010 1.010 39 H 0.040 0.960 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.427 -5.332 -18.670 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.054 4.054 5 N -0.227 5.227 6 C -0.031 4.031 7 C -0.140 4.140 8 C -0.143 4.143 9 C -0.118 4.118 10 C -0.174 4.174 11 C 0.100 3.900 12 F -0.107 7.107 13 C -0.062 4.062 14 C -0.062 4.062 15 N -0.258 5.258 16 C 0.064 3.936 17 C -0.546 4.546 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.008 0.992 39 H 0.058 0.942 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.336 -5.146 -18.469 20.192 hybrid contribution 0.255 -0.240 0.936 0.999 sum 6.591 -5.386 -17.533 19.490 Atomic orbital electron populations 1.21845 0.94344 1.02294 1.01586 1.21547 0.95133 0.95698 0.90425 0.94313 1.22284 0.84652 0.99956 0.98464 1.59797 1.09861 1.53070 0.99983 1.18966 0.98314 0.92133 0.93737 1.21687 0.99908 0.94723 0.97666 1.21093 0.98167 1.00263 0.94754 1.20985 0.97732 0.93419 0.99645 1.21102 1.02848 0.96649 0.96818 1.17657 0.97798 0.79896 0.94694 1.91508 1.90662 1.35557 1.92931 1.22342 0.99052 0.96116 0.88655 1.22001 0.89319 0.98874 0.95957 1.62338 1.06752 1.53865 1.02889 1.19811 0.95902 0.92911 0.84957 1.21116 1.35852 1.06719 0.90926 0.92062 1.24974 0.95339 0.95263 0.98964 1.69951 1.38789 1.22239 1.22816 0.86577 0.78602 0.80595 0.81722 1.20305 1.21379 1.20231 0.92197 0.91119 0.93336 0.91141 0.93652 0.85084 0.85519 0.85214 0.84720 0.93685 0.91037 0.95105 0.89142 0.99201 0.94234 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.89 37.16 0.33 -2.11 16 2 C 0.08 1.51 2.56 -67.65 -0.17 1.34 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.07 1.16 4.59 -3.77 -0.02 1.14 16 5 N -0.51 -8.13 4.52 -170.87 -0.77 -8.90 16 6 C 0.06 0.89 4.73 -83.67 -0.40 0.49 16 7 C -0.12 -1.41 8.64 -39.39 -0.34 -1.75 16 8 C -0.12 -1.16 10.04 -39.60 -0.40 -1.56 16 9 C -0.10 -0.87 10.04 -39.55 -0.40 -1.27 16 10 C -0.15 -1.59 10.02 -39.55 -0.40 -1.99 16 11 C 0.12 1.61 7.31 -39.25 -0.29 1.32 16 12 F -0.13 -1.96 17.08 2.25 0.04 -1.92 16 13 C 0.06 1.07 5.36 -3.76 -0.02 1.05 16 14 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 15 N -0.53 -11.47 4.52 -227.93 -1.03 -12.50 16 16 C 0.19 4.89 4.49 -4.98 -0.02 4.87 16 17 C -0.51 -14.12 8.47 -34.44 -0.29 -14.41 16 18 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 21 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.35 6.15 -51.93 -0.32 1.03 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.04 8.13 -51.93 -0.42 0.61 16 29 H 0.05 0.71 7.23 -51.93 -0.38 0.33 16 30 H 0.13 1.52 7.06 -52.48 -0.37 1.15 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.04 0.73 7.46 -51.93 -0.39 0.34 16 35 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.90 6.79 -51.93 -0.35 1.54 16 38 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 39 H 0.04 1.07 5.73 -51.93 -0.30 0.78 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -30.13 323.29 -9.54 -39.67 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.84 Total: -1.80 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.53 Total: -10.08 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -1.07 Total: -47.28 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.13 -9.54 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616131933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.507 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds