Wall clock time and date at job start Wed Apr 15 2020 11:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.90819 * 2 1 4 4 C 1.53999 * 109.91738 * 238.89564 * 2 1 3 5 5 C 1.55024 * 104.93113 * 239.48019 * 4 2 1 6 6 H 1.09002 * 110.97095 * 96.36765 * 5 4 2 7 7 C 1.53001 * 110.62502 * 219.57414 * 5 4 2 8 8 N 1.46500 * 109.46805 * 179.90507 * 7 5 4 9 9 C 1.38808 * 120.00007 * 180.02562 * 8 7 5 10 10 C 1.38633 * 120.21573 * 0.02562 * 9 8 7 11 11 C 1.38224 * 120.21644 * 179.97438 * 10 9 8 12 12 C 1.38783 * 120.66325 * 0.02562 * 11 10 9 13 13 C 1.37739 * 120.43348 * 359.95548 * 12 11 10 14 14 F 1.35094 * 120.12142 * 180.02562 * 13 12 11 15 15 C 1.40999 * 119.76118 * 359.78603 * 13 12 11 16 16 C 1.40990 * 120.32163 * 180.25901 * 15 13 12 17 17 H 1.07999 * 119.99850 * 216.79024 * 16 15 13 18 18 C 1.39905 * 120.00197 * 36.78718 * 16 15 13 19 19 N 1.30913 * 119.99870 * 19.59045 * 18 16 15 20 20 Si 1.86801 * 120.00139 * 199.59057 * 18 16 15 21 21 H 1.48497 * 109.47183 * 60.00319 * 20 18 16 22 22 H 1.48506 * 109.46890 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46994 * 299.99790 * 20 18 16 24 24 C 1.54932 * 102.92295 * 337.88865 * 5 4 2 25 25 N 1.47904 * 109.91542 * 121.10294 * 2 1 3 26 26 H 1.08999 * 109.47455 * 300.70087 * 1 2 3 27 27 H 1.08999 * 109.47117 * 180.70191 * 1 2 3 28 28 H 1.08995 * 109.47320 * 60.70323 * 1 2 3 29 29 H 1.08998 * 110.30654 * 358.33924 * 4 2 1 30 30 H 1.08994 * 110.30517 * 120.50238 * 4 2 1 31 31 H 1.08997 * 109.47504 * 299.90438 * 7 5 4 32 32 H 1.09001 * 109.47078 * 59.90952 * 7 5 4 33 33 H 0.97000 * 120.00277 * 359.97438 * 8 7 5 34 34 H 1.07995 * 119.89266 * 359.94973 * 10 9 8 35 35 H 1.08002 * 119.66834 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.78561 * 179.97438 * 12 11 10 37 37 H 0.97001 * 120.00047 * 180.02562 * 19 18 16 38 38 H 1.08998 * 110.67252 * 279.08857 * 24 5 4 39 39 H 1.09006 * 110.66311 * 155.96122 * 24 5 4 40 40 H 1.00895 * 110.99929 * 265.19050 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0546 -0.7480 -1.2397 5 6 2.9059 -1.9129 -0.6728 6 1 2.3241 -2.8334 -0.6240 7 6 4.1682 -2.1166 -1.5130 8 7 4.9536 -3.2200 -0.9546 9 6 6.1501 -3.5921 -1.5519 10 6 6.6063 -2.9223 -2.6767 11 6 7.7980 -3.2924 -3.2711 12 6 8.5528 -4.3359 -2.7540 13 6 8.1253 -5.0196 -1.6373 14 9 8.8653 -6.0341 -1.1389 15 6 6.9151 -4.6537 -1.0132 16 6 6.4691 -5.3419 0.1336 17 1 5.4149 -5.5286 0.2754 18 6 7.3922 -5.7831 1.0879 19 7 8.5875 -5.2516 1.1369 20 14 6.9190 -7.1305 2.2921 21 1 6.5622 -8.3616 1.5422 22 1 8.0653 -7.4146 3.1924 23 1 5.7537 -6.6868 3.0985 24 6 3.2681 -1.4171 0.7497 25 7 2.0338 -0.7183 1.1907 26 1 -0.3634 0.5247 0.8836 27 1 -0.3633 -1.0276 0.0126 28 1 -0.3634 0.5028 -0.8962 29 1 1.2228 -1.1369 -1.8270 30 1 2.6713 -0.0862 -1.8478 31 1 3.8874 -2.3535 -2.5392 32 1 4.7640 -1.2039 -1.5007 33 1 4.6380 -3.6901 -0.1670 34 1 6.0285 -2.1089 -3.0900 35 1 8.1449 -2.7648 -4.1474 36 1 9.4816 -4.6135 -3.2301 37 1 9.2277 -5.5577 1.7983 38 1 4.1097 -0.7254 0.7133 39 1 3.4888 -2.2590 1.4059 40 1 2.2312 -0.0764 1.9436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162558926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:27 Heat of formation + Delta-G solvation = -44.454397 kcal Electronic energy + Delta-G solvation = -21606.513899 eV Core-core repulsion = 18333.914748 eV Total energy + Delta-G solvation = -3272.599150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.86193 -40.20485 -39.27573 -36.04762 -35.36890 -32.69337 -31.76122 -31.26567 -29.31384 -27.12669 -26.37907 -25.56863 -22.90286 -22.06088 -21.28053 -20.88988 -19.21768 -18.23986 -17.60252 -17.03569 -16.72717 -16.32760 -15.91078 -15.64509 -15.54748 -15.19873 -15.07949 -14.62317 -14.41728 -14.14735 -13.52392 -13.48618 -13.13674 -13.06082 -13.04312 -12.79812 -12.71906 -12.54677 -12.33333 -12.28056 -12.01764 -11.71231 -11.60609 -11.50170 -11.30153 -10.84332 -10.52342 -9.50816 -9.02877 -8.58759 -8.07287 -6.14154 0.97286 1.10221 1.37231 1.46646 1.49727 2.25239 2.80057 2.91001 3.23125 3.59439 3.68043 3.80372 3.99726 4.18031 4.28958 4.38007 4.43688 4.46149 4.60209 4.67254 4.68794 4.80493 4.82166 4.89972 4.90949 4.99880 5.08801 5.15067 5.21656 5.29648 5.35752 5.42768 5.58898 5.67236 5.81197 5.87060 6.04223 6.25281 6.42130 6.52858 6.78061 6.95191 7.16588 7.23545 8.47603 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017614 B = 0.005101 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.282432 B = 5488.111051 C = 6805.414770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.061 3.939 3 H 0.057 0.943 4 C -0.114 4.114 5 C -0.094 4.094 6 H 0.078 0.922 7 C 0.145 3.855 8 N -0.740 5.740 9 C 0.153 3.847 10 C -0.200 4.200 11 C -0.144 4.144 12 C -0.201 4.201 13 C 0.024 3.976 14 F -0.161 7.161 15 C 0.001 3.999 16 C -0.501 4.501 17 H 0.077 0.923 18 C 0.039 3.961 19 N -0.830 5.830 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.255 1.255 24 C 0.047 3.953 25 N -0.677 5.677 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.395 0.605 34 H 0.127 0.873 35 H 0.134 0.866 36 H 0.110 0.890 37 H 0.280 0.720 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 10.049 -2.496 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.048 4.048 3 H 0.075 0.925 4 C -0.153 4.153 5 C -0.113 4.113 6 H 0.097 0.903 7 C 0.021 3.979 8 N -0.372 5.372 9 C 0.050 3.950 10 C -0.224 4.224 11 C -0.164 4.164 12 C -0.222 4.222 13 C 0.002 3.998 14 F -0.140 7.140 15 C -0.004 4.004 16 C -0.532 4.532 17 H 0.095 0.905 18 C -0.176 4.176 19 N -0.456 5.456 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.179 1.179 24 C -0.082 4.082 25 N -0.307 5.307 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.229 0.771 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.756 9.623 -2.472 16.169 hybrid contribution 1.184 -0.455 1.081 1.667 sum -11.572 9.168 -1.391 14.829 Atomic orbital electron populations 1.21737 0.93264 1.01934 1.01989 1.22281 0.96800 0.96015 0.89718 0.92534 1.22551 0.99560 0.95939 0.97233 1.22246 0.95279 0.99660 0.94150 0.90322 1.21267 0.90690 0.89144 0.96846 1.44176 1.21316 1.38316 1.33407 1.17907 0.89098 0.93531 0.94468 1.20438 0.99509 1.04105 0.98349 1.20433 0.95709 0.98565 1.01677 1.20681 1.02031 1.01036 0.98471 1.17980 0.94710 0.91331 0.95734 1.91246 1.76423 1.58431 1.87884 1.17444 0.92922 0.94622 0.95425 1.19062 0.94726 1.35175 1.04217 0.90487 1.26433 0.94175 0.97538 0.99417 1.69871 1.06797 1.36669 1.32288 0.85472 0.78779 0.79054 0.77759 1.19367 1.20133 1.17919 1.22942 0.91300 0.98023 0.95970 1.63005 1.27809 1.31206 1.08655 0.92608 0.93005 0.91002 0.89601 0.90123 0.92213 0.93159 0.77050 0.85478 0.84785 0.87207 0.91019 0.94306 0.91538 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.32 71.98 0.67 -1.34 16 2 C 0.06 1.09 3.89 45.06 0.18 1.27 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -2.08 6.17 31.62 0.20 -1.89 16 5 C -0.09 -2.25 3.14 -9.44 -0.03 -2.28 16 6 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.15 4.10 4.22 86.38 0.36 4.47 16 8 N -0.74 -28.16 5.48 -338.12 -1.85 -30.01 16 9 C 0.15 7.00 6.68 38.94 0.26 7.26 16 10 C -0.20 -8.20 9.29 22.36 0.21 -8.00 16 11 C -0.14 -5.96 10.03 22.40 0.22 -5.73 16 12 C -0.20 -9.59 9.99 22.28 0.22 -9.36 16 13 C 0.02 1.34 6.68 22.83 0.15 1.49 16 14 F -0.16 -9.41 14.27 44.97 0.64 -8.77 16 15 C 0.00 0.07 5.41 -21.12 -0.11 -0.05 16 16 C -0.50 -27.11 8.13 23.35 0.19 -26.92 16 17 H 0.08 3.94 7.14 -2.91 -0.02 3.92 16 18 C 0.04 2.05 4.52 85.23 0.39 2.44 16 19 N -0.83 -46.99 11.11 21.83 0.24 -46.75 16 20 Si 0.97 41.25 29.60 68.60 2.03 43.28 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 24 C 0.05 1.19 6.68 86.65 0.58 1.77 16 25 N -0.68 -14.52 7.14 -480.19 -3.43 -17.95 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.39 7.69 -2.39 -0.02 1.37 16 30 H 0.08 1.32 7.86 -2.39 -0.02 1.30 16 31 H 0.06 1.60 7.94 -2.39 -0.02 1.58 16 32 H 0.05 1.42 7.90 -2.39 -0.02 1.40 16 33 H 0.39 15.57 6.76 -92.71 -0.63 14.94 16 34 H 0.13 4.31 6.71 -2.91 -0.02 4.29 16 35 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.28 14.80 8.30 -92.71 -0.77 14.03 16 38 H 0.04 1.02 8.02 -2.39 -0.02 1.00 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.34 6.42 8.92 -89.70 -0.80 5.62 16 Total: -1.00 -62.83 325.26 0.74 -62.09 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.37 Total: 34.99 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 3.48 Total: -36.87 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -5.04 Total: -94.71 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 0.64 Total: -8.77 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -62.83 0.74 -62.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162558926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.632 kcal (2) G-P(sol) polarization free energy of solvation -62.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds