Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47019 * 119.99703 * 2 1 3 5 5 N 1.46498 * 109.47083 * 65.00028 * 4 2 1 6 6 N 1.40587 * 127.38074 * 275.24805 * 5 4 2 7 7 N 1.28913 * 106.81375 * 180.26391 * 6 5 4 8 8 N 1.28419 * 110.31578 * 359.76576 * 7 6 5 9 9 C 1.31474 * 110.51028 * 0.02562 * 8 7 6 10 10 N 1.38373 * 126.43773 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00138 * 293.55935 * 10 9 8 12 12 C 1.50704 * 109.47418 * 199.36722 * 11 10 9 13 13 H 1.08005 * 119.99472 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00087 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00195 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99716 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47209 * 60.00110 * 16 14 12 18 18 H 1.48499 * 109.46942 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47407 * 299.99786 * 16 14 12 20 20 C 1.46897 * 111.00325 * 57.51757 * 10 9 8 21 21 C 1.52994 * 109.47302 * 66.04258 * 20 10 9 22 22 C 1.47202 * 109.47256 * 180.02562 * 21 20 10 23 23 N 6.03170 * 104.44330 * 230.28881 * 2 1 3 24 24 H 1.08999 * 109.47199 * 300.00427 * 1 2 3 25 25 H 1.08999 * 109.46813 * 60.00040 * 1 2 3 26 26 H 1.08993 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47199 * 239.99573 * 2 1 3 28 28 H 1.09007 * 109.47334 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47234 * 299.99702 * 3 2 1 30 30 H 1.08999 * 109.47423 * 59.99710 * 3 2 1 31 31 H 1.09001 * 109.47167 * 305.00106 * 4 2 1 32 32 H 1.09004 * 109.47304 * 185.00309 * 4 2 1 33 33 H 1.08999 * 109.46993 * 79.36947 * 11 10 9 34 34 H 1.09001 * 109.47264 * 319.36898 * 11 10 9 35 35 H 0.96998 * 120.00208 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47429 * 186.04642 * 20 10 9 37 37 H 1.09003 * 109.46624 * 306.04045 * 20 10 9 38 38 H 1.09000 * 109.46992 * 300.00025 * 21 20 10 39 39 H 1.09003 * 109.47454 * 60.00296 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 7 0.4304 -2.6997 1.5927 7 7 0.5170 -3.9670 1.3728 8 7 1.6632 -4.2550 0.8704 9 6 2.3932 -3.1698 0.7363 10 7 3.6794 -3.1019 0.2304 11 6 4.6303 -3.7875 1.1157 12 6 6.0281 -3.3092 0.8185 13 1 6.1936 -2.5700 0.0486 14 6 7.0957 -3.8159 1.5286 15 7 6.8943 -4.7164 2.4658 16 14 8.8285 -3.2234 1.1597 17 1 8.9095 -1.7582 1.3869 18 1 9.7896 -3.9165 2.0546 19 1 9.1637 -3.5242 -0.2554 20 6 3.7392 -3.6493 -1.1314 21 6 2.9292 -2.7583 -2.0752 22 6 2.9886 -3.3073 -3.4398 23 7 3.0345 -3.7320 -4.4934 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6443 1.2953 33 1 4.5712 -4.8631 0.9489 34 1 4.3839 -3.5668 2.1543 35 1 7.6453 -5.0726 2.9656 36 1 4.7765 -3.6829 -1.4643 37 1 3.3232 -4.6568 -1.1364 38 1 1.8918 -2.7248 -1.7423 39 1 3.3452 -1.7508 -2.0702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334464692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 122.900196 kcal Electronic energy + Delta-G solvation = -22167.842706 eV Core-core repulsion = 18954.713308 eV Total energy + Delta-G solvation = -3213.129398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.00238 -39.31688 -37.90592 -37.56780 -34.86496 -34.34919 -33.01011 -31.95173 -28.95465 -28.12858 -27.85411 -25.30961 -24.61675 -24.02820 -21.99854 -21.19393 -18.80003 -18.68584 -18.12663 -17.52114 -17.39881 -16.52504 -16.29776 -15.95178 -15.38846 -15.02504 -14.91653 -14.73794 -14.23850 -14.05672 -13.83234 -13.71745 -13.61009 -13.34432 -13.01263 -12.88421 -12.79213 -12.66833 -12.51608 -12.39388 -12.11745 -12.07367 -12.04572 -11.89078 -11.64080 -11.51174 -11.14279 -10.97234 -10.60408 -9.88900 -8.18864 -6.30403 -0.02101 0.80846 1.21485 1.51917 1.52878 1.60212 1.62341 1.72011 2.39401 2.58219 3.11365 3.17119 3.37096 3.68953 3.76092 3.88278 4.05190 4.08014 4.19100 4.37409 4.40889 4.52537 4.64677 4.72358 4.79142 4.84409 4.89025 4.94882 5.01396 5.10980 5.13698 5.23710 5.26928 5.44982 5.53266 5.61409 5.77077 5.91813 6.26656 6.49481 6.83954 7.40126 7.47593 8.92212 Molecular weight = 278.16amu Principal moments of inertia in cm(-1) A = 0.012883 B = 0.006038 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.865378 B = 4635.862842 C = 5027.521793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.139 4.139 4 C 0.117 3.883 5 N -0.347 5.347 6 N -0.088 5.088 7 N -0.068 5.068 8 N -0.383 5.383 9 C 0.420 3.580 10 N -0.447 5.447 11 C 0.226 3.774 12 C -0.519 4.519 13 H 0.089 0.911 14 C 0.008 3.992 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.261 1.261 18 H -0.295 1.295 19 H -0.266 1.266 20 C 0.071 3.929 21 C -0.013 4.013 22 C 0.241 3.759 23 N -0.480 5.480 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.120 0.880 33 H -0.013 1.013 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.112 0.888 37 H 0.044 0.956 38 H 0.100 0.900 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 14.337 -4.594 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.196 4.196 4 C -0.004 4.004 5 N -0.145 5.145 6 N -0.074 5.074 7 N -0.064 5.064 8 N -0.240 5.240 9 C 0.053 3.947 10 N -0.174 5.174 11 C 0.101 3.899 12 C -0.557 4.557 13 H 0.107 0.893 14 C -0.191 4.191 15 N -0.574 5.574 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.221 1.221 19 H -0.191 1.191 20 C -0.057 4.057 21 C -0.053 4.053 22 C -0.076 4.076 23 N -0.158 5.158 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.005 0.995 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.656 13.426 -5.676 16.953 hybrid contribution 1.261 -0.454 0.722 1.522 sum -7.395 12.972 -4.954 15.732 Atomic orbital electron populations 1.21871 0.94524 1.01169 1.02969 1.21521 0.96613 0.97968 0.96233 1.21735 1.01944 0.92652 1.03315 1.22661 1.03290 0.72205 1.02202 1.51823 1.10008 1.10588 1.42080 1.82380 1.01278 1.03272 1.20517 1.77879 1.12133 1.06630 1.09736 1.74897 1.01229 1.25601 1.22295 1.23424 0.93069 0.83790 0.94370 1.59378 0.96396 1.57696 1.03940 1.19477 0.89597 0.91294 0.89495 1.21335 0.89730 1.24187 1.20446 0.89338 1.25862 1.03727 0.94894 0.94654 1.70096 1.33109 1.30206 1.24020 0.85438 0.78186 0.78847 0.78195 1.18597 1.22119 1.19076 1.22076 1.03148 0.95907 0.84587 1.19342 1.02798 1.01789 0.81404 1.29106 0.91737 0.92268 0.94507 1.81266 1.10278 1.10197 1.14053 0.91697 0.91115 0.94730 0.89978 0.91367 0.90834 0.91528 0.86755 0.86237 0.99518 0.97943 0.92693 0.87030 0.93734 0.88239 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.02 71.98 0.65 -1.67 16 2 C -0.10 -1.51 3.13 -10.79 -0.03 -1.55 16 3 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 4 C 0.12 2.30 5.90 86.38 0.51 2.81 16 5 N -0.35 -9.95 3.36 -349.63 -1.17 -11.12 16 6 N -0.09 -2.85 12.71 37.02 0.47 -2.38 16 7 N -0.07 -2.56 13.38 37.02 0.50 -2.07 16 8 N -0.38 -15.01 11.94 -58.70 -0.70 -15.71 16 9 C 0.42 14.36 5.29 260.66 1.38 15.74 16 10 N -0.45 -15.27 4.41 -711.47 -3.14 -18.41 16 11 C 0.23 10.37 4.70 85.56 0.40 10.77 16 12 C -0.52 -24.50 8.56 25.60 0.22 -24.29 16 13 H 0.09 3.79 7.76 -2.91 -0.02 3.77 16 14 C 0.01 0.39 5.46 84.65 0.46 0.85 16 15 N -0.93 -52.15 13.29 21.45 0.28 -51.87 16 16 Si 0.97 39.38 29.54 68.60 2.03 41.40 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.30 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 20 C 0.07 2.12 4.70 86.30 0.41 2.53 16 21 C -0.01 -0.28 5.13 28.79 0.15 -0.13 16 22 C 0.24 6.13 15.44 89.43 1.38 7.51 16 23 N -0.48 -14.86 18.54 20.02 0.37 -14.49 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.03 0.72 6.73 -2.39 -0.02 0.70 16 27 H 0.08 1.19 7.02 -2.39 -0.02 1.18 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.12 2.41 8.10 -2.38 -0.02 2.39 16 33 H -0.01 -0.69 8.00 -2.39 -0.02 -0.70 16 34 H 0.00 0.13 7.92 -2.39 -0.02 0.11 16 35 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.11 3.40 7.38 -2.39 -0.02 3.38 16 37 H 0.04 1.47 7.90 -2.39 -0.02 1.46 16 38 H 0.10 2.08 7.32 -2.39 -0.02 2.06 16 39 H 0.15 2.25 7.68 -2.39 -0.02 2.23 16 Total: -1.00 -63.76 337.99 5.86 -57.90 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.05 Total: 4.92 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 6.18 Total: 11.83 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -3.39 Total: -116.05 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Total: -63.76 5.86 -57.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334464692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.798 kcal (2) G-P(sol) polarization free energy of solvation -63.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds