Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47019 * 119.99703 * 2 1 3 5 5 N 1.46498 * 109.47083 * 65.00028 * 4 2 1 6 6 N 1.40587 * 127.38074 * 275.24805 * 5 4 2 7 7 N 1.28913 * 106.81375 * 180.26391 * 6 5 4 8 8 N 1.28419 * 110.31578 * 359.76576 * 7 6 5 9 9 C 1.31474 * 110.51028 * 0.02562 * 8 7 6 10 10 N 1.38373 * 126.43773 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00138 * 293.55935 * 10 9 8 12 12 C 1.50704 * 109.47418 * 199.36722 * 11 10 9 13 13 H 1.08005 * 119.99472 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00087 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00195 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99716 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47209 * 60.00110 * 16 14 12 18 18 H 1.48499 * 109.46942 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47407 * 299.99786 * 16 14 12 20 20 C 1.46897 * 111.00325 * 57.51757 * 10 9 8 21 21 C 1.52994 * 109.47302 * 66.04258 * 20 10 9 22 22 C 1.47202 * 109.47256 * 180.02562 * 21 20 10 23 23 N 6.03170 * 104.44330 * 230.28881 * 2 1 3 24 24 H 1.08999 * 109.47199 * 300.00427 * 1 2 3 25 25 H 1.08999 * 109.46813 * 60.00040 * 1 2 3 26 26 H 1.08993 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47199 * 239.99573 * 2 1 3 28 28 H 1.09007 * 109.47334 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47234 * 299.99702 * 3 2 1 30 30 H 1.08999 * 109.47423 * 59.99710 * 3 2 1 31 31 H 1.09001 * 109.47167 * 305.00106 * 4 2 1 32 32 H 1.09004 * 109.47304 * 185.00309 * 4 2 1 33 33 H 1.08999 * 109.46993 * 79.36947 * 11 10 9 34 34 H 1.09001 * 109.47264 * 319.36898 * 11 10 9 35 35 H 0.96998 * 120.00208 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47429 * 186.04642 * 20 10 9 37 37 H 1.09003 * 109.46624 * 306.04045 * 20 10 9 38 38 H 1.09000 * 109.46992 * 300.00025 * 21 20 10 39 39 H 1.09003 * 109.47454 * 60.00296 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 7 0.4304 -2.6997 1.5927 7 7 0.5170 -3.9670 1.3728 8 7 1.6632 -4.2550 0.8704 9 6 2.3932 -3.1698 0.7363 10 7 3.6794 -3.1019 0.2304 11 6 4.6303 -3.7875 1.1157 12 6 6.0281 -3.3092 0.8185 13 1 6.1936 -2.5700 0.0486 14 6 7.0957 -3.8159 1.5286 15 7 6.8943 -4.7164 2.4658 16 14 8.8285 -3.2234 1.1597 17 1 8.9095 -1.7582 1.3869 18 1 9.7896 -3.9165 2.0546 19 1 9.1637 -3.5242 -0.2554 20 6 3.7392 -3.6493 -1.1314 21 6 2.9292 -2.7583 -2.0752 22 6 2.9886 -3.3073 -3.4398 23 7 3.0345 -3.7320 -4.4934 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6443 1.2953 33 1 4.5712 -4.8631 0.9489 34 1 4.3839 -3.5668 2.1543 35 1 7.6453 -5.0726 2.9656 36 1 4.7765 -3.6829 -1.4643 37 1 3.3232 -4.6568 -1.1364 38 1 1.8918 -2.7248 -1.7423 39 1 3.3452 -1.7508 -2.0702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334464692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 140.028345 kcal Electronic energy + Delta-G solvation = -22167.099974 eV Core-core repulsion = 18954.713308 eV Total energy + Delta-G solvation = -3212.386666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.62441 -37.93099 -37.00126 -36.32862 -33.27634 -32.98121 -31.73775 -30.46998 -27.52198 -27.31599 -26.68627 -23.99526 -22.89542 -22.75063 -20.78888 -20.19282 -17.57699 -17.26401 -16.65612 -16.24735 -15.89118 -15.17263 -15.04793 -14.82558 -14.13754 -13.87524 -13.63446 -13.58081 -13.11605 -12.65412 -12.57965 -12.51179 -12.35165 -12.28607 -11.97425 -11.78277 -11.64467 -11.28027 -11.16216 -11.04832 -10.97339 -10.86608 -10.81763 -10.62795 -10.32403 -10.02962 -9.81356 -9.47977 -8.71034 -8.28971 -6.25111 -4.31104 1.33003 2.05350 2.64583 2.76593 2.81713 3.20926 3.27219 3.27653 3.76707 4.20329 4.37500 4.48172 4.53627 4.80308 4.89459 4.98654 5.09366 5.12204 5.17081 5.30192 5.41762 5.47231 5.51363 5.62419 5.68290 5.78708 5.86781 5.91054 5.95156 6.06736 6.11833 6.16504 6.32852 6.73945 6.92378 7.36171 7.43647 7.58969 7.78187 8.04861 8.74112 8.87151 9.34777 10.84943 Molecular weight = 278.16amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.006038 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.865378 B = 4635.862842 C = 5027.521793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.144 4.144 4 C 0.129 3.871 5 N -0.365 5.365 6 N -0.098 5.098 7 N -0.046 5.046 8 N -0.356 5.356 9 C 0.430 3.570 10 N -0.465 5.465 11 C 0.207 3.793 12 C -0.522 4.522 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.903 3.097 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.073 3.927 21 C -0.030 4.030 22 C 0.217 3.783 23 N -0.439 5.439 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.021 0.979 34 H 0.034 0.966 35 H 0.267 0.733 36 H 0.114 0.886 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 11.544 -3.618 14.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.202 4.202 4 C 0.007 3.993 5 N -0.163 5.163 6 N -0.084 5.084 7 N -0.042 5.042 8 N -0.213 5.213 9 C 0.064 3.936 10 N -0.193 5.193 11 C 0.085 3.915 12 C -0.560 4.560 13 H 0.089 0.911 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.730 3.270 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.055 4.055 21 C -0.071 4.071 22 C -0.101 4.101 23 N -0.117 5.117 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.901 10.593 -4.676 14.605 hybrid contribution 1.434 0.363 0.370 1.524 sum -7.467 10.956 -4.306 13.941 Atomic orbital electron populations 1.21890 0.94376 1.02571 1.01918 1.21524 0.96877 0.96968 0.97680 1.21757 1.01800 0.94275 1.02323 1.22163 1.02900 0.74263 0.99959 1.51590 1.11099 1.09617 1.44017 1.82459 1.00638 1.03820 1.21491 1.77889 1.12017 1.05796 1.08516 1.74991 1.00686 1.24061 1.21555 1.23572 0.93198 0.83425 0.93434 1.59506 0.97010 1.58888 1.03932 1.19959 0.88480 0.92940 0.90160 1.20953 0.89430 1.24755 1.20906 0.91139 1.24971 0.99560 0.94777 0.94799 1.69943 1.32141 1.28291 1.22376 0.86479 0.83210 0.78919 0.78372 1.20024 1.21237 1.19994 1.22064 1.02672 0.95724 0.85086 1.19403 1.02871 1.01241 0.83549 1.28969 0.93042 0.93409 0.94654 1.81235 1.08865 1.08965 1.12597 0.92270 0.92529 0.92217 0.90119 0.91631 0.91978 0.92293 0.88425 0.86371 0.96130 0.94838 0.92367 0.86756 0.92127 0.88946 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.02 37.16 0.34 -1.04 16 2 C -0.11 -0.98 3.13 -90.62 -0.28 -1.27 16 3 C -0.14 -1.00 9.19 37.16 0.34 -0.66 16 4 C 0.13 1.43 5.90 -4.04 -0.02 1.41 16 5 N -0.37 -5.46 3.36 -61.86 -0.21 -5.66 16 6 N -0.10 -1.62 12.71 60.35 0.77 -0.85 16 7 N -0.05 -0.86 13.38 60.35 0.81 -0.06 16 8 N -0.36 -6.88 11.94 30.09 0.36 -6.52 16 9 C 0.43 7.42 5.29 -320.43 -1.69 5.73 16 10 N -0.47 -8.08 4.41 -176.23 -0.78 -8.86 16 11 C 0.21 4.67 4.70 -4.97 -0.02 4.64 16 12 C -0.52 -12.48 8.56 -34.44 -0.29 -12.77 16 13 H 0.07 1.59 7.76 -52.48 -0.41 1.18 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -24.30 13.29 55.43 0.74 -23.57 16 16 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.07 1.12 4.70 -3.83 -0.02 1.10 16 21 C -0.03 -0.35 5.13 -29.52 -0.15 -0.50 16 22 C 0.22 2.96 15.44 -20.73 -0.32 2.64 16 23 N -0.44 -7.04 18.54 42.19 0.78 -6.26 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.68 6.73 -51.93 -0.35 0.33 16 27 H 0.08 0.73 7.02 -51.93 -0.36 0.37 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.12 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.02 0.52 8.00 -51.93 -0.42 0.10 16 34 H 0.03 0.84 7.92 -51.93 -0.41 0.43 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.11 1.81 7.38 -51.93 -0.38 1.42 16 37 H 0.06 0.99 7.90 -51.93 -0.41 0.58 16 38 H 0.09 1.08 7.32 -51.93 -0.38 0.70 16 39 H 0.12 1.11 7.68 -51.93 -0.40 0.71 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -28.91 337.99 -5.30 -34.22 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.61 Total: -2.79 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.23 Total: 0.75 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 2.47 Total: -51.78 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.91 -5.30 -34.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334464692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.244 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds