Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49269 * 2 1 4 4 C 1.53052 * 109.50620 * 120.04988 * 2 1 3 5 5 N 1.46958 * 109.36657 * 178.38157 * 4 2 1 6 6 C 1.39846 * 111.00148 * 176.81491 * 5 4 2 7 7 C 1.38831 * 120.08015 * 59.84472 * 6 5 4 8 8 C 1.38156 * 119.94661 * 180.23571 * 7 6 5 9 9 C 1.38271 * 120.11184 * 359.48511 * 8 7 6 10 10 C 1.38288 * 120.16065 * 0.51496 * 9 8 7 11 11 C 1.38287 * 120.04914 * 359.74421 * 10 9 8 12 12 F 1.35099 * 120.05217 * 179.97438 * 11 10 9 13 13 C 1.46964 * 110.87763 * 300.67902 * 5 4 2 14 14 C 1.53048 * 109.36291 * 59.32291 * 13 5 4 15 15 N 1.46958 * 109.36483 * 301.59460 * 14 13 5 16 16 C 1.46902 * 111.00218 * 183.19166 * 15 14 13 17 17 C 1.50703 * 109.46672 * 293.95490 * 16 15 14 18 18 H 1.07995 * 120.00368 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99318 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00729 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99585 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47138 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46737 * 120.00117 * 21 19 17 24 24 H 1.48495 * 109.47252 * 240.00012 * 21 19 17 25 25 H 1.09004 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47388 * 300.04864 * 1 2 3 27 27 H 1.09003 * 109.46907 * 60.04659 * 1 2 3 28 28 H 1.09000 * 109.48743 * 58.41562 * 4 2 1 29 29 H 1.09003 * 109.49051 * 298.34742 * 4 2 1 30 30 H 1.08002 * 120.02372 * 359.95122 * 7 6 5 31 31 H 1.07995 * 119.93822 * 179.72380 * 8 7 6 32 32 H 1.07994 * 119.91763 * 180.25431 * 9 8 7 33 33 H 1.08000 * 119.97427 * 179.76090 * 10 9 8 34 34 H 1.09003 * 109.48454 * 179.28787 * 13 5 4 35 35 H 1.08998 * 109.48896 * 299.33171 * 13 5 4 36 36 H 1.09000 * 109.49080 * 61.56156 * 14 13 5 37 37 H 1.09003 * 109.48887 * 181.63081 * 14 13 5 38 38 H 1.08997 * 109.47146 * 53.95528 * 16 15 14 39 39 H 1.09001 * 109.47163 * 173.95813 * 16 15 14 40 40 H 0.96993 * 120.00595 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0410 -0.7224 1.2488 5 7 3.5100 -0.7546 1.2262 6 6 4.0163 -1.3446 2.3886 7 6 3.6785 -2.6525 2.7091 8 6 4.1763 -3.2311 3.8606 9 6 5.0191 -2.5133 4.6892 10 6 5.3586 -1.2102 4.3744 11 6 4.8599 -0.6227 3.2262 12 9 5.1911 0.6504 2.9189 13 6 4.0004 -1.4483 0.0270 14 6 3.4894 -0.7259 -1.2217 15 7 2.0203 -0.6937 -1.1992 16 6 1.4885 -0.0740 -2.4203 17 6 1.8785 1.3813 -2.4558 18 1 2.4626 1.8036 -1.6516 19 6 1.4896 2.1735 -3.5152 20 7 0.7778 1.6594 -4.4943 21 14 1.9724 3.9775 -3.5589 22 1 2.7658 4.3071 -2.3477 23 1 2.7878 4.2423 -4.7715 24 1 0.7480 4.8170 -3.5928 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5146 0.8896 27 1 -0.3633 0.5131 -0.8904 28 1 1.6551 -1.7417 1.2627 29 1 1.7025 -0.1929 2.1394 30 1 3.0233 -3.2157 2.0610 31 1 3.9098 -4.2470 4.1121 32 1 5.4097 -2.9700 5.5864 33 1 6.0140 -0.6511 5.0257 34 1 5.0904 -1.4480 0.0269 35 1 3.6370 -2.4760 0.0272 36 1 3.8753 0.2934 -1.2356 37 1 3.8278 -1.2554 -2.1123 38 1 1.8984 -0.5814 -3.2935 39 1 0.4018 -0.1591 -2.4273 40 1 0.5039 2.2167 -5.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616131941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = -20.833773 kcal Electronic energy + Delta-G solvation = -22138.441780 eV Core-core repulsion = 18866.866897 eV Total energy + Delta-G solvation = -3271.574883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.73950 -41.16829 -39.38269 -36.73529 -34.57490 -33.27213 -31.53249 -31.22869 -29.02864 -27.95111 -26.41668 -24.21040 -23.70470 -23.28445 -22.10551 -20.53869 -18.67419 -18.29383 -17.63007 -17.22117 -16.82378 -16.77574 -16.32013 -15.97103 -15.85392 -15.45174 -15.02445 -14.86929 -14.71022 -14.05368 -13.86269 -13.63919 -13.28580 -13.09605 -12.93522 -12.89382 -12.79616 -12.61880 -12.49468 -12.39828 -12.11805 -11.78754 -11.77615 -11.73513 -11.20985 -10.58785 -9.90090 -9.57624 -9.51152 -9.04114 -8.15915 -6.33494 0.17465 0.25138 1.32378 1.34733 1.46354 2.36198 2.63174 2.69919 3.09242 3.27891 3.39712 3.84286 3.93438 4.10398 4.11891 4.23198 4.29223 4.38924 4.39838 4.48261 4.50189 4.63985 4.74112 4.75614 4.87427 4.99312 5.09302 5.13049 5.20889 5.23205 5.31032 5.35465 5.39375 5.43736 5.46335 5.76046 5.82066 5.86920 6.06142 6.23324 6.40440 6.51277 6.86890 7.37235 8.86595 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026983 B = 0.004649 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.431242 B = 6020.783295 C = 6479.644983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.089 3.911 3 H 0.020 0.980 4 C 0.083 3.917 5 N -0.522 5.522 6 C 0.039 3.961 7 C -0.125 4.125 8 C -0.114 4.114 9 C -0.087 4.087 10 C -0.151 4.151 11 C 0.088 3.912 12 F -0.151 7.151 13 C 0.080 3.920 14 C 0.065 3.935 15 N -0.532 5.532 16 C 0.200 3.800 17 C -0.548 4.548 18 H 0.047 0.953 19 C 0.017 3.983 20 N -0.923 5.923 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.277 1.277 24 H -0.275 1.275 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.133 0.867 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.072 0.928 38 H 0.003 0.997 39 H 0.020 0.980 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 -10.735 19.267 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.020 4.020 3 H 0.038 0.962 4 C -0.043 4.043 5 N -0.244 5.244 6 C -0.056 4.056 7 C -0.145 4.145 8 C -0.133 4.133 9 C -0.104 4.104 10 C -0.170 4.170 11 C 0.068 3.932 12 F -0.129 7.129 13 C -0.047 4.047 14 C -0.064 4.064 15 N -0.256 5.256 16 C 0.073 3.927 17 C -0.587 4.587 18 H 0.066 0.934 19 C -0.183 4.183 20 N -0.563 5.563 21 Si 0.775 3.225 22 H -0.200 1.200 23 H -0.203 1.203 24 H -0.201 1.201 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.186 0.814 33 H 0.172 0.828 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.021 0.979 39 H 0.038 0.962 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.881 -10.639 19.059 22.886 hybrid contribution 0.149 1.735 -0.987 2.001 sum 7.030 -8.904 18.072 21.338 Atomic orbital electron populations 1.21668 0.93627 1.01987 1.01541 1.21459 0.95739 0.95215 0.89580 0.96155 1.22177 0.84944 0.99925 0.97261 1.59596 1.09807 1.54135 1.00825 1.19034 0.99754 0.93384 0.93401 1.21741 1.00326 0.93655 0.98760 1.21481 0.96916 1.01558 0.93337 1.21450 0.96231 0.92373 1.00395 1.21412 1.02437 0.97533 0.95642 1.18112 0.99235 0.79521 0.96382 1.91453 1.90997 1.37212 1.93282 1.22129 0.99384 0.95674 0.87491 1.21942 0.88925 0.98434 0.97114 1.62687 1.07448 1.52453 1.03032 1.19445 0.94933 0.91250 0.87043 1.21927 1.33808 0.97098 1.05897 0.93445 1.25687 0.94939 1.02462 0.95199 1.70045 1.38208 1.37540 1.10546 0.85637 0.78207 0.80723 0.77910 1.19977 1.20263 1.20093 0.91688 0.91104 0.94014 0.92672 0.90336 0.84877 0.82332 0.81397 0.82842 0.90180 0.92662 0.96501 0.91003 0.97921 0.96192 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.86 71.98 0.64 -4.17 16 2 C 0.09 3.59 2.16 44.92 0.10 3.69 16 3 H 0.02 0.97 6.45 -2.39 -0.02 0.96 16 4 C 0.08 2.72 4.59 86.31 0.40 3.11 16 5 N -0.52 -17.22 4.52 -694.50 -3.14 -20.36 16 6 C 0.04 1.07 4.73 38.20 0.18 1.25 16 7 C -0.12 -2.60 8.64 22.39 0.19 -2.41 16 8 C -0.11 -1.66 10.04 22.26 0.22 -1.43 16 9 C -0.09 -1.15 10.04 22.29 0.22 -0.92 16 10 C -0.15 -2.79 10.02 22.29 0.22 -2.57 16 11 C 0.09 2.36 7.31 22.48 0.16 2.52 16 12 F -0.15 -4.94 17.08 44.97 0.77 -4.17 16 13 C 0.08 2.59 5.36 86.31 0.46 3.06 16 14 C 0.06 2.64 5.33 86.31 0.46 3.10 16 15 N -0.53 -23.29 4.73 -875.02 -4.14 -27.44 16 16 C 0.20 10.60 4.61 85.56 0.39 10.99 16 17 C -0.55 -31.17 7.66 25.60 0.20 -30.97 16 18 H 0.05 2.77 5.80 -2.91 -0.02 2.76 16 19 C 0.02 0.95 5.46 84.65 0.46 1.41 16 20 N -0.92 -55.33 13.29 21.45 0.28 -55.04 16 21 Si 0.95 45.47 29.54 68.60 2.03 47.50 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.04 1.82 6.39 -2.39 -0.02 1.80 16 28 H 0.06 1.64 7.23 -2.39 -0.02 1.62 16 29 H 0.08 2.41 8.13 -2.39 -0.02 2.39 16 30 H 0.13 2.65 7.06 -2.91 -0.02 2.63 16 31 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 33 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.08 2.44 8.13 -2.39 -0.02 2.42 16 35 H 0.06 1.64 7.46 -2.39 -0.02 1.62 16 36 H 0.02 0.79 6.95 -2.39 -0.02 0.77 16 37 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 38 H 0.00 0.15 8.10 -2.39 -0.02 0.13 16 39 H 0.02 1.13 6.38 -2.39 -0.02 1.11 16 40 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -66.79 320.26 1.14 -65.65 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.03 Total: 7.22 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.32 Total: -13.35 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -6.99 Total: -102.84 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.77 Total: -4.17 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.79 1.14 -65.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616131941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.813 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds