Wall clock time and date at job start Wed Apr 15 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.78940 * 2 1 4 4 C 1.53239 * 109.63076 * 120.48810 * 2 1 3 5 5 N 1.46904 * 109.33818 * 65.87841 * 4 2 1 6 6 C 1.46900 * 110.99872 * 187.25405 * 5 4 2 7 7 C 1.53007 * 109.46930 * 75.60737 * 6 5 4 8 8 O 1.42903 * 109.46959 * 66.06555 * 7 6 5 9 9 C 1.42904 * 113.99716 * 179.97438 * 8 7 6 10 10 F 1.39896 * 109.47157 * 300.00424 * 9 8 7 11 11 F 1.39901 * 109.46511 * 60.00474 * 9 8 7 12 12 C 1.46898 * 111.27122 * 63.10722 * 5 4 2 13 13 C 1.53238 * 109.33985 * 296.89702 * 12 5 4 14 14 H 1.09004 * 109.62692 * 294.12223 * 13 12 5 15 15 C 1.52999 * 109.63111 * 173.73015 * 13 12 5 16 16 N 1.47081 * 109.63049 * 239.51660 * 2 1 3 17 17 C 1.36939 * 120.88056 * 111.45208 * 16 2 1 18 18 H 1.08000 * 119.99621 * 150.88806 * 17 16 2 19 19 C 1.38812 * 119.99774 * 330.88084 * 17 16 2 20 20 N 1.31615 * 120.00392 * 345.51277 * 19 17 16 21 21 Si 1.86801 * 119.99450 * 165.51074 * 19 17 16 22 22 H 1.48499 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46891 * 120.00334 * 21 19 17 24 24 H 1.48501 * 109.47117 * 239.99917 * 21 19 17 25 25 H 1.09002 * 109.47158 * 299.51036 * 1 2 3 26 26 H 1.08996 * 109.47134 * 59.51438 * 1 2 3 27 27 H 1.09003 * 109.46883 * 179.51276 * 1 2 3 28 28 H 1.09003 * 109.49216 * 305.92338 * 4 2 1 29 29 H 1.09000 * 109.49518 * 185.83811 * 4 2 1 30 30 H 1.09004 * 109.47335 * 195.60426 * 6 5 4 31 31 H 1.08992 * 109.47247 * 315.61105 * 6 5 4 32 32 H 1.09006 * 109.46759 * 186.06566 * 7 6 5 33 33 H 1.08994 * 109.47166 * 306.06607 * 7 6 5 34 34 H 1.09000 * 109.47038 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.48990 * 56.85422 * 12 5 4 36 36 H 1.08990 * 109.49513 * 176.93269 * 12 5 4 37 37 H 1.09004 * 109.46778 * 60.00208 * 15 13 12 38 38 H 1.09000 * 109.47306 * 179.97438 * 15 13 12 39 39 H 1.08997 * 109.47234 * 299.99971 * 15 13 12 40 40 H 0.97001 * 119.99759 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 1.2438 5 7 1.6747 -2.1515 1.1607 6 6 1.9978 -2.8538 2.4099 7 6 0.9671 -2.4903 3.4806 8 8 -0.3123 -3.0033 3.1039 9 6 -1.3521 -2.7178 4.0417 10 9 -1.0300 -3.2812 5.2810 11 9 -1.4874 -1.3323 4.1802 12 6 2.3147 -2.8027 0.0100 13 6 1.8110 -2.1553 -1.2844 14 1 0.7480 -2.3624 -1.4078 15 6 2.5864 -2.7192 -2.4767 16 7 2.0241 -0.7028 -1.1938 17 6 2.6651 -0.0227 -2.1948 18 1 3.4078 -0.5234 -2.7980 19 6 2.3599 1.3102 -2.4341 20 7 1.2759 1.8416 -1.9098 21 14 3.4880 2.3496 -3.5001 22 1 4.6300 1.5224 -3.9657 23 1 2.7323 2.8550 -4.6743 24 1 3.9981 3.4977 -2.7083 25 1 -0.3633 0.5062 0.8944 26 1 -0.3633 0.5213 -0.8856 27 1 -0.3633 -1.0277 -0.0087 28 1 1.5992 -0.2918 2.1357 29 1 3.1298 -0.6418 1.2961 30 1 1.9783 -3.9299 2.2373 31 1 2.9913 -2.5577 2.7466 32 1 1.2661 -2.9243 4.4349 33 1 0.9099 -1.4061 3.5766 34 1 -2.2906 -3.1409 3.6835 35 1 3.3959 -2.6834 0.0796 36 1 2.0649 -3.8636 0.0071 37 1 2.4373 -3.7977 -2.5297 38 1 2.2259 -2.2573 -3.3958 39 1 3.6480 -2.5047 -2.3540 40 1 1.0630 2.7731 -2.0768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:27 Heat of formation + Delta-G solvation = -125.646352 kcal Electronic energy + Delta-G solvation = -23514.937884 eV Core-core repulsion = 19808.048762 eV Total energy + Delta-G solvation = -3706.889123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.03824 -47.14957 -38.74471 -37.44523 -34.72484 -32.51820 -31.39714 -29.44579 -27.58144 -25.96251 -25.40528 -24.34373 -22.99534 -21.43119 -20.39334 -18.60561 -18.24879 -17.73025 -17.67411 -16.22632 -15.69008 -14.90804 -14.85885 -14.21101 -14.12754 -14.04705 -13.77694 -13.62750 -13.50322 -13.08861 -12.89566 -12.86162 -12.24216 -11.79804 -11.77763 -11.49357 -11.44067 -11.14277 -10.91870 -10.77917 -10.63164 -10.40332 -10.38110 -10.27624 -9.97116 -9.82823 -9.39080 -9.13705 -8.41804 -7.71217 -6.52608 -5.70447 -3.14583 3.09364 3.39272 3.47656 3.48795 3.70605 4.33127 4.53166 4.53899 4.81119 5.11405 5.21952 5.33674 5.42200 5.46406 5.58916 5.83671 5.87415 5.96586 6.15174 6.18121 6.27263 6.37051 6.40111 6.49056 6.61550 6.69605 6.93241 7.02527 7.11644 7.20242 7.32186 7.59935 7.65139 7.80411 7.91874 8.05058 8.53719 9.31062 9.92589 10.52296 11.36708 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.004942 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.265612 B = 5664.150879 C = 6244.228120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.201 3.799 3 H 0.091 0.909 4 C 0.039 3.961 5 N -0.523 5.523 6 C 0.056 3.944 7 C 0.058 3.942 8 O -0.363 6.363 9 C 0.401 3.599 10 F -0.218 7.218 11 F -0.209 7.209 12 C 0.051 3.949 13 C 0.171 3.829 14 H 0.034 0.966 15 C -0.137 4.137 16 N -0.585 5.585 17 C -0.247 4.247 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.018 0.982 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.163 0.837 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.189 -9.836 10.700 14.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.094 3.906 3 H 0.109 0.891 4 C -0.090 4.090 5 N -0.247 5.247 6 C -0.073 4.073 7 C -0.018 4.018 8 O -0.284 6.284 9 C 0.309 3.691 10 F -0.200 7.200 11 F -0.191 7.191 12 C -0.078 4.078 13 C 0.065 3.935 14 H 0.051 0.949 15 C -0.195 4.195 16 N -0.308 5.308 17 C -0.377 4.377 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.543 5.543 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 H 0.037 0.963 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.179 0.821 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.749 -9.772 10.446 14.566 hybrid contribution 1.416 0.906 0.041 1.682 sum -1.333 -8.867 10.487 13.797 Atomic orbital electron populations 1.21942 0.97773 0.99281 1.00254 1.20343 0.92745 0.95474 0.82045 0.89088 1.22939 0.97214 0.87848 1.01019 1.61881 1.58938 1.02738 1.01168 1.22079 0.94531 0.99680 0.90976 1.22754 0.82398 0.99220 0.97460 1.88527 1.18341 1.76830 1.44744 1.23185 0.94473 0.75378 0.76056 1.93030 1.94325 1.85073 1.47558 1.93070 1.96291 1.33931 1.95775 1.22665 0.95836 0.97026 0.92302 1.20460 0.96517 0.85877 0.90692 0.94881 1.21791 1.00414 0.97911 0.99358 1.44259 1.67017 1.01080 1.18460 1.19210 1.14206 0.93591 1.10710 0.91353 1.25067 0.96395 0.98924 0.99188 1.70002 1.23493 1.12975 1.47831 0.86294 0.80377 0.80526 0.79978 1.20471 1.21858 1.21799 0.96311 0.90804 0.94684 0.92397 0.95924 0.90449 0.93327 0.92311 0.91664 0.82080 0.95595 0.92187 0.94283 0.91873 0.93053 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.97 37.16 0.33 -2.78 16 2 C 0.20 4.73 2.34 -67.49 -0.16 4.57 16 3 H 0.09 2.44 6.24 -51.93 -0.32 2.11 16 4 C 0.04 0.77 4.84 -3.70 -0.02 0.75 16 5 N -0.52 -9.35 4.02 -234.32 -0.94 -10.29 16 6 C 0.06 0.80 5.39 -3.82 -0.02 0.78 16 7 C 0.06 0.78 5.85 37.16 0.22 0.99 16 8 O -0.36 -5.09 10.60 -35.23 -0.37 -5.46 16 9 C 0.40 4.52 6.30 101.05 0.64 5.15 16 10 F -0.22 -2.53 16.88 2.25 0.04 -2.49 16 11 F -0.21 -2.83 16.88 2.25 0.04 -2.79 16 12 C 0.05 0.93 4.88 -3.70 -0.02 0.91 16 13 C 0.17 3.60 3.24 -67.49 -0.22 3.38 16 14 H 0.03 0.75 7.60 -51.93 -0.39 0.36 16 15 C -0.14 -2.57 7.95 37.16 0.30 -2.28 16 16 N -0.58 -14.31 2.72 -157.00 -0.43 -14.73 16 17 C -0.25 -6.58 8.67 -15.06 -0.13 -6.71 16 18 H 0.07 1.79 6.25 -52.49 -0.33 1.46 16 19 C 0.00 0.07 4.98 -17.43 -0.09 -0.02 16 20 N -0.90 -25.31 9.70 55.49 0.54 -24.77 16 21 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.94 6.76 -51.93 -0.35 1.59 16 27 H 0.03 0.80 7.06 -51.93 -0.37 0.43 16 28 H 0.06 1.07 6.60 -51.93 -0.34 0.73 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.02 7.77 -51.93 -0.40 0.62 16 31 H 0.05 0.65 8.00 -51.93 -0.42 0.23 16 32 H 0.06 0.67 7.73 -51.93 -0.40 0.27 16 33 H 0.07 0.94 6.24 -51.93 -0.32 0.62 16 34 H 0.16 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.96 7.90 -51.93 -0.41 0.55 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 39 H 0.05 0.98 7.53 -51.93 -0.39 0.58 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 317.44 15.07 4.78 4.78 Total: -1.00 -29.35 317.44 -6.64 -35.99 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.10 Total: -1.48 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.83 Total: 4.76 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.83 Total: -49.79 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.37 Total: -5.46 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.08 Total: -5.28 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.35 -6.64 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.660 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds