Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.78654 * 2 1 4 4 C 1.52778 * 109.55811 * 239.76439 * 2 1 3 5 5 N 1.46905 * 109.42370 * 186.61081 * 4 2 1 6 6 C 1.46893 * 110.99855 * 187.12008 * 5 4 2 7 7 C 1.52993 * 109.47735 * 52.43146 * 6 5 4 8 8 O 1.42893 * 109.47236 * 61.78507 * 7 6 5 9 9 C 1.42905 * 113.99865 * 180.02562 * 8 7 6 10 10 F 1.39894 * 109.46952 * 299.99563 * 9 8 7 11 11 F 1.39898 * 109.47433 * 60.00246 * 9 8 7 12 12 C 1.46895 * 111.26494 * 62.96504 * 5 4 2 13 13 C 1.53238 * 109.34371 * 296.89400 * 12 5 4 14 14 H 1.08995 * 109.79350 * 294.03188 * 13 12 5 15 15 C 1.53001 * 109.62866 * 173.53705 * 13 12 5 16 16 N 1.47080 * 109.62255 * 120.48178 * 2 1 3 17 17 C 1.36930 * 120.88748 * 350.89133 * 16 2 1 18 18 H 1.08001 * 119.99680 * 53.05266 * 17 16 2 19 19 C 1.38808 * 120.00469 * 233.05128 * 17 16 2 20 20 N 1.31619 * 120.00263 * 199.25952 * 19 17 16 21 21 Si 1.86800 * 119.99714 * 19.25794 * 19 17 16 22 22 H 1.48503 * 109.47306 * 266.97279 * 21 19 17 23 23 H 1.48494 * 109.47451 * 26.97778 * 21 19 17 24 24 H 1.48504 * 109.46873 * 146.97845 * 21 19 17 25 25 H 1.09001 * 109.47244 * 304.05971 * 1 2 3 26 26 H 1.09005 * 109.46632 * 64.05707 * 1 2 3 27 27 H 1.08994 * 109.47239 * 184.05558 * 1 2 3 28 28 H 1.09005 * 109.56378 * 66.55653 * 4 2 1 29 29 H 1.09000 * 109.36107 * 306.54276 * 4 2 1 30 30 H 1.09002 * 109.47003 * 172.43138 * 6 5 4 31 31 H 1.09008 * 109.46768 * 292.42643 * 6 5 4 32 32 H 1.09000 * 109.47332 * 181.78867 * 7 6 5 33 33 H 1.09009 * 109.46875 * 301.78671 * 7 6 5 34 34 H 1.09007 * 109.46899 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.49257 * 176.93158 * 12 5 4 36 36 H 1.09002 * 109.49328 * 56.86120 * 12 5 4 37 37 H 1.08996 * 109.47703 * 298.90520 * 15 13 12 38 38 H 1.09003 * 109.46875 * 58.90235 * 15 13 12 39 39 H 1.09000 * 109.46988 * 178.90312 * 15 13 12 40 40 H 0.97001 * 119.99969 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0415 -0.7249 -1.2438 5 7 3.5018 -0.8626 -1.1632 6 6 4.0496 -1.4024 -2.4147 7 6 3.5517 -0.5635 -3.5932 8 8 4.0162 0.7804 -3.4512 9 6 3.6040 1.6523 -4.5057 10 9 4.0937 1.1730 -5.7253 11 9 2.2066 1.7013 -4.5510 12 6 3.8964 -1.6901 -0.0154 13 6 3.4620 -0.9993 1.2816 14 1 4.0198 -0.0719 1.4106 15 6 3.7239 -1.9263 2.4703 16 7 2.0240 -0.7028 1.1939 17 6 1.1671 -1.0760 2.1947 18 1 0.2873 -1.6580 1.9631 19 6 1.4292 -0.7063 3.5067 20 7 0.8550 -1.3519 4.4996 21 14 2.5970 0.7074 3.8631 22 1 3.9687 0.1768 4.0682 23 1 2.5974 1.6504 2.7161 24 1 2.1533 1.4190 5.0888 25 1 -0.3634 0.5756 0.8514 26 1 -0.3633 0.4496 -0.9242 27 1 -0.3633 -1.0250 0.0727 28 1 1.7786 -0.1529 -2.1336 29 1 1.5855 -1.7134 -1.2990 30 1 5.1385 -1.3687 -2.3791 31 1 3.7219 -2.4346 -2.5392 32 1 3.9324 -0.9830 -4.5244 33 1 2.4618 -0.5713 -3.6100 34 1 3.9965 2.6529 -4.3241 35 1 4.9789 -1.8181 -0.0144 36 1 3.4146 -2.6652 -0.0873 37 1 3.1417 -2.8403 2.3536 38 1 4.7846 -2.1740 2.5110 39 1 3.4321 -1.4251 3.3932 40 1 1.0379 -1.0933 5.4164 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878772530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = -139.804626 kcal Electronic energy + Delta-G solvation = -23563.141626 eV Core-core repulsion = 19855.638555 eV Total energy + Delta-G solvation = -3707.503071 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97315 -48.09543 -40.43374 -38.72139 -36.53601 -34.57157 -33.75737 -31.01105 -29.44055 -27.65953 -27.04062 -26.00919 -24.41329 -22.32473 -21.91589 -21.03563 -19.32656 -18.69264 -18.59493 -18.40844 -17.35461 -16.79299 -16.48616 -16.16121 -15.64498 -15.30315 -15.24171 -14.99432 -14.71184 -14.50013 -14.40866 -14.28291 -13.95890 -13.82420 -13.50212 -13.23189 -12.93882 -12.82903 -12.71759 -12.48491 -12.28754 -12.17388 -11.91839 -11.82732 -11.70891 -11.49243 -11.28741 -11.15474 -10.50275 -9.24653 -8.35852 -8.13510 -5.69841 1.32736 1.41364 1.54429 2.16034 2.44616 2.79210 2.91656 3.09586 3.33919 3.71363 3.85257 3.96041 4.09487 4.14663 4.21870 4.31771 4.39681 4.46722 4.55593 4.56587 4.60480 4.76031 4.81973 4.85181 4.87233 4.88556 4.91008 5.13620 5.31286 5.42218 5.50409 5.58130 5.61630 6.02241 6.14706 6.24668 6.36318 7.12891 7.65589 8.25869 9.02025 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.005118 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.762575 B = 5469.761395 C = 5742.289519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.162 3.838 3 H 0.023 0.977 4 C 0.058 3.942 5 N -0.540 5.540 6 C 0.060 3.940 7 C 0.049 3.951 8 O -0.382 6.382 9 C 0.398 3.602 10 F -0.220 7.220 11 F -0.222 7.222 12 C 0.061 3.939 13 C 0.162 3.838 14 H 0.023 0.977 15 C -0.140 4.140 16 N -0.612 5.612 17 C -0.248 4.248 18 H 0.034 0.966 19 C 0.015 3.985 20 N -0.942 5.942 21 Si 0.926 3.074 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.309 1.309 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.022 0.978 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.203 0.797 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.045 0.955 38 H 0.069 0.931 39 H 0.045 0.955 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.387 3.473 -18.705 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.057 3.943 3 H 0.041 0.959 4 C -0.071 4.071 5 N -0.265 5.265 6 C -0.068 4.068 7 C -0.027 4.027 8 O -0.303 6.303 9 C 0.307 3.693 10 F -0.202 7.202 11 F -0.204 7.204 12 C -0.068 4.068 13 C 0.056 3.944 14 H 0.041 0.959 15 C -0.198 4.198 16 N -0.339 5.339 17 C -0.378 4.378 18 H 0.052 0.948 19 C -0.183 4.183 20 N -0.584 5.584 21 Si 0.754 3.246 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.238 1.238 25 H 0.059 0.941 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.219 0.781 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.646 3.953 -18.357 20.673 hybrid contribution -0.438 -0.342 0.431 0.703 sum 8.208 3.612 -17.926 20.044 Atomic orbital electron populations 1.21611 0.94640 1.01018 1.00754 1.20694 0.93714 0.93572 0.86318 0.95909 1.22450 0.87389 0.98702 0.98608 1.61880 1.10922 1.50718 1.02983 1.22188 1.01452 0.95635 0.87486 1.22861 0.99402 0.81293 0.99113 1.88543 1.74389 1.21854 1.45527 1.23810 0.74408 0.96748 0.74314 1.93029 1.87628 1.90865 1.48661 1.93039 1.34156 1.97147 1.96095 1.22445 1.00327 0.93697 0.90363 1.20790 0.84810 0.95028 0.93724 0.95936 1.21988 1.00003 0.99600 0.98196 1.44654 1.03270 1.66348 1.19664 1.18183 1.05780 1.27745 0.86066 0.94810 1.26255 0.97838 0.98172 0.96009 1.69963 1.47563 1.41604 0.99319 0.86325 0.80189 0.81916 0.76141 1.19006 1.19874 1.23775 0.94111 0.90791 0.93992 0.89582 0.95973 0.88718 0.92124 0.89853 0.91977 0.78056 0.89132 0.95526 0.93616 0.91220 0.93582 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.73 8.19 71.98 0.59 -4.14 16 2 C 0.16 6.63 3.64 44.81 0.16 6.80 16 3 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.06 1.92 4.51 86.23 0.39 2.31 16 5 N -0.54 -16.94 4.63 -896.20 -4.15 -21.09 16 6 C 0.06 1.38 5.51 86.30 0.48 1.85 16 7 C 0.05 1.03 5.29 71.98 0.38 1.41 16 8 O -0.38 -8.58 10.53 -148.98 -1.57 -10.15 16 9 C 0.40 6.79 6.30 113.37 0.71 7.50 16 10 F -0.22 -4.06 16.88 44.97 0.76 -3.30 16 11 F -0.22 -4.73 16.88 44.97 0.76 -3.97 16 12 C 0.06 2.05 4.91 86.38 0.42 2.48 16 13 C 0.16 6.84 2.45 44.96 0.11 6.95 16 14 H 0.02 1.01 7.31 -2.39 -0.02 0.99 16 15 C -0.14 -6.04 7.76 71.98 0.56 -5.48 16 16 N -0.61 -28.96 2.27 -651.48 -1.48 -30.44 16 17 C -0.25 -13.71 7.44 84.03 0.63 -13.09 16 18 H 0.03 2.11 7.20 -2.91 -0.02 2.09 16 19 C 0.02 0.87 3.98 84.86 0.34 1.20 16 20 N -0.94 -57.37 13.97 21.65 0.30 -57.07 16 21 Si 0.93 46.64 24.44 68.60 1.68 48.32 16 22 H -0.26 -12.52 6.40 99.48 0.64 -11.88 16 23 H -0.27 -13.89 7.11 99.48 0.71 -13.19 16 24 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 25 H 0.04 1.73 7.85 -2.39 -0.02 1.71 16 26 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.04 1.71 7.35 -2.39 -0.02 1.69 16 28 H 0.09 2.54 5.74 -2.38 -0.01 2.53 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.08 1.42 7.73 -2.39 -0.02 1.40 16 33 H 0.06 1.37 5.64 -2.38 -0.01 1.36 16 34 H 0.20 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.09 2.57 8.11 -2.39 -0.02 2.55 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.04 2.08 7.93 -2.39 -0.02 2.06 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 2.24 2.98 -2.39 -0.01 2.24 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -66.67 311.48 2.02 -64.64 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.96 Total: 5.26 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 4.77 Total: 7.79 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -5.33 Total: -108.60 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.57 Total: -10.15 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 1.52 Total: -7.27 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.68 Total: 48.32 kcal Total: -66.67 2.02 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.160 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds