Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47322 * 240.00097 * 2 1 3 5 5 N 1.46503 * 109.47236 * 119.99849 * 2 1 3 6 6 N 1.40588 * 127.38108 * 189.64542 * 5 2 1 7 7 N 1.28906 * 106.81608 * 180.02562 * 6 5 2 8 8 N 1.28426 * 110.31787 * 359.72735 * 7 6 5 9 9 C 1.31480 * 110.50257 * 0.45752 * 8 7 6 10 10 N 1.38378 * 126.43548 * 179.81003 * 9 8 7 11 11 C 1.46893 * 111.00495 * 278.15224 * 10 9 8 12 12 C 1.50703 * 109.47573 * 200.97553 * 11 10 9 13 13 H 1.08005 * 119.99516 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99746 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47240 * 90.00231 * 16 14 12 18 18 H 1.48509 * 109.46947 * 210.00030 * 16 14 12 19 19 H 1.48493 * 109.47424 * 329.99748 * 16 14 12 20 20 C 1.46902 * 110.99834 * 42.10874 * 10 9 8 21 21 C 1.53004 * 109.47380 * 69.99861 * 20 10 9 22 22 C 1.47198 * 109.47247 * 180.02562 * 21 20 10 23 23 N 6.97121 * 62.16298 * 88.23165 * 2 1 3 24 24 H 1.09006 * 109.46851 * 291.70884 * 1 2 3 25 25 H 1.08999 * 109.47721 * 51.70947 * 1 2 3 26 26 H 1.08998 * 109.47185 * 171.71411 * 1 2 3 27 27 H 1.09001 * 109.47309 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46893 * 300.00090 * 3 2 1 29 29 H 1.09003 * 109.47162 * 59.99999 * 3 2 1 30 30 H 1.09005 * 109.46873 * 307.33747 * 4 2 1 31 31 H 1.08999 * 109.47308 * 67.33348 * 4 2 1 32 32 H 1.08997 * 109.47324 * 187.34017 * 4 2 1 33 33 H 1.08999 * 109.47448 * 320.98105 * 11 10 9 34 34 H 1.09007 * 109.47173 * 80.97988 * 11 10 9 35 35 H 0.96995 * 119.99875 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47389 * 309.99257 * 20 10 9 37 37 H 1.09007 * 109.47273 * 189.99428 * 20 10 9 38 38 H 1.09007 * 109.46564 * 300.00001 * 21 20 10 39 39 H 1.09001 * 109.46834 * 59.99441 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 3.3412 -0.7473 1.6687 7 7 3.3227 -1.4567 2.7448 8 7 2.1264 -1.8470 3.0012 9 6 1.2929 -1.4110 2.0825 10 7 -0.0708 -1.6407 2.0344 11 6 -0.3628 -2.9568 1.4509 12 6 -1.7808 -2.9770 0.9412 13 1 -2.4029 -2.0997 1.0404 14 6 -2.2838 -4.1151 0.3472 15 7 -1.5261 -5.1832 0.2259 16 14 -4.0413 -4.1398 -0.2852 17 1 -4.0645 -3.6908 -1.7004 18 1 -4.5804 -5.5206 -0.1950 19 1 -4.8762 -3.2279 0.5372 20 6 -0.6739 -1.5104 3.3676 21 6 -0.6546 -0.0414 3.7948 22 6 -1.2584 0.0890 5.1309 23 7 -1.7253 0.1902 6.1616 24 1 -0.3633 0.3801 0.9548 25 1 -0.3634 0.6368 -0.8065 26 1 -0.3633 -1.0169 -0.1481 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.5734 -1.7040 -1.3173 31 1 1.7878 -0.1373 -2.1344 32 1 3.1220 -0.8363 -1.1860 33 1 0.3228 -3.1485 0.6254 34 1 -0.2393 -3.7273 2.2121 35 1 -1.8799 -5.9837 -0.1923 36 1 -0.1056 -2.1045 4.0832 37 1 -1.7038 -1.8663 3.3368 38 1 0.3753 0.3144 3.8256 39 1 -1.2230 0.5526 3.0791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354316962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 151.650320 kcal Electronic energy + Delta-G solvation = -22665.245370 eV Core-core repulsion = 19453.362671 eV Total energy + Delta-G solvation = -3211.882699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.61122 -38.07342 -37.22992 -36.26825 -33.03907 -31.94286 -31.59589 -30.42292 -27.45264 -27.28893 -26.99623 -24.09999 -23.66812 -22.66177 -20.82774 -19.86649 -17.54768 -16.87415 -16.44805 -16.13673 -15.75079 -15.01799 -14.81033 -14.18925 -14.03363 -13.89750 -13.62826 -13.25431 -13.08172 -12.52987 -12.48345 -12.42635 -12.29611 -12.17549 -11.92276 -11.63391 -11.57113 -11.28536 -11.21483 -11.05333 -10.93547 -10.87220 -10.71965 -10.57646 -10.31758 -10.00590 -9.87225 -9.44522 -8.71896 -8.16310 -6.29256 -4.35140 1.42832 2.08690 2.70507 2.82395 2.88473 3.17141 3.25735 3.27035 3.80403 4.20395 4.38755 4.46562 4.78149 4.90095 4.99728 5.06711 5.11282 5.22599 5.36722 5.49627 5.51411 5.64167 5.67327 5.79673 5.81596 5.89109 6.01159 6.09410 6.11856 6.17798 6.28682 6.47083 6.73217 6.81899 6.90632 7.33010 7.42017 7.64865 7.74710 8.00458 8.71120 8.93477 9.31269 10.80685 Molecular weight = 278.16amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.007584 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.506102 B = 3691.269999 C = 4836.102385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.178 3.822 3 C -0.151 4.151 4 C -0.159 4.159 5 N -0.359 5.359 6 N -0.101 5.101 7 N -0.047 5.047 8 N -0.365 5.365 9 C 0.431 3.569 10 N -0.458 5.458 11 C 0.205 3.795 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.271 1.271 20 C 0.068 3.932 21 C -0.027 4.027 22 C 0.219 3.781 23 N -0.443 5.443 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 11.272 -3.502 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.095 3.905 3 C -0.209 4.209 4 C -0.217 4.217 5 N -0.159 5.159 6 N -0.088 5.088 7 N -0.043 5.043 8 N -0.223 5.223 9 C 0.065 3.935 10 N -0.185 5.185 11 C 0.082 3.918 12 C -0.558 4.558 13 H 0.091 0.909 14 C -0.141 4.141 15 N -0.527 5.527 16 Si 0.729 3.271 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.061 4.061 21 C -0.068 4.068 22 C -0.099 4.099 23 N -0.120 5.120 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.123 0.877 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.473 11.448 -1.779 12.094 hybrid contribution -1.038 -0.577 -1.002 1.553 sum 2.435 10.871 -2.780 11.482 Atomic orbital electron populations 1.22405 0.89411 1.06651 1.03011 1.21088 0.96721 0.91782 0.80901 1.22129 1.02394 0.93376 1.03035 1.22230 1.01981 1.01759 0.95708 1.51887 1.06266 1.36454 1.21264 1.82395 0.96273 1.20819 1.09263 1.77847 1.13655 1.05843 1.06932 1.74917 0.96392 1.24863 1.26119 1.23564 0.93012 0.90265 0.86664 1.59811 0.98764 1.37350 1.22589 1.19984 0.98276 0.79047 0.94460 1.20972 0.96064 0.99170 1.39589 0.90913 1.24971 0.98180 0.95223 0.95688 1.69950 1.36562 1.03101 1.43074 0.86437 0.83917 0.77500 0.79261 1.20494 1.21209 1.19560 1.22079 1.02830 0.93056 0.88108 1.19335 1.01050 1.00370 0.86041 1.28976 0.93191 0.93091 0.94633 1.81188 1.09910 1.08702 1.12217 0.90631 0.91310 0.87690 0.91329 0.90286 0.91958 0.91007 0.90242 0.91758 0.94921 0.96291 0.92421 0.91749 0.86946 0.88773 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 7.09 37.15 0.26 -1.69 16 2 C 0.18 2.24 1.38 -131.82 -0.18 2.06 16 3 C -0.15 -1.50 8.62 37.16 0.32 -1.17 16 4 C -0.16 -1.92 8.81 37.16 0.33 -1.60 16 5 N -0.36 -5.68 3.37 -49.14 -0.17 -5.85 16 6 N -0.10 -1.76 13.74 60.35 0.83 -0.93 16 7 N -0.05 -0.89 13.38 60.35 0.81 -0.08 16 8 N -0.36 -7.01 11.46 30.10 0.35 -6.66 16 9 C 0.43 7.50 5.33 -320.42 -1.71 5.79 16 10 N -0.46 -7.76 1.52 -176.22 -0.27 -8.03 16 11 C 0.21 4.42 3.82 -4.98 -0.02 4.40 16 12 C -0.52 -11.84 7.90 -34.44 -0.27 -12.11 16 13 H 0.07 1.57 7.81 -52.48 -0.41 1.16 16 14 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.89 -23.59 13.29 55.43 0.74 -22.86 16 16 Si 0.90 19.06 29.54 -169.99 -5.02 14.04 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 C 0.07 1.04 4.65 -3.82 -0.02 1.02 16 21 C -0.03 -0.33 5.68 -29.52 -0.17 -0.49 16 22 C 0.22 3.05 15.43 -20.76 -0.32 2.73 16 23 N -0.44 -7.24 18.54 42.15 0.78 -6.46 16 24 H 0.07 0.91 6.75 -51.93 -0.35 0.56 16 25 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.10 1.67 5.63 -51.93 -0.29 1.38 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 34 H 0.02 0.47 7.98 -51.92 -0.41 0.05 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.06 1.06 7.56 -51.93 -0.39 0.66 16 37 H 0.11 1.76 7.43 -51.92 -0.39 1.38 16 38 H 0.09 1.13 7.52 -51.92 -0.39 0.74 16 39 H 0.12 1.14 7.76 -51.93 -0.40 0.74 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -27.82 331.89 -4.37 -32.18 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.54 Total: -0.75 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.87 Total: 0.38 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 3.07 Total: -50.86 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.82 -4.37 -32.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354316962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.835 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds