Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.78852 * 2 1 4 4 C 1.53240 * 109.62718 * 239.51753 * 2 1 3 5 5 N 1.46899 * 109.36689 * 186.47191 * 4 2 1 6 6 C 1.46892 * 111.00683 * 187.24063 * 5 4 2 7 7 C 1.53001 * 109.47194 * 282.54420 * 6 5 4 8 8 O 1.42906 * 109.46835 * 65.96854 * 7 6 5 9 9 C 1.42903 * 113.99989 * 180.02562 * 8 7 6 10 10 F 1.39899 * 109.46882 * 300.00266 * 9 8 7 11 11 F 1.39907 * 109.46966 * 59.99270 * 9 8 7 12 12 C 1.46900 * 111.26504 * 63.09014 * 5 4 2 13 13 C 1.53244 * 109.34205 * 296.89990 * 12 5 4 14 14 H 1.08996 * 109.62830 * 173.54275 * 13 12 5 15 15 C 1.53001 * 109.62752 * 293.92748 * 13 12 5 16 16 N 1.47078 * 108.52195 * 53.82756 * 13 12 5 17 17 C 1.36933 * 120.87951 * 128.85534 * 16 13 12 18 18 H 1.08010 * 120.00159 * 210.33537 * 17 16 13 19 19 C 1.38804 * 120.00286 * 30.33006 * 17 16 13 20 20 N 1.31616 * 120.00053 * 11.81716 * 19 17 16 21 21 Si 1.86800 * 120.00385 * 191.81313 * 19 17 16 22 22 H 1.48505 * 109.46853 * 60.00173 * 21 19 17 23 23 H 1.48503 * 109.47498 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47355 * 300.00396 * 21 19 17 25 25 H 1.08996 * 109.46778 * 181.88097 * 1 2 3 26 26 H 1.08994 * 109.46778 * 301.87818 * 1 2 3 27 27 H 1.08998 * 109.47241 * 61.87825 * 1 2 3 28 28 H 1.09005 * 109.49522 * 66.50322 * 4 2 1 29 29 H 1.08998 * 109.49699 * 306.44564 * 4 2 1 30 30 H 1.09001 * 109.46938 * 42.54288 * 6 5 4 31 31 H 1.08995 * 109.47333 * 162.54346 * 6 5 4 32 32 H 1.08998 * 109.46962 * 185.96500 * 7 6 5 33 33 H 1.08997 * 109.47406 * 305.97043 * 7 6 5 34 34 H 1.08998 * 109.47279 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.49553 * 56.85585 * 12 5 4 36 36 H 1.08997 * 109.49683 * 176.91338 * 12 5 4 37 37 H 1.08998 * 109.47326 * 59.99815 * 15 13 12 38 38 H 1.09002 * 109.47161 * 180.02562 * 15 13 12 39 39 H 1.09002 * 109.47092 * 299.99721 * 15 13 12 40 40 H 0.97004 * 120.00576 * 184.99585 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7322 -1.2439 5 7 3.5054 -0.8649 -1.1614 6 6 4.0562 -1.4069 -2.4106 7 6 3.8118 -2.9164 -2.4632 8 8 2.4079 -3.1687 -2.5512 9 6 2.0690 -4.5559 -2.6055 10 9 2.6643 -5.1376 -3.7300 11 9 2.5318 -5.1947 -1.4500 12 6 3.9015 -1.6877 -0.0107 13 6 3.4635 -0.9944 1.2838 14 1 3.6514 -1.6515 2.1328 15 6 4.2462 0.3085 1.4592 16 7 2.0247 -0.7026 1.1937 17 6 1.1681 -1.0748 2.1951 18 1 0.1414 -1.3186 1.9647 19 6 1.6192 -1.1389 3.5062 20 7 2.7882 -0.6256 3.8259 21 14 0.5671 -1.9537 4.8172 22 1 0.3295 -3.3729 4.4498 23 1 1.2687 -1.8912 6.1246 24 1 -0.7335 -1.2445 4.9196 25 1 -0.3633 -1.0271 0.0337 26 1 -0.3633 0.5427 0.8726 27 1 -0.3633 0.4844 -0.9063 28 1 1.7811 -0.1637 -2.1358 29 1 1.5920 -1.7223 -1.2966 30 1 3.5676 -0.9299 -3.2603 31 1 5.1276 -1.2108 -2.4506 32 1 4.3116 -3.3352 -3.3367 33 1 4.2084 -3.3804 -1.5603 34 1 0.9862 -4.6631 -2.6707 35 1 3.4228 -2.6645 -0.0800 36 1 4.9843 -1.8126 -0.0084 37 1 4.0511 0.9664 0.6124 38 1 3.9330 0.7992 2.3807 39 1 5.3124 0.0878 1.5098 40 1 3.1360 -0.7337 4.7249 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = -123.263537 kcal Electronic energy + Delta-G solvation = -24047.446850 eV Core-core repulsion = 20340.661054 eV Total energy + Delta-G solvation = -3706.785796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.06193 -47.17062 -39.07612 -37.30644 -34.70530 -32.48429 -31.37738 -29.18356 -27.50364 -25.98113 -25.55483 -24.41081 -23.13547 -21.30080 -20.42513 -18.58071 -18.36499 -17.73987 -17.67517 -16.05185 -15.78571 -14.97400 -14.79388 -14.28267 -14.13909 -14.07656 -13.75240 -13.56761 -13.51343 -13.15848 -12.85431 -12.41124 -12.31595 -11.89753 -11.76130 -11.58437 -11.46755 -11.06869 -10.85445 -10.78140 -10.56382 -10.45684 -10.42377 -10.36506 -9.94888 -9.66668 -9.39566 -9.13454 -8.38620 -7.65870 -6.49629 -5.65351 -3.15028 3.01411 3.42278 3.48204 3.48847 3.67262 4.44536 4.53169 4.57326 4.77468 5.07128 5.23285 5.29611 5.40473 5.49090 5.56026 5.95288 5.97584 6.05194 6.19036 6.28858 6.34115 6.42738 6.46600 6.54753 6.58800 6.72864 6.93461 7.05878 7.12695 7.18258 7.34767 7.61410 7.68463 7.81722 7.93472 8.05574 8.56438 9.33840 9.94758 10.54747 11.38949 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018442 B = 0.006421 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.905675 B = 4359.543365 C = 4868.100187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.170 3.830 3 H 0.030 0.970 4 C 0.047 3.953 5 N -0.524 5.524 6 C 0.059 3.941 7 C 0.009 3.991 8 O -0.372 6.372 9 C 0.400 3.600 10 F -0.216 7.216 11 F -0.207 7.207 12 C 0.038 3.962 13 C 0.200 3.800 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.584 5.584 17 C -0.244 4.244 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.284 1.284 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.018 0.982 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -4.592 -13.309 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.048 0.952 4 C -0.082 4.082 5 N -0.247 5.247 6 C -0.070 4.070 7 C -0.069 4.069 8 O -0.293 6.293 9 C 0.309 3.691 10 F -0.198 7.198 11 F -0.189 7.189 12 C -0.091 4.091 13 C 0.093 3.907 14 H 0.109 0.891 15 C -0.194 4.194 16 N -0.307 5.307 17 C -0.374 4.374 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.728 3.272 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.211 1.211 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.179 0.821 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.958 -3.928 -13.035 13.647 hybrid contribution -0.459 -1.659 0.563 1.811 sum 0.499 -5.587 -12.471 13.675 Atomic orbital electron populations 1.21773 0.96241 1.01290 1.00033 1.20505 0.92152 0.94173 0.86863 0.95245 1.22785 0.86685 1.00090 0.98620 1.62101 1.11882 1.49334 1.01404 1.22380 1.01059 0.88874 0.94724 1.23661 0.80292 1.01264 1.01637 1.88551 1.26539 1.21208 1.93049 1.23181 0.96505 0.78061 0.71386 1.93030 1.87399 1.85360 1.53999 1.93082 1.91504 1.82838 1.51433 1.22916 0.98265 0.94958 0.92995 1.20340 0.83093 0.95079 0.92168 0.89083 1.21974 0.96354 0.99513 1.01602 1.44189 1.03396 1.65060 1.18040 1.19134 0.94234 1.38502 0.85543 0.91541 1.25072 0.97647 1.00051 0.96815 1.69988 1.19310 1.45949 1.19213 0.86455 0.79886 0.79445 0.81422 1.21321 1.21770 1.21079 0.92990 0.92076 0.94369 0.92728 0.93344 0.90478 0.89263 0.92363 0.91100 0.82104 0.95280 0.92570 0.94902 0.90684 0.96278 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.96 37.16 0.30 -2.28 16 2 C 0.17 3.60 3.26 -67.49 -0.22 3.38 16 3 H 0.03 0.67 7.62 -51.93 -0.40 0.28 16 4 C 0.05 0.87 4.41 -3.70 -0.02 0.85 16 5 N -0.52 -9.29 4.34 -234.33 -1.02 -10.30 16 6 C 0.06 0.81 6.03 -3.83 -0.02 0.79 16 7 C 0.01 0.12 5.19 37.16 0.19 0.31 16 8 O -0.37 -5.30 7.97 -35.23 -0.28 -5.58 16 9 C 0.40 4.85 6.31 101.05 0.64 5.49 16 10 F -0.22 -2.66 16.88 2.25 0.04 -2.62 16 11 F -0.21 -3.05 16.88 2.25 0.04 -3.02 16 12 C 0.04 0.74 3.90 -3.70 -0.01 0.72 16 13 C 0.20 4.71 2.33 -67.49 -0.16 4.55 16 14 H 0.09 2.44 6.24 -51.93 -0.32 2.12 16 15 C -0.14 -3.11 8.97 37.16 0.33 -2.78 16 16 N -0.58 -14.33 2.73 -157.00 -0.43 -14.76 16 17 C -0.24 -6.53 8.65 -15.06 -0.13 -6.66 16 18 H 0.07 1.75 6.24 -52.48 -0.33 1.42 16 19 C 0.00 0.06 5.03 -17.43 -0.09 -0.02 16 20 N -0.90 -25.36 9.59 55.49 0.53 -24.82 16 21 Si 0.90 21.65 29.57 -169.99 -5.03 16.63 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H 0.05 1.00 7.43 -51.93 -0.39 0.62 16 26 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 29 H 0.05 0.93 5.92 -51.93 -0.31 0.62 16 30 H 0.08 0.99 7.82 -51.93 -0.41 0.59 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.69 7.73 -51.93 -0.40 0.29 16 33 H 0.07 1.06 5.69 -51.93 -0.30 0.77 16 34 H 0.16 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.03 0.60 6.57 -51.93 -0.34 0.26 16 36 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 37 H 0.03 0.73 7.09 -51.93 -0.37 0.36 16 38 H 0.07 1.96 6.74 -51.93 -0.35 1.61 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 6.95 8.32 -40.82 -0.34 6.62 16 LS Contribution 311.03 15.07 4.69 4.69 Total: -1.00 -29.22 311.03 -6.61 -35.83 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.96 Total: -0.40 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.81 Total: 4.35 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.91 Total: -49.88 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.28 Total: -5.58 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.08 Total: -5.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.22 -6.61 -35.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.433 kcal (2) G-P(sol) polarization free energy of solvation -29.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds