Wall clock time and date at job start Wed Apr 15 2020 11:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.90819 * 2 1 4 4 C 1.53999 * 109.91738 * 238.89564 * 2 1 3 5 5 C 1.55024 * 104.93113 * 239.48019 * 4 2 1 6 6 H 1.09002 * 110.97095 * 96.36765 * 5 4 2 7 7 C 1.53001 * 110.62502 * 219.57414 * 5 4 2 8 8 N 1.46500 * 109.46805 * 179.90507 * 7 5 4 9 9 C 1.38808 * 120.00007 * 180.02562 * 8 7 5 10 10 C 1.38633 * 120.21573 * 0.02562 * 9 8 7 11 11 C 1.38224 * 120.21644 * 179.97438 * 10 9 8 12 12 C 1.38783 * 120.66325 * 0.02562 * 11 10 9 13 13 C 1.37739 * 120.43348 * 359.95548 * 12 11 10 14 14 F 1.35094 * 120.12142 * 180.02562 * 13 12 11 15 15 C 1.40999 * 119.76118 * 359.78603 * 13 12 11 16 16 C 1.40990 * 120.32163 * 180.25901 * 15 13 12 17 17 H 1.07999 * 119.99850 * 216.79024 * 16 15 13 18 18 C 1.39905 * 120.00197 * 36.78718 * 16 15 13 19 19 N 1.30913 * 119.99870 * 19.59045 * 18 16 15 20 20 Si 1.86801 * 120.00139 * 199.59057 * 18 16 15 21 21 H 1.48497 * 109.47183 * 60.00319 * 20 18 16 22 22 H 1.48506 * 109.46890 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46994 * 299.99790 * 20 18 16 24 24 C 1.54932 * 102.92295 * 337.88865 * 5 4 2 25 25 N 1.47904 * 109.91542 * 121.10294 * 2 1 3 26 26 H 1.08999 * 109.47455 * 300.70087 * 1 2 3 27 27 H 1.08999 * 109.47117 * 180.70191 * 1 2 3 28 28 H 1.08995 * 109.47320 * 60.70323 * 1 2 3 29 29 H 1.08998 * 110.30654 * 358.33924 * 4 2 1 30 30 H 1.08994 * 110.30517 * 120.50238 * 4 2 1 31 31 H 1.08997 * 109.47504 * 299.90438 * 7 5 4 32 32 H 1.09001 * 109.47078 * 59.90952 * 7 5 4 33 33 H 0.97000 * 120.00277 * 359.97438 * 8 7 5 34 34 H 1.07995 * 119.89266 * 359.94973 * 10 9 8 35 35 H 1.08002 * 119.66834 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.78561 * 179.97438 * 12 11 10 37 37 H 0.97001 * 120.00047 * 180.02562 * 19 18 16 38 38 H 1.08998 * 110.67252 * 279.08857 * 24 5 4 39 39 H 1.09006 * 110.66311 * 155.96122 * 24 5 4 40 40 H 1.00895 * 110.99929 * 265.19050 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7480 -1.2397 5 6 2.9059 -1.9129 -0.6728 6 1 2.3241 -2.8334 -0.6240 7 6 4.1682 -2.1166 -1.5130 8 7 4.9536 -3.2200 -0.9546 9 6 6.1501 -3.5921 -1.5519 10 6 6.6063 -2.9223 -2.6767 11 6 7.7980 -3.2924 -3.2711 12 6 8.5528 -4.3359 -2.7540 13 6 8.1253 -5.0196 -1.6373 14 9 8.8653 -6.0341 -1.1389 15 6 6.9151 -4.6537 -1.0132 16 6 6.4691 -5.3419 0.1336 17 1 5.4149 -5.5286 0.2754 18 6 7.3922 -5.7831 1.0879 19 7 8.5875 -5.2516 1.1369 20 14 6.9190 -7.1305 2.2921 21 1 6.5622 -8.3616 1.5422 22 1 8.0653 -7.4146 3.1924 23 1 5.7537 -6.6868 3.0985 24 6 3.2681 -1.4171 0.7497 25 7 2.0338 -0.7183 1.1907 26 1 -0.3634 0.5247 0.8836 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5028 -0.8962 29 1 1.2228 -1.1369 -1.8270 30 1 2.6713 -0.0862 -1.8478 31 1 3.8874 -2.3535 -2.5392 32 1 4.7640 -1.2039 -1.5007 33 1 4.6380 -3.6901 -0.1670 34 1 6.0285 -2.1089 -3.0900 35 1 8.1449 -2.7648 -4.1474 36 1 9.4816 -4.6135 -3.2301 37 1 9.2277 -5.5577 1.7983 38 1 4.1097 -0.7254 0.7133 39 1 3.4888 -2.2590 1.4059 40 1 2.2312 -0.0764 1.9436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162558926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:28 Heat of formation + Delta-G solvation = -27.078739 kcal Electronic energy + Delta-G solvation = -21605.760434 eV Core-core repulsion = 18333.914748 eV Total energy + Delta-G solvation = -3271.845685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.80745 -39.09620 -37.67695 -34.58547 -33.47097 -31.45414 -30.78541 -29.51480 -27.71764 -25.71081 -24.96099 -24.28657 -21.17939 -20.62976 -19.96819 -19.84114 -17.31129 -16.80933 -16.16334 -15.71071 -15.14355 -14.72062 -14.34226 -14.13462 -13.80569 -13.69005 -13.49471 -13.31227 -13.27843 -12.64705 -12.52106 -12.00332 -11.83179 -11.71996 -11.55280 -11.26773 -11.21074 -11.14673 -10.85400 -10.82676 -10.65713 -10.56763 -10.45859 -10.02724 -9.46698 -8.95216 -8.84403 -8.60407 -7.10493 -6.68106 -6.33592 -4.18624 2.80935 2.95897 3.15710 3.16844 3.23943 4.06141 4.10545 4.31746 4.57250 4.73384 4.78804 4.99653 5.10357 5.28682 5.39378 5.48783 5.52029 5.68265 5.71583 5.77440 5.84849 5.88811 6.05586 6.09498 6.12574 6.16159 6.20687 6.35264 6.46290 6.55939 6.76851 7.03081 7.25338 7.26601 7.39619 7.40997 7.66774 7.87716 8.13231 8.39254 8.58186 8.77641 8.96097 9.05180 10.37017 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.005101 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.282432 B = 5488.111051 C = 6805.414770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.120 4.120 5 C -0.100 4.100 6 H 0.086 0.914 7 C 0.145 3.855 8 N -0.743 5.743 9 C 0.150 3.850 10 C -0.194 4.194 11 C -0.162 4.162 12 C -0.182 4.182 13 C 0.061 3.939 14 F -0.143 7.143 15 C 0.041 3.959 16 C -0.477 4.477 17 H 0.075 0.925 18 C 0.082 3.918 19 N -0.788 5.788 20 Si 0.903 3.097 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.269 1.269 24 C 0.045 3.955 25 N -0.671 5.671 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.398 0.602 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.279 0.721 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 8.415 -1.552 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 H 0.064 0.936 4 C -0.158 4.158 5 C -0.119 4.119 6 H 0.105 0.895 7 C 0.019 3.981 8 N -0.377 5.377 9 C 0.049 3.951 10 C -0.218 4.218 11 C -0.182 4.182 12 C -0.202 4.202 13 C 0.039 3.961 14 F -0.122 7.122 15 C 0.035 3.965 16 C -0.508 4.508 17 H 0.093 0.907 18 C -0.137 4.137 19 N -0.413 5.413 20 Si 0.728 3.272 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.084 4.084 25 N -0.300 5.300 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.234 0.766 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.953 7.958 -1.525 13.625 hybrid contribution 0.703 -0.090 0.920 1.161 sum -10.250 7.868 -0.605 12.936 Atomic orbital electron populations 1.21761 0.94286 1.02320 1.00931 1.22176 0.96019 0.95756 0.90632 0.93608 1.22537 0.99522 0.96873 0.96893 1.22342 0.96153 0.98910 0.94515 0.89547 1.21069 0.90297 0.90629 0.96124 1.43974 1.22189 1.37717 1.33826 1.17646 0.88566 0.94515 0.94351 1.20052 0.99206 1.03527 0.98975 1.19929 0.96568 1.00223 1.01509 1.20422 1.00818 1.00173 0.98804 1.17454 0.93908 0.90535 0.94223 1.91311 1.75943 1.57536 1.87403 1.17071 0.91910 0.92945 0.94530 1.18852 0.94452 1.33874 1.03588 0.90696 1.25646 0.94335 0.95869 0.97824 1.69790 1.05589 1.34950 1.30923 0.86458 0.78690 0.82212 0.79850 1.19064 1.20581 1.19380 1.23069 0.90725 0.98573 0.96027 1.63015 1.28833 1.30453 1.07706 0.92955 0.91954 0.92686 0.90749 0.91191 0.93289 0.93588 0.76611 0.88843 0.88647 0.88565 0.90994 0.93632 0.89648 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.32 37.16 0.35 -0.87 16 2 C 0.06 0.65 3.89 -66.64 -0.26 0.39 16 3 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -1.27 6.17 -25.14 -0.16 -1.42 16 5 C -0.10 -1.28 3.14 -88.53 -0.28 -1.56 16 6 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 7 C 0.14 2.20 4.22 -4.04 -0.02 2.19 16 8 N -0.74 -14.41 5.48 -58.22 -0.32 -14.73 16 9 C 0.15 3.48 6.68 -83.31 -0.56 2.92 16 10 C -0.19 -4.21 9.29 -39.44 -0.37 -4.58 16 11 C -0.16 -3.56 10.03 -39.38 -0.40 -3.95 16 12 C -0.18 -4.35 9.99 -39.56 -0.40 -4.75 16 13 C 0.06 1.63 6.68 -38.72 -0.26 1.38 16 14 F -0.14 -4.02 14.27 2.25 0.03 -3.99 16 15 C 0.04 1.08 5.41 -106.56 -0.58 0.50 16 16 C -0.48 -12.55 8.13 -37.92 -0.31 -12.86 16 17 H 0.08 1.86 7.14 -52.49 -0.37 1.49 16 18 C 0.08 2.13 4.52 -17.32 -0.08 2.05 16 19 N -0.79 -21.52 11.11 55.55 0.62 -20.90 16 20 Si 0.90 19.63 29.60 -169.99 -5.03 14.60 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C 0.04 0.59 6.68 -1.90 -0.01 0.57 16 25 N -0.67 -7.73 7.14 -103.13 -0.74 -8.46 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 30 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 31 H 0.05 0.74 7.94 -51.93 -0.41 0.32 16 32 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 33 H 0.40 7.80 6.76 -40.82 -0.28 7.53 16 34 H 0.09 1.78 6.71 -52.49 -0.35 1.43 16 35 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.28 7.11 8.30 -40.82 -0.34 6.77 16 38 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.34 3.39 8.92 -39.29 -0.35 3.04 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -28.54 325.26 -9.76 -38.30 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.92 Total: 10.26 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -3.31 Total: -19.98 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.44 Total: -44.09 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.03 Total: -3.99 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.54 -9.76 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162558926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.220 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds