Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.78654 * 2 1 4 4 C 1.52778 * 109.55811 * 239.76439 * 2 1 3 5 5 N 1.46905 * 109.42370 * 186.61081 * 4 2 1 6 6 C 1.46893 * 110.99855 * 187.12008 * 5 4 2 7 7 C 1.52993 * 109.47735 * 52.43146 * 6 5 4 8 8 O 1.42893 * 109.47236 * 61.78507 * 7 6 5 9 9 C 1.42905 * 113.99865 * 180.02562 * 8 7 6 10 10 F 1.39894 * 109.46952 * 299.99563 * 9 8 7 11 11 F 1.39898 * 109.47433 * 60.00246 * 9 8 7 12 12 C 1.46895 * 111.26494 * 62.96504 * 5 4 2 13 13 C 1.53238 * 109.34371 * 296.89400 * 12 5 4 14 14 H 1.08995 * 109.79350 * 294.03188 * 13 12 5 15 15 C 1.53001 * 109.62866 * 173.53705 * 13 12 5 16 16 N 1.47080 * 109.62255 * 120.48178 * 2 1 3 17 17 C 1.36930 * 120.88748 * 350.89133 * 16 2 1 18 18 H 1.08001 * 119.99680 * 53.05266 * 17 16 2 19 19 C 1.38808 * 120.00469 * 233.05128 * 17 16 2 20 20 N 1.31619 * 120.00263 * 199.25952 * 19 17 16 21 21 Si 1.86800 * 119.99714 * 19.25794 * 19 17 16 22 22 H 1.48503 * 109.47306 * 266.97279 * 21 19 17 23 23 H 1.48494 * 109.47451 * 26.97778 * 21 19 17 24 24 H 1.48504 * 109.46873 * 146.97845 * 21 19 17 25 25 H 1.09001 * 109.47244 * 304.05971 * 1 2 3 26 26 H 1.09005 * 109.46632 * 64.05707 * 1 2 3 27 27 H 1.08994 * 109.47239 * 184.05558 * 1 2 3 28 28 H 1.09005 * 109.56378 * 66.55653 * 4 2 1 29 29 H 1.09000 * 109.36107 * 306.54276 * 4 2 1 30 30 H 1.09002 * 109.47003 * 172.43138 * 6 5 4 31 31 H 1.09008 * 109.46768 * 292.42643 * 6 5 4 32 32 H 1.09000 * 109.47332 * 181.78867 * 7 6 5 33 33 H 1.09009 * 109.46875 * 301.78671 * 7 6 5 34 34 H 1.09007 * 109.46899 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.49257 * 176.93158 * 12 5 4 36 36 H 1.09002 * 109.49328 * 56.86120 * 12 5 4 37 37 H 1.08996 * 109.47703 * 298.90520 * 15 13 12 38 38 H 1.09003 * 109.46875 * 58.90235 * 15 13 12 39 39 H 1.09000 * 109.46988 * 178.90312 * 15 13 12 40 40 H 0.97001 * 119.99969 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0415 -0.7249 -1.2438 5 7 3.5018 -0.8626 -1.1632 6 6 4.0496 -1.4024 -2.4147 7 6 3.5517 -0.5635 -3.5932 8 8 4.0162 0.7804 -3.4512 9 6 3.6040 1.6523 -4.5057 10 9 4.0937 1.1730 -5.7253 11 9 2.2066 1.7013 -4.5510 12 6 3.8964 -1.6901 -0.0154 13 6 3.4620 -0.9993 1.2816 14 1 4.0198 -0.0719 1.4106 15 6 3.7239 -1.9263 2.4703 16 7 2.0240 -0.7028 1.1939 17 6 1.1671 -1.0760 2.1947 18 1 0.2873 -1.6580 1.9631 19 6 1.4292 -0.7063 3.5067 20 7 0.8550 -1.3519 4.4996 21 14 2.5970 0.7074 3.8631 22 1 3.9687 0.1768 4.0682 23 1 2.5974 1.6504 2.7161 24 1 2.1533 1.4190 5.0888 25 1 -0.3634 0.5756 0.8514 26 1 -0.3633 0.4496 -0.9242 27 1 -0.3633 -1.0250 0.0727 28 1 1.7786 -0.1529 -2.1336 29 1 1.5855 -1.7134 -1.2990 30 1 5.1385 -1.3687 -2.3791 31 1 3.7219 -2.4346 -2.5392 32 1 3.9324 -0.9830 -4.5244 33 1 2.4618 -0.5713 -3.6100 34 1 3.9965 2.6529 -4.3241 35 1 4.9789 -1.8181 -0.0144 36 1 3.4146 -2.6652 -0.0873 37 1 3.1417 -2.8403 2.3536 38 1 4.7846 -2.1740 2.5110 39 1 3.4321 -1.4251 3.3932 40 1 1.0379 -1.0933 5.4164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -117.832767 kcal Electronic energy + Delta-G solvation = -23562.188855 eV Core-core repulsion = 19855.638555 eV Total energy + Delta-G solvation = -3706.550300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.17451 -47.28687 -39.02382 -37.61045 -35.02321 -32.90530 -31.80678 -29.69824 -27.73860 -26.18568 -25.68862 -24.74817 -22.96113 -20.89723 -20.38789 -19.27854 -18.45209 -17.86828 -17.79635 -16.51639 -15.93789 -15.32382 -14.84034 -14.70147 -14.40865 -14.12575 -14.00385 -13.68984 -13.56304 -13.38081 -13.07365 -12.57847 -12.41603 -12.28010 -12.00012 -11.91667 -11.63717 -11.52300 -11.14017 -10.97779 -10.69072 -10.43847 -10.42217 -10.10448 -10.04944 -9.90136 -9.63818 -9.34429 -8.38430 -7.90656 -6.40823 -5.97438 -3.54951 2.93885 3.37508 3.50293 3.56785 3.61909 4.18336 4.40054 4.55843 4.66140 4.89221 4.96522 5.05556 5.18885 5.29042 5.48635 5.70802 5.75024 5.78317 5.96768 6.05213 6.12636 6.16963 6.35708 6.37611 6.44450 6.47929 6.50654 6.54604 6.74660 7.03841 7.09447 7.18852 7.36477 7.51021 7.57331 8.15533 8.56262 9.07798 9.73231 10.30922 11.15511 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.005118 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.762575 B = 5469.761395 C = 5742.289519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.171 3.829 3 H 0.034 0.966 4 C 0.043 3.957 5 N -0.529 5.529 6 C 0.059 3.941 7 C 0.049 3.951 8 O -0.362 6.362 9 C 0.401 3.599 10 F -0.216 7.216 11 F -0.210 7.210 12 C 0.050 3.950 13 C 0.169 3.831 14 H 0.031 0.969 15 C -0.145 4.145 16 N -0.600 5.600 17 C -0.267 4.267 18 H 0.070 0.930 19 C 0.054 3.946 20 N -0.899 5.899 21 Si 0.874 3.126 22 H -0.280 1.280 23 H -0.268 1.268 24 H -0.303 1.303 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.164 0.836 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.533 2.889 -16.493 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.065 3.935 3 H 0.051 0.949 4 C -0.086 4.086 5 N -0.254 5.254 6 C -0.070 4.070 7 C -0.027 4.027 8 O -0.283 6.283 9 C 0.309 3.691 10 F -0.198 7.198 11 F -0.192 7.192 12 C -0.079 4.079 13 C 0.063 3.937 14 H 0.049 0.951 15 C -0.203 4.203 16 N -0.326 5.326 17 C -0.396 4.396 18 H 0.088 0.912 19 C -0.148 4.148 20 N -0.539 5.539 21 Si 0.703 3.297 22 H -0.207 1.207 23 H -0.192 1.192 24 H -0.231 1.231 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.181 0.819 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.768 3.367 -16.105 17.791 hybrid contribution 0.151 -0.146 -0.159 0.264 sum 6.920 3.222 -16.264 17.966 Atomic orbital electron populations 1.21702 0.95236 1.02014 0.99894 1.20518 0.93011 0.93968 0.85995 0.94877 1.22687 0.86678 0.99345 0.99861 1.61922 1.11603 1.50250 1.01617 1.22100 1.00856 0.94878 0.89120 1.22872 0.99768 0.81248 0.98829 1.88568 1.74090 1.21450 1.44224 1.23226 0.75033 0.95794 0.75086 1.93038 1.87670 1.90673 1.48394 1.93062 1.32940 1.97110 1.96076 1.22660 0.98861 0.94650 0.91770 1.20689 0.86221 0.95105 0.91646 0.95088 1.22067 0.98062 1.00760 0.99382 1.44478 1.02701 1.65861 1.19554 1.18429 1.06557 1.29369 0.85205 0.91236 1.25850 0.96228 0.96526 0.96152 1.69868 1.45149 1.39875 0.98996 0.87155 0.80842 0.84610 0.77084 1.20655 1.19240 1.23090 0.91755 0.94423 0.92603 0.91595 0.95266 0.90012 0.93378 0.91887 0.91354 0.81903 0.91902 0.94841 0.91847 0.94762 0.90773 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.19 37.16 0.30 -2.23 16 2 C 0.17 3.57 3.64 -67.73 -0.25 3.32 16 3 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.04 0.77 4.51 -3.94 -0.02 0.75 16 5 N -0.53 -9.05 4.63 -234.62 -1.09 -10.14 16 6 C 0.06 0.78 5.51 -3.83 -0.02 0.76 16 7 C 0.05 0.59 5.29 37.15 0.20 0.79 16 8 O -0.36 -4.67 10.53 -35.23 -0.37 -5.04 16 9 C 0.40 4.03 6.30 101.05 0.64 4.67 16 10 F -0.22 -2.30 16.88 2.25 0.04 -2.26 16 11 F -0.21 -2.50 16.88 2.25 0.04 -2.46 16 12 C 0.05 0.90 4.91 -3.70 -0.02 0.89 16 13 C 0.17 3.70 2.45 -67.49 -0.17 3.53 16 14 H 0.03 0.72 7.31 -51.93 -0.38 0.34 16 15 C -0.15 -3.20 7.76 37.16 0.29 -2.91 16 16 N -0.60 -14.21 2.27 -157.27 -0.36 -14.57 16 17 C -0.27 -7.20 7.44 -15.06 -0.11 -7.31 16 18 H 0.07 2.05 7.20 -52.49 -0.38 1.68 16 19 C 0.05 1.51 3.98 -17.43 -0.07 1.44 16 20 N -0.90 -26.60 13.97 55.49 0.78 -25.82 16 21 Si 0.87 22.32 24.44 -169.99 -4.15 18.16 16 22 H -0.28 -6.89 6.40 56.52 0.36 -6.53 16 23 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 25 H 0.06 1.35 7.85 -51.93 -0.41 0.94 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 1.13 7.35 -51.93 -0.38 0.74 16 28 H 0.07 1.06 5.74 -51.93 -0.30 0.77 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.65 7.73 -51.93 -0.40 0.25 16 33 H 0.07 0.86 5.64 -51.92 -0.29 0.57 16 34 H 0.16 1.03 8.14 -51.92 -0.42 0.60 16 35 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 1.45 7.93 -51.93 -0.41 1.04 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.83 2.98 -51.93 -0.15 1.68 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 311.48 15.07 4.69 4.69 Total: -1.00 -30.45 311.48 -5.73 -36.18 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.08 Total: -2.43 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.78 Total: 3.69 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.67 Total: -50.53 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.37 Total: -5.04 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.08 Total: -4.72 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.15 Total: 18.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.45 -5.73 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.655 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds