Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.91280 * 2 1 4 4 C 1.53998 * 109.91576 * 238.89505 * 2 1 3 5 5 C 1.54596 * 105.14209 * 239.22551 * 4 2 1 6 6 H 1.08997 * 110.72424 * 96.58031 * 5 4 2 7 7 C 1.53000 * 110.72709 * 219.68471 * 5 4 2 8 8 N 1.46495 * 109.47280 * 182.54994 * 7 5 4 9 9 C 1.39685 * 119.99907 * 180.02562 * 8 7 5 10 10 C 1.39293 * 119.93651 * 359.97438 * 9 8 7 11 11 C 1.38703 * 120.39542 * 179.97438 * 10 9 8 12 12 F 1.35095 * 119.85786 * 180.02562 * 11 10 9 13 13 C 1.37916 * 120.27307 * 359.78469 * 11 10 9 14 14 C 1.40702 * 119.86918 * 0.48689 * 13 11 10 15 15 C 1.41414 * 120.19515 * 179.76573 * 14 13 11 16 16 H 1.07999 * 120.00214 * 207.47165 * 15 14 13 17 17 C 1.39931 * 119.99699 * 27.47321 * 15 14 13 18 18 N 1.30827 * 119.99729 * 201.99522 * 17 15 14 19 19 Si 1.86797 * 120.00191 * 21.71921 * 17 15 14 20 20 H 1.48493 * 109.47366 * 263.24120 * 19 17 15 21 21 H 1.48504 * 109.46999 * 23.24249 * 19 17 15 22 22 H 1.48502 * 109.47268 * 143.23779 * 19 17 15 23 23 C 1.38288 * 119.93597 * 179.97438 * 9 8 7 24 24 C 1.54934 * 103.08065 * 338.13571 * 5 4 2 25 25 N 1.47907 * 110.08202 * 121.21294 * 2 1 3 26 26 H 1.09006 * 109.47122 * 181.10522 * 1 2 3 27 27 H 1.09006 * 109.47040 * 301.10108 * 1 2 3 28 28 H 1.08994 * 109.47195 * 61.10034 * 1 2 3 29 29 H 1.08998 * 110.30479 * 120.30970 * 4 2 1 30 30 H 1.09004 * 110.39155 * 358.18607 * 4 2 1 31 31 H 1.09002 * 109.46451 * 62.54716 * 7 5 4 32 32 H 1.08995 * 109.47029 * 302.55343 * 7 5 4 33 33 H 0.96999 * 120.00111 * 359.97438 * 8 7 5 34 34 H 1.08003 * 119.80061 * 359.97438 * 10 9 8 35 35 H 1.08006 * 120.06505 * 180.25528 * 13 11 10 36 36 H 0.96998 * 120.00422 * 353.05954 * 18 17 15 37 37 H 1.07997 * 120.13971 * 359.97438 * 23 9 8 38 38 H 1.09007 * 110.66976 * 155.76381 * 24 5 4 39 39 H 1.09006 * 110.66764 * 278.88704 * 24 5 4 40 40 H 1.00901 * 110.99923 * 24.25932 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0546 -0.7480 -1.2397 5 6 2.9100 -1.9076 -0.6797 6 1 2.3291 -2.8287 -0.6350 7 6 4.1715 -2.1059 -1.5225 8 7 4.9297 -3.2477 -1.0054 9 6 6.1280 -3.6246 -1.6163 10 6 6.6005 -2.9142 -2.7174 11 6 7.7895 -3.2798 -3.3310 12 9 8.2378 -2.5829 -4.3979 13 6 8.5182 -4.3489 -2.8534 14 6 8.0486 -5.0780 -1.7454 15 6 8.7879 -6.1784 -1.2530 16 1 8.2815 -6.9839 -0.7420 17 6 10.1755 -6.2236 -1.4280 18 7 10.8036 -7.3703 -1.3814 19 14 11.1299 -4.6477 -1.7357 20 1 11.3450 -4.4761 -3.1949 21 1 10.3600 -3.4919 -1.2096 22 1 12.4435 -4.7220 -1.0471 23 6 6.8430 -4.7024 -1.1268 24 6 3.2735 -1.4189 0.7449 25 7 2.0378 -0.7199 1.1881 26 1 -0.3634 -1.0275 0.0198 27 1 -0.3633 0.5309 0.8800 28 1 -0.3633 0.4966 -0.8996 29 1 2.6684 -0.0853 -1.8496 30 1 1.2238 -1.1399 -1.8266 31 1 4.7871 -1.2078 -1.4717 32 1 3.8903 -2.2955 -2.5583 33 1 4.6001 -3.7415 -0.2384 34 1 6.0376 -2.0736 -3.0956 35 1 9.4457 -4.6282 -3.3312 36 1 10.3258 -8.1751 -1.1266 37 1 6.4771 -5.2531 -0.2729 38 1 3.4958 -2.2641 1.3965 39 1 4.1145 -0.7263 0.7111 40 1 1.3554 -1.3797 1.5301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162558675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = -43.109141 kcal Electronic energy + Delta-G solvation = -21038.980400 eV Core-core repulsion = 17766.439584 eV Total energy + Delta-G solvation = -3272.540816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.88503 -39.45959 -37.96075 -35.36094 -33.46598 -31.72000 -30.73259 -29.82606 -28.16646 -25.75989 -25.22177 -24.17274 -21.44086 -21.33060 -20.38538 -19.90997 -18.32800 -16.55098 -16.37550 -15.81006 -15.25612 -15.16587 -14.86997 -14.59352 -14.32365 -14.23941 -13.91917 -13.66375 -13.23087 -13.17066 -12.77646 -12.49919 -12.25890 -11.97689 -11.73186 -11.60794 -11.26492 -11.21483 -11.03016 -10.87777 -10.76407 -10.56239 -10.38499 -9.91066 -9.61446 -9.24980 -8.86891 -8.76063 -7.75180 -7.28872 -6.62759 -4.65003 2.52171 2.74479 3.24938 3.37280 3.58497 3.81459 3.98144 4.02878 4.43996 4.46973 4.54282 4.72596 4.82371 5.05936 5.08696 5.25531 5.32908 5.35617 5.44441 5.51860 5.58126 5.67502 5.75895 5.82181 5.84819 5.93821 6.11231 6.14742 6.36559 6.43957 6.51486 6.69404 6.98360 7.09982 7.24089 7.40032 7.52261 7.63753 7.69200 8.10806 8.28772 8.38116 8.58553 8.72388 9.95452 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029573 B = 0.003659 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.574712 B = 7651.289053 C = 8160.922046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.067 3.933 3 H 0.085 0.915 4 C -0.141 4.141 5 C -0.134 4.134 6 H 0.078 0.922 7 C 0.145 3.855 8 N -0.756 5.756 9 C 0.261 3.739 10 C -0.340 4.340 11 C 0.164 3.836 12 F -0.162 7.162 13 C -0.309 4.309 14 C 0.148 3.852 15 C -0.511 4.511 16 H 0.079 0.921 17 C 0.047 3.953 18 N -0.809 5.809 19 Si 1.071 2.929 20 H -0.276 1.276 21 H -0.260 1.260 22 H -0.289 1.289 23 C -0.293 4.293 24 C 0.048 3.952 25 N -0.672 5.672 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.392 0.608 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.287 0.713 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.531 10.742 2.595 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.043 4.043 3 H 0.103 0.897 4 C -0.181 4.181 5 C -0.155 4.155 6 H 0.096 0.904 7 C 0.019 3.981 8 N -0.388 5.388 9 C 0.161 3.839 10 C -0.363 4.363 11 C 0.144 3.856 12 F -0.141 7.141 13 C -0.330 4.330 14 C 0.143 3.857 15 C -0.539 4.539 16 H 0.097 0.903 17 C -0.174 4.174 18 N -0.431 5.431 19 Si 0.896 3.104 20 H -0.203 1.203 21 H -0.184 1.184 22 H -0.217 1.217 23 C -0.317 4.317 24 C -0.081 4.081 25 N -0.299 5.299 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.226 0.774 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.745 11.982 2.471 18.401 hybrid contribution -2.008 -1.671 -0.239 2.623 sum -15.752 10.312 2.232 18.959 Atomic orbital electron populations 1.22068 0.94854 1.01990 1.02432 1.22360 0.94496 0.99026 0.88377 0.89741 1.22870 0.99570 0.97114 0.98530 1.22935 0.96665 0.98835 0.97040 0.90365 1.21080 0.90584 0.89799 0.96588 1.44430 1.23479 1.34768 1.36148 1.17173 0.84391 0.92164 0.90206 1.19692 1.01787 1.09218 1.05602 1.17222 0.93499 0.90925 0.83919 1.91352 1.89367 1.78609 1.54800 1.20857 1.04609 1.03195 1.04365 1.17163 0.90785 0.89556 0.88150 1.20607 0.94026 1.05000 1.34297 0.90324 1.27316 0.96153 1.03229 0.90702 1.70532 1.42918 0.99969 1.29710 0.83605 0.74895 0.74091 0.77776 1.20254 1.18418 1.21655 1.20416 1.01998 1.03066 1.06218 1.23233 0.93800 0.97801 0.93259 1.62955 1.07303 1.29749 1.29908 0.92669 0.91975 0.91831 0.90753 0.91108 0.92649 0.92963 0.77437 0.87826 0.87157 0.90125 0.88272 0.90587 0.89748 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.96 37.16 0.33 -0.70 16 2 C 0.07 0.57 4.02 -66.64 -0.27 0.30 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.14 -1.23 6.15 -25.37 -0.16 -1.39 16 5 C -0.13 -1.35 3.09 -88.76 -0.27 -1.62 16 6 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 7 C 0.15 1.90 4.22 -4.04 -0.02 1.88 16 8 N -0.76 -12.00 5.61 -58.70 -0.33 -12.33 16 9 C 0.26 5.41 6.64 -83.87 -0.56 4.86 16 10 C -0.34 -7.34 9.30 -39.02 -0.36 -7.70 16 11 C 0.16 3.87 7.28 -39.53 -0.29 3.59 16 12 F -0.16 -3.66 17.26 2.25 0.04 -3.62 16 13 C -0.31 -7.81 7.24 -38.77 -0.28 -8.09 16 14 C 0.15 3.78 5.13 -106.86 -0.55 3.23 16 15 C -0.51 -13.68 9.41 -37.74 -0.36 -14.04 16 16 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 17 C 0.05 1.23 5.36 -17.35 -0.09 1.14 16 18 N -0.81 -21.66 13.65 55.55 0.76 -20.90 16 19 Si 1.07 24.85 24.94 -169.99 -4.24 20.61 16 20 H -0.28 -6.25 6.71 56.52 0.38 -5.87 16 21 H -0.26 -6.04 6.93 56.52 0.39 -5.65 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.29 -6.76 9.63 -38.67 -0.37 -7.14 16 24 C 0.05 0.49 6.82 -1.79 -0.01 0.48 16 25 N -0.67 -6.29 7.40 -102.98 -0.76 -7.05 16 26 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 30 H 0.07 0.57 7.69 -51.93 -0.40 0.17 16 31 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 32 H 0.05 0.72 7.94 -51.93 -0.41 0.30 16 33 H 0.39 5.57 8.41 -40.82 -0.34 5.22 16 34 H 0.10 2.02 6.70 -52.48 -0.35 1.67 16 35 H 0.11 2.80 4.70 -52.48 -0.25 2.55 16 36 H 0.29 7.42 8.73 -40.82 -0.36 7.07 16 37 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 38 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.08 0.97 7.98 -51.93 -0.41 0.56 16 40 H 0.33 2.73 8.39 -39.29 -0.33 2.40 16 LS Contribution 324.04 15.07 4.88 4.88 Total: -1.00 -27.46 324.04 -8.78 -36.24 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.88 Total: 7.37 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -3.25 Total: -25.21 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.33 Total: -40.28 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -4.24 Total: 20.61 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.46 -8.78 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162558675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.865 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds