Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49269 * 2 1 4 4 C 1.53052 * 109.50620 * 120.04988 * 2 1 3 5 5 N 1.46958 * 109.36657 * 178.38157 * 4 2 1 6 6 C 1.39846 * 111.00148 * 176.81491 * 5 4 2 7 7 C 1.38831 * 120.08015 * 59.84472 * 6 5 4 8 8 C 1.38156 * 119.94661 * 180.23571 * 7 6 5 9 9 C 1.38271 * 120.11184 * 359.48511 * 8 7 6 10 10 C 1.38288 * 120.16065 * 0.51496 * 9 8 7 11 11 C 1.38287 * 120.04914 * 359.74421 * 10 9 8 12 12 F 1.35099 * 120.05217 * 179.97438 * 11 10 9 13 13 C 1.46964 * 110.87763 * 300.67902 * 5 4 2 14 14 C 1.53048 * 109.36291 * 59.32291 * 13 5 4 15 15 N 1.46958 * 109.36483 * 301.59460 * 14 13 5 16 16 C 1.46902 * 111.00218 * 183.19166 * 15 14 13 17 17 C 1.50703 * 109.46672 * 293.95490 * 16 15 14 18 18 H 1.07995 * 120.00368 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99318 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00729 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99585 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46737 * 120.00117 * 21 19 17 24 24 H 1.48495 * 109.47252 * 240.00012 * 21 19 17 25 25 H 1.09004 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47388 * 300.04864 * 1 2 3 27 27 H 1.09003 * 109.46907 * 60.04659 * 1 2 3 28 28 H 1.09000 * 109.48743 * 58.41562 * 4 2 1 29 29 H 1.09003 * 109.49051 * 298.34742 * 4 2 1 30 30 H 1.08002 * 120.02372 * 359.95122 * 7 6 5 31 31 H 1.07995 * 119.93822 * 179.72380 * 8 7 6 32 32 H 1.07994 * 119.91763 * 180.25431 * 9 8 7 33 33 H 1.08000 * 119.97427 * 179.76090 * 10 9 8 34 34 H 1.09003 * 109.48454 * 179.28787 * 13 5 4 35 35 H 1.08998 * 109.48896 * 299.33171 * 13 5 4 36 36 H 1.09000 * 109.49080 * 61.56156 * 14 13 5 37 37 H 1.09003 * 109.48887 * 181.63081 * 14 13 5 38 38 H 1.08997 * 109.47146 * 53.95528 * 16 15 14 39 39 H 1.09001 * 109.47163 * 173.95813 * 16 15 14 40 40 H 0.96993 * 120.00595 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0410 -0.7224 1.2488 5 7 3.5100 -0.7546 1.2262 6 6 4.0163 -1.3446 2.3886 7 6 3.6785 -2.6525 2.7091 8 6 4.1763 -3.2311 3.8606 9 6 5.0191 -2.5133 4.6892 10 6 5.3586 -1.2102 4.3744 11 6 4.8599 -0.6227 3.2262 12 9 5.1911 0.6504 2.9189 13 6 4.0004 -1.4483 0.0270 14 6 3.4894 -0.7259 -1.2217 15 7 2.0203 -0.6937 -1.1992 16 6 1.4885 -0.0740 -2.4203 17 6 1.8785 1.3813 -2.4558 18 1 2.4626 1.8036 -1.6516 19 6 1.4896 2.1735 -3.5152 20 7 0.7778 1.6594 -4.4943 21 14 1.9724 3.9775 -3.5589 22 1 2.7658 4.3071 -2.3477 23 1 2.7878 4.2423 -4.7715 24 1 0.7480 4.8170 -3.5928 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5146 0.8896 27 1 -0.3633 0.5131 -0.8904 28 1 1.6551 -1.7417 1.2627 29 1 1.7025 -0.1929 2.1394 30 1 3.0233 -3.2157 2.0610 31 1 3.9098 -4.2470 4.1121 32 1 5.4097 -2.9700 5.5864 33 1 6.0140 -0.6511 5.0257 34 1 5.0904 -1.4480 0.0269 35 1 3.6370 -2.4760 0.0272 36 1 3.8753 0.2934 -1.2356 37 1 3.8278 -1.2554 -2.1123 38 1 1.8984 -0.5814 -3.2935 39 1 0.4018 -0.1591 -2.4273 40 1 0.5039 2.2167 -5.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616131941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = -2.264964 kcal Electronic energy + Delta-G solvation = -22137.636576 eV Core-core repulsion = 18866.866897 eV Total energy + Delta-G solvation = -3270.769679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.65421 -39.97710 -38.13808 -35.31805 -32.54025 -31.71337 -30.66785 -29.98110 -27.47274 -26.31647 -24.78690 -23.03468 -22.15927 -22.04366 -20.83113 -18.86970 -17.69471 -16.61912 -16.33722 -16.03497 -15.58275 -15.13209 -14.73662 -14.62414 -14.52168 -14.13814 -13.99200 -13.45919 -13.02882 -12.73291 -12.36688 -12.25799 -12.14127 -11.76182 -11.46223 -11.44565 -11.28664 -11.11168 -10.80371 -10.73845 -10.47872 -10.09986 -9.96944 -9.78565 -9.43501 -9.04674 -8.63104 -8.40205 -8.30819 -7.16361 -6.00694 -4.09060 1.03955 1.09557 3.28739 3.37206 3.42607 3.45787 3.85551 4.32037 4.43753 4.68066 4.80360 4.94925 5.07413 5.18953 5.28671 5.29914 5.51739 5.56526 5.67057 5.82659 5.87404 5.92302 5.94437 6.01817 6.16877 6.18741 6.24380 6.25730 6.38053 6.55587 6.68578 6.77062 6.94701 6.98120 7.12048 7.32916 7.47441 7.57052 7.93343 8.07210 8.28898 8.32630 9.01805 9.58043 11.04309 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.004649 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.431242 B = 6020.783295 C = 6479.644983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.090 3.910 3 H 0.058 0.942 4 C 0.070 3.930 5 N -0.503 5.503 6 C 0.065 3.935 7 C -0.120 4.120 8 C -0.125 4.125 9 C -0.100 4.100 10 C -0.155 4.155 11 C 0.121 3.879 12 F -0.127 7.127 13 C 0.066 3.934 14 C 0.064 3.936 15 N -0.539 5.539 16 C 0.185 3.815 17 C -0.545 4.545 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.028 0.972 39 H 0.037 0.963 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -9.247 16.519 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 H 0.076 0.924 4 C -0.056 4.056 5 N -0.225 5.225 6 C -0.031 4.031 7 C -0.141 4.141 8 C -0.144 4.144 9 C -0.118 4.118 10 C -0.174 4.174 11 C 0.100 3.900 12 F -0.105 7.105 13 C -0.060 4.060 14 C -0.065 4.065 15 N -0.264 5.264 16 C 0.060 3.940 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.531 5.531 21 Si 0.714 3.286 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.143 -9.142 16.293 19.666 hybrid contribution 0.338 1.353 -0.228 1.414 sum 6.481 -7.788 16.064 18.993 Atomic orbital electron populations 1.21755 0.94646 1.01182 1.02031 1.21411 0.94822 0.96898 0.88790 0.92380 1.22368 0.84402 0.99680 0.99158 1.59763 1.10036 1.52910 0.99775 1.18992 0.98159 0.92050 0.93869 1.21672 1.00009 0.94749 0.97624 1.21078 0.98253 1.00279 0.94764 1.20972 0.97721 0.93462 0.99686 1.21108 1.02888 0.96636 0.96807 1.17678 0.97648 0.79979 0.94680 1.91518 1.90570 1.35583 1.92878 1.22313 0.98972 0.95734 0.89004 1.21933 0.90031 0.99741 0.94819 1.62726 1.06516 1.53228 1.03895 1.19791 0.96118 0.92134 0.85988 1.21793 1.34286 0.96022 1.06293 0.92297 1.24939 0.94918 0.98343 0.95499 1.69949 1.37240 1.35966 1.09943 0.86630 0.78344 0.85627 0.78020 1.19754 1.21025 1.20998 0.93223 0.93685 0.90515 0.94124 0.91260 0.85181 0.85587 0.85257 0.84742 0.91187 0.94120 0.93243 0.90974 0.95356 0.94460 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.86 37.15 0.33 -2.20 16 2 C 0.09 1.77 2.16 -67.66 -0.15 1.63 16 3 H 0.06 1.32 6.45 -51.93 -0.33 0.99 16 4 C 0.07 1.17 4.59 -3.77 -0.02 1.15 16 5 N -0.50 -8.38 4.52 -170.87 -0.77 -9.15 16 6 C 0.06 0.93 4.73 -83.67 -0.40 0.53 16 7 C -0.12 -1.43 8.64 -39.39 -0.34 -1.77 16 8 C -0.12 -1.19 10.04 -39.60 -0.40 -1.59 16 9 C -0.10 -0.90 10.04 -39.55 -0.40 -1.30 16 10 C -0.16 -1.66 10.02 -39.54 -0.40 -2.06 16 11 C 0.12 1.69 7.31 -39.25 -0.29 1.40 16 12 F -0.13 -2.05 17.08 2.25 0.04 -2.02 16 13 C 0.07 1.08 5.36 -3.76 -0.02 1.06 16 14 C 0.06 1.25 5.33 -3.77 -0.02 1.23 16 15 N -0.54 -11.42 4.73 -227.93 -1.08 -12.50 16 16 C 0.19 4.68 4.61 -4.97 -0.02 4.65 16 17 C -0.54 -14.84 7.66 -34.44 -0.26 -15.11 16 18 H 0.06 1.64 5.80 -52.49 -0.30 1.33 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.62 6.39 -51.93 -0.33 1.29 16 28 H 0.04 0.64 7.23 -51.93 -0.38 0.27 16 29 H 0.07 1.10 8.13 -51.93 -0.42 0.67 16 30 H 0.13 1.49 7.06 -52.49 -0.37 1.12 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.07 1.08 8.13 -51.93 -0.42 0.65 16 35 H 0.04 0.63 7.46 -51.93 -0.39 0.25 16 36 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 37 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 38 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.04 1.00 6.38 -51.93 -0.33 0.67 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -29.48 320.26 -9.48 -38.95 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.73 Total: -0.79 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.47 Total: -10.63 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -1.11 Total: -46.97 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.48 -9.48 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616131941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.688 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds