Wall clock time and date at job start Wed Apr 15 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47322 * 240.00097 * 2 1 3 5 5 N 1.46503 * 109.47236 * 119.99849 * 2 1 3 6 6 N 1.40588 * 127.38108 * 189.64542 * 5 2 1 7 7 N 1.28906 * 106.81608 * 180.02562 * 6 5 2 8 8 N 1.28426 * 110.31787 * 359.72735 * 7 6 5 9 9 C 1.31480 * 110.50257 * 0.45752 * 8 7 6 10 10 N 1.38378 * 126.43548 * 179.81003 * 9 8 7 11 11 C 1.46893 * 111.00495 * 278.15224 * 10 9 8 12 12 C 1.50703 * 109.47573 * 200.97553 * 11 10 9 13 13 H 1.08005 * 119.99516 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00016 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99746 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47240 * 90.00231 * 16 14 12 18 18 H 1.48509 * 109.46947 * 210.00030 * 16 14 12 19 19 H 1.48493 * 109.47424 * 329.99748 * 16 14 12 20 20 C 1.46902 * 110.99834 * 42.10874 * 10 9 8 21 21 C 1.53004 * 109.47380 * 69.99861 * 20 10 9 22 22 C 1.47198 * 109.47247 * 180.02562 * 21 20 10 23 23 N 6.97121 * 62.16298 * 88.23165 * 2 1 3 24 24 H 1.09006 * 109.46851 * 291.70884 * 1 2 3 25 25 H 1.08999 * 109.47721 * 51.70947 * 1 2 3 26 26 H 1.08998 * 109.47185 * 171.71411 * 1 2 3 27 27 H 1.09001 * 109.47309 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46893 * 300.00090 * 3 2 1 29 29 H 1.09003 * 109.47162 * 59.99999 * 3 2 1 30 30 H 1.09005 * 109.46873 * 307.33747 * 4 2 1 31 31 H 1.08999 * 109.47308 * 67.33348 * 4 2 1 32 32 H 1.08997 * 109.47324 * 187.34017 * 4 2 1 33 33 H 1.08999 * 109.47448 * 320.98105 * 11 10 9 34 34 H 1.09007 * 109.47173 * 80.97988 * 11 10 9 35 35 H 0.96995 * 119.99875 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47389 * 309.99257 * 20 10 9 37 37 H 1.09007 * 109.47273 * 189.99428 * 20 10 9 38 38 H 1.09007 * 109.46564 * 300.00001 * 21 20 10 39 39 H 1.09001 * 109.46834 * 59.99441 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 3.3412 -0.7473 1.6687 7 7 3.3227 -1.4567 2.7448 8 7 2.1264 -1.8470 3.0012 9 6 1.2929 -1.4110 2.0825 10 7 -0.0708 -1.6407 2.0344 11 6 -0.3628 -2.9568 1.4509 12 6 -1.7808 -2.9770 0.9412 13 1 -2.4029 -2.0997 1.0404 14 6 -2.2838 -4.1151 0.3472 15 7 -1.5261 -5.1832 0.2259 16 14 -4.0413 -4.1398 -0.2852 17 1 -4.0645 -3.6908 -1.7004 18 1 -4.5804 -5.5206 -0.1950 19 1 -4.8762 -3.2279 0.5372 20 6 -0.6739 -1.5104 3.3676 21 6 -0.6546 -0.0414 3.7948 22 6 -1.2584 0.0890 5.1309 23 7 -1.7253 0.1902 6.1616 24 1 -0.3633 0.3801 0.9548 25 1 -0.3634 0.6368 -0.8065 26 1 -0.3633 -1.0169 -0.1481 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.5734 -1.7040 -1.3173 31 1 1.7878 -0.1373 -2.1344 32 1 3.1220 -0.8363 -1.1860 33 1 0.3228 -3.1485 0.6254 34 1 -0.2393 -3.7273 2.2121 35 1 -1.8799 -5.9837 -0.1923 36 1 -0.1056 -2.1045 4.0832 37 1 -1.7038 -1.8663 3.3368 38 1 0.3753 0.3144 3.8256 39 1 -1.2230 0.5526 3.0791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354316962.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:12 Heat of formation + Delta-G solvation = 136.640985 kcal Electronic energy + Delta-G solvation = -22665.896224 eV Core-core repulsion = 19453.362671 eV Total energy + Delta-G solvation = -3212.533553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.155 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.01152 -39.44234 -38.34014 -37.52028 -34.84855 -33.18036 -32.90490 -31.91773 -28.72664 -28.31832 -28.25970 -25.37726 -25.12632 -24.29001 -22.15019 -21.14912 -18.81852 -18.47989 -17.77674 -17.49512 -17.08271 -16.49396 -16.23362 -15.46093 -15.14062 -15.08745 -14.93748 -14.55833 -14.27225 -14.08495 -13.85134 -13.55818 -13.42205 -13.30642 -13.14460 -12.90560 -12.73146 -12.60957 -12.56844 -12.37084 -12.30885 -12.08944 -12.04199 -12.01730 -11.78020 -11.53605 -11.19359 -11.00646 -10.58852 -9.68313 -8.17783 -6.28016 0.03452 0.82121 1.24365 1.51040 1.53736 1.62490 1.66450 1.76637 2.40175 2.59948 3.15036 3.18654 3.31595 3.68727 3.82999 3.92174 3.96688 4.12962 4.26574 4.41889 4.47485 4.57807 4.68953 4.75699 4.80742 4.85305 4.86322 4.97841 5.00962 5.10630 5.12544 5.21095 5.34074 5.42931 5.65843 5.75344 5.80480 5.94329 6.27637 6.53576 6.86618 7.42402 7.50827 8.93426 Molecular weight = 278.16amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.007584 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.506102 B = 3691.269999 C = 4836.102385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 C -0.144 4.144 4 C -0.155 4.155 5 N -0.346 5.346 6 N -0.096 5.096 7 N -0.067 5.067 8 N -0.386 5.386 9 C 0.422 3.578 10 N -0.437 5.437 11 C 0.226 3.774 12 C -0.508 4.508 13 H 0.091 0.909 14 C 0.009 3.991 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.273 1.273 18 H -0.297 1.297 19 H -0.256 1.256 20 C 0.066 3.934 21 C -0.011 4.011 22 C 0.243 3.757 23 N -0.484 5.484 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.003 0.997 34 H -0.017 1.017 35 H 0.263 0.737 36 H 0.048 0.952 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 14.044 -4.712 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.084 3.916 3 C -0.202 4.202 4 C -0.213 4.213 5 N -0.146 5.146 6 N -0.083 5.083 7 N -0.063 5.063 8 N -0.244 5.244 9 C 0.056 3.944 10 N -0.163 5.163 11 C 0.102 3.898 12 C -0.546 4.546 13 H 0.109 0.891 14 C -0.190 4.190 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.224 1.224 19 H -0.180 1.180 20 C -0.063 4.063 21 C -0.051 4.051 22 C -0.075 4.075 23 N -0.162 5.162 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.021 0.979 34 H 0.001 0.999 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.456 14.265 -2.987 14.780 hybrid contribution -0.638 -1.419 -0.681 1.699 sum 1.818 12.846 -3.669 13.482 Atomic orbital electron populations 1.22363 0.88964 1.05114 1.04664 1.21605 0.97153 0.93317 0.79531 1.22132 1.02045 0.91089 1.04926 1.22236 1.01251 1.00783 0.97055 1.52235 1.05385 1.35549 1.21381 1.82310 0.97100 1.20146 1.08731 1.77837 1.13726 1.06870 1.07830 1.74839 0.96827 1.25411 1.27348 1.23512 0.92933 0.90911 0.87080 1.59749 0.98742 1.34477 1.23367 1.19496 0.97450 0.80342 0.92520 1.21296 0.96325 0.99226 1.37760 0.89141 1.25812 1.01856 0.95040 0.96282 1.70099 1.38528 1.03888 1.44938 0.85439 0.79524 0.76994 0.79044 1.19840 1.22381 1.17995 1.22097 1.02054 0.95355 0.86791 1.19284 1.01943 0.98208 0.85657 1.29141 0.92052 0.91845 0.94425 1.81218 1.11499 1.10008 1.13503 0.90019 0.87980 0.91290 0.91883 0.86987 0.91470 0.94055 0.86728 0.92338 0.97882 0.99929 0.92823 0.93399 0.87227 0.88099 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 7.09 71.98 0.51 -2.86 16 2 C 0.17 3.76 1.38 3.60 0.00 3.77 16 3 C -0.14 -2.29 8.62 71.98 0.62 -1.67 16 4 C -0.16 -3.51 8.81 71.98 0.63 -2.87 16 5 N -0.35 -10.58 3.37 -309.37 -1.04 -11.63 16 6 N -0.10 -3.28 13.74 37.02 0.51 -2.77 16 7 N -0.07 -2.55 13.38 37.02 0.50 -2.06 16 8 N -0.39 -14.98 11.46 -58.70 -0.67 -15.66 16 9 C 0.42 14.59 5.33 260.65 1.39 15.98 16 10 N -0.44 -14.63 1.52 -711.44 -1.08 -15.71 16 11 C 0.23 10.03 3.82 85.56 0.33 10.36 16 12 C -0.51 -23.00 7.90 25.60 0.20 -22.79 16 13 H 0.09 3.72 7.81 -2.91 -0.02 3.70 16 14 C 0.01 0.45 5.46 84.65 0.46 0.91 16 15 N -0.93 -51.01 13.29 21.45 0.28 -50.73 16 16 Si 0.96 38.62 29.54 68.60 2.03 40.64 16 17 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.30 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 20 C 0.07 1.95 4.65 86.30 0.40 2.35 16 21 C -0.01 -0.23 5.68 28.79 0.16 -0.07 16 22 C 0.24 6.33 15.43 89.44 1.38 7.71 16 23 N -0.48 -15.32 18.54 20.01 0.37 -14.95 16 24 H 0.08 1.67 6.75 -2.38 -0.02 1.66 16 25 H 0.10 1.58 8.13 -2.39 -0.02 1.56 16 26 H 0.07 2.08 5.63 -2.39 -0.01 2.07 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.04 1.18 8.10 -2.38 -0.02 1.16 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.00 0.16 7.89 -2.39 -0.02 0.14 16 34 H -0.02 -0.88 7.98 -2.38 -0.02 -0.90 16 35 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 36 H 0.05 1.59 7.56 -2.39 -0.02 1.57 16 37 H 0.11 3.33 7.43 -2.38 -0.02 3.32 16 38 H 0.10 2.17 7.52 -2.38 -0.02 2.15 16 39 H 0.15 2.31 7.76 -2.39 -0.02 2.29 16 Total: -1.00 -62.48 331.89 8.04 -54.44 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.05 Total: 7.59 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.10 Total: 10.82 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -1.13 Total: -113.49 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.64 kcal Total: -62.48 8.04 -54.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354316962.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.082 kcal (2) G-P(sol) polarization free energy of solvation -62.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds