Wall clock time and date at job start Wed Apr 15 2020 11:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.91280 * 2 1 4 4 C 1.53998 * 109.91576 * 238.89505 * 2 1 3 5 5 C 1.54596 * 105.14209 * 239.22551 * 4 2 1 6 6 H 1.08997 * 110.72424 * 96.58031 * 5 4 2 7 7 C 1.53000 * 110.72709 * 219.68471 * 5 4 2 8 8 N 1.46495 * 109.47280 * 182.54994 * 7 5 4 9 9 C 1.39685 * 119.99907 * 180.02562 * 8 7 5 10 10 C 1.39293 * 119.93651 * 359.97438 * 9 8 7 11 11 C 1.38703 * 120.39542 * 179.97438 * 10 9 8 12 12 F 1.35095 * 119.85786 * 180.02562 * 11 10 9 13 13 C 1.37916 * 120.27307 * 359.78469 * 11 10 9 14 14 C 1.40702 * 119.86918 * 0.48689 * 13 11 10 15 15 C 1.41414 * 120.19515 * 179.76573 * 14 13 11 16 16 H 1.07999 * 120.00214 * 207.47165 * 15 14 13 17 17 C 1.39931 * 119.99699 * 27.47321 * 15 14 13 18 18 N 1.30827 * 119.99729 * 201.99522 * 17 15 14 19 19 Si 1.86797 * 120.00191 * 21.71921 * 17 15 14 20 20 H 1.48493 * 109.47366 * 263.24120 * 19 17 15 21 21 H 1.48504 * 109.46999 * 23.24249 * 19 17 15 22 22 H 1.48502 * 109.47268 * 143.23779 * 19 17 15 23 23 C 1.38288 * 119.93597 * 179.97438 * 9 8 7 24 24 C 1.54934 * 103.08065 * 338.13571 * 5 4 2 25 25 N 1.47907 * 110.08202 * 121.21294 * 2 1 3 26 26 H 1.09006 * 109.47122 * 181.10522 * 1 2 3 27 27 H 1.09006 * 109.47040 * 301.10108 * 1 2 3 28 28 H 1.08994 * 109.47195 * 61.10034 * 1 2 3 29 29 H 1.08998 * 110.30479 * 120.30970 * 4 2 1 30 30 H 1.09004 * 110.39155 * 358.18607 * 4 2 1 31 31 H 1.09002 * 109.46451 * 62.54716 * 7 5 4 32 32 H 1.08995 * 109.47029 * 302.55343 * 7 5 4 33 33 H 0.96999 * 120.00111 * 359.97438 * 8 7 5 34 34 H 1.08003 * 119.80061 * 359.97438 * 10 9 8 35 35 H 1.08006 * 120.06505 * 180.25528 * 13 11 10 36 36 H 0.96998 * 120.00422 * 353.05954 * 18 17 15 37 37 H 1.07997 * 120.13971 * 359.97438 * 23 9 8 38 38 H 1.09007 * 110.66976 * 155.76381 * 24 5 4 39 39 H 1.09006 * 110.66764 * 278.88704 * 24 5 4 40 40 H 1.00901 * 110.99923 * 24.25932 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0546 -0.7480 -1.2397 5 6 2.9100 -1.9076 -0.6797 6 1 2.3291 -2.8287 -0.6350 7 6 4.1715 -2.1059 -1.5225 8 7 4.9297 -3.2477 -1.0054 9 6 6.1280 -3.6246 -1.6163 10 6 6.6005 -2.9142 -2.7174 11 6 7.7895 -3.2798 -3.3310 12 9 8.2378 -2.5829 -4.3979 13 6 8.5182 -4.3489 -2.8534 14 6 8.0486 -5.0780 -1.7454 15 6 8.7879 -6.1784 -1.2530 16 1 8.2815 -6.9839 -0.7420 17 6 10.1755 -6.2236 -1.4280 18 7 10.8036 -7.3703 -1.3814 19 14 11.1299 -4.6477 -1.7357 20 1 11.3450 -4.4761 -3.1949 21 1 10.3600 -3.4919 -1.2096 22 1 12.4435 -4.7220 -1.0471 23 6 6.8430 -4.7024 -1.1268 24 6 3.2735 -1.4189 0.7449 25 7 2.0378 -0.7199 1.1881 26 1 -0.3634 -1.0275 0.0198 27 1 -0.3633 0.5309 0.8800 28 1 -0.3633 0.4966 -0.8996 29 1 2.6684 -0.0853 -1.8496 30 1 1.2238 -1.1399 -1.8266 31 1 4.7871 -1.2078 -1.4717 32 1 3.8903 -2.2955 -2.5583 33 1 4.6001 -3.7415 -0.2384 34 1 6.0376 -2.0736 -3.0956 35 1 9.4457 -4.6282 -3.3312 36 1 10.3258 -8.1751 -1.1266 37 1 6.4771 -5.2531 -0.2729 38 1 3.4958 -2.2641 1.3965 39 1 4.1145 -0.7263 0.7111 40 1 1.3554 -1.3797 1.5301 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162558675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:24 Heat of formation + Delta-G solvation = -60.569995 kcal Electronic energy + Delta-G solvation = -21039.737560 eV Core-core repulsion = 17766.439584 eV Total energy + Delta-G solvation = -3273.297975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.70713 -40.38500 -39.55105 -36.87509 -35.22488 -32.82266 -31.68079 -31.50746 -29.60073 -27.09097 -26.56733 -25.30875 -23.08224 -22.50368 -21.80223 -20.85620 -20.18343 -18.21610 -17.56381 -17.13307 -16.80430 -16.43584 -16.21559 -15.99170 -15.95363 -15.52806 -15.18259 -15.02385 -14.85515 -14.21938 -14.14756 -13.61715 -13.51557 -13.24030 -12.94142 -12.87627 -12.57959 -12.43102 -12.36149 -12.17090 -11.95248 -11.73456 -11.66713 -11.52362 -11.48307 -11.06274 -10.53217 -9.66914 -9.57768 -9.27314 -8.24184 -6.67655 0.64970 0.88972 1.37791 1.52436 1.75570 2.15974 2.54621 2.54858 3.20623 3.40030 3.65690 3.67539 3.81558 3.95307 4.10910 4.32711 4.37335 4.42347 4.48344 4.52315 4.61337 4.63756 4.72958 4.75869 4.87470 4.90149 4.97409 5.05313 5.19800 5.23635 5.26898 5.35076 5.42442 5.48691 5.62097 5.73360 5.81429 5.84485 6.29642 6.41634 6.45290 6.70102 6.75285 6.98491 7.94677 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029573 B = 0.003659 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.574712 B = 7651.289053 C = 8160.922046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 H 0.078 0.922 4 C -0.137 4.137 5 C -0.123 4.123 6 H 0.085 0.915 7 C 0.142 3.858 8 N -0.741 5.741 9 C 0.274 3.726 10 C -0.327 4.327 11 C 0.157 3.843 12 F -0.156 7.156 13 C -0.332 4.332 14 C 0.134 3.866 15 C -0.542 4.542 16 H 0.058 0.942 17 C 0.019 3.981 18 N -0.834 5.834 19 Si 1.099 2.901 20 H -0.270 1.270 21 H -0.262 1.262 22 H -0.274 1.274 23 C -0.304 4.304 24 C 0.049 3.951 25 N -0.679 5.679 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.403 0.597 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.282 0.718 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.747 12.854 2.445 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.043 4.043 3 H 0.096 0.904 4 C -0.177 4.177 5 C -0.144 4.144 6 H 0.103 0.897 7 C 0.018 3.982 8 N -0.372 5.372 9 C 0.170 3.830 10 C -0.351 4.351 11 C 0.138 3.862 12 F -0.135 7.135 13 C -0.353 4.353 14 C 0.130 3.870 15 C -0.571 4.571 16 H 0.076 0.924 17 C -0.196 4.196 18 N -0.457 5.457 19 Si 0.921 3.079 20 H -0.196 1.196 21 H -0.187 1.187 22 H -0.200 1.200 23 C -0.328 4.328 24 C -0.080 4.080 25 N -0.307 5.307 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.238 0.762 34 H 0.149 0.851 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.011 14.099 2.343 21.462 hybrid contribution -1.574 -2.172 -0.193 2.689 sum -17.585 11.927 2.149 21.357 Atomic orbital electron populations 1.22025 0.93420 1.02455 1.02939 1.22374 0.95657 0.98468 0.87800 0.90395 1.22862 0.99644 0.96488 0.98695 1.22835 0.95385 0.99735 0.96417 0.89663 1.21266 0.91436 0.88325 0.97218 1.44522 1.21775 1.35148 1.35723 1.17171 0.85430 0.90816 0.89622 1.20026 1.00848 1.09301 1.04913 1.17347 0.93972 0.90707 0.84215 1.91363 1.89404 1.78292 1.54435 1.20873 1.05091 1.04397 1.04936 1.17301 0.91736 0.89470 0.88459 1.20587 0.94644 1.05657 1.36194 0.92390 1.28148 0.96728 1.04609 0.90165 1.70583 1.42972 1.00158 1.32005 0.83243 0.74739 0.71766 0.78189 1.19586 1.18666 1.20013 1.20556 1.01657 1.04014 1.06591 1.23161 0.93836 0.97577 0.93459 1.62916 1.07359 1.29975 1.30477 0.92176 0.91937 0.90933 0.90831 0.89961 0.92768 0.92754 0.76201 0.85138 0.87956 0.90691 0.87582 0.90367 0.91200 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.96 71.98 0.64 -0.92 16 2 C 0.07 0.94 4.02 45.06 0.18 1.12 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.14 -1.95 6.15 31.47 0.19 -1.76 16 5 C -0.12 -2.07 3.09 -9.59 -0.03 -2.10 16 6 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 7 C 0.14 3.23 4.22 86.38 0.36 3.59 16 8 N -0.74 -21.25 5.61 -339.62 -1.90 -23.15 16 9 C 0.27 10.67 6.64 38.16 0.25 10.93 16 10 C -0.33 -13.21 9.30 22.64 0.21 -13.00 16 11 C 0.16 7.16 7.28 22.30 0.16 7.33 16 12 F -0.16 -6.72 17.26 44.97 0.78 -5.95 16 13 C -0.33 -16.67 7.24 22.80 0.17 -16.51 16 14 C 0.13 6.92 5.13 -21.31 -0.11 6.81 16 15 C -0.54 -29.99 9.41 23.46 0.22 -29.77 16 16 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 17 C 0.02 1.05 5.36 85.25 0.46 1.50 16 18 N -0.83 -46.05 13.65 21.82 0.30 -45.76 16 19 Si 1.10 50.64 24.94 68.60 1.71 52.35 16 20 H -0.27 -12.03 6.71 99.48 0.67 -11.36 16 21 H -0.26 -12.03 6.93 99.48 0.69 -11.34 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.30 -13.78 9.63 22.86 0.22 -13.56 16 24 C 0.05 0.88 6.82 86.61 0.59 1.47 16 25 N -0.68 -11.04 7.40 -479.72 -3.55 -14.59 16 26 H 0.06 0.58 8.12 -2.38 -0.02 0.56 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 1.08 7.85 -2.39 -0.02 1.06 16 30 H 0.08 1.01 7.69 -2.38 -0.02 1.00 16 31 H 0.05 1.30 7.85 -2.39 -0.02 1.28 16 32 H 0.05 1.27 7.94 -2.39 -0.02 1.25 16 33 H 0.40 10.21 8.41 -92.71 -0.78 9.43 16 34 H 0.13 4.56 6.70 -2.91 -0.02 4.54 16 35 H 0.10 5.23 4.70 -2.91 -0.01 5.22 16 36 H 0.28 15.26 8.73 -92.71 -0.81 14.45 16 37 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.07 1.46 7.98 -2.38 -0.02 1.44 16 40 H 0.34 4.68 8.39 -89.69 -0.75 3.93 16 Total: -1.00 -58.87 324.04 0.28 -58.58 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.57 Total: 23.38 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 3.52 Total: -44.87 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -5.16 Total: -83.50 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.78 Total: -5.95 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 1.71 Total: 52.35 kcal Total: -58.87 0.28 -58.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162558675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.989 kcal (2) G-P(sol) polarization free energy of solvation -58.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds