Wall clock time and date at job start Wed Apr 15 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47097 * 2 1 4 4 N 1.46898 * 109.47379 * 120.00004 * 2 1 3 5 5 C 1.47476 * 111.00180 * 165.88991 * 4 2 1 6 6 C 1.53523 * 87.93211 * 221.29665 * 5 4 2 7 7 N 1.46490 * 114.17205 * 139.67136 * 6 5 4 8 8 C 1.39681 * 120.00372 * 111.15751 * 7 6 5 9 9 C 1.39289 * 119.93240 * 0.02562 * 8 7 6 10 10 C 1.38713 * 120.39687 * 179.97438 * 9 8 7 11 11 F 1.35103 * 119.85993 * 179.97438 * 10 9 8 12 12 C 1.37915 * 120.27081 * 0.02562 * 10 9 8 13 13 C 1.40706 * 119.86983 * 359.97438 * 12 10 9 14 14 C 1.41420 * 120.19160 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99940 * 28.22294 * 14 13 12 16 16 C 1.39918 * 119.99599 * 208.21887 * 14 13 12 17 17 N 1.30832 * 120.00394 * 13.09893 * 16 14 13 18 18 Si 1.86806 * 119.99839 * 193.09760 * 16 14 13 19 19 H 1.48500 * 109.46613 * 90.00539 * 18 16 14 20 20 H 1.48505 * 109.47058 * 210.00116 * 18 16 14 21 21 H 1.48491 * 109.47111 * 330.00298 * 18 16 14 22 22 C 1.38291 * 119.94103 * 179.72915 * 8 7 6 23 23 C 1.47476 * 110.99981 * 69.91495 * 4 2 1 24 24 H 1.09000 * 109.47310 * 299.99918 * 1 2 3 25 25 H 1.09001 * 109.47060 * 60.00227 * 1 2 3 26 26 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47310 * 240.00082 * 2 1 3 28 28 H 1.09004 * 109.47177 * 304.89218 * 3 2 1 29 29 H 1.08995 * 109.47288 * 64.89856 * 3 2 1 30 30 H 1.09004 * 109.46913 * 184.89672 * 3 2 1 31 31 H 1.08995 * 113.47942 * 336.06081 * 5 4 2 32 32 H 1.09001 * 113.47477 * 106.53175 * 5 4 2 33 33 H 1.09000 * 114.34005 * 272.36774 * 6 5 4 34 34 H 0.97004 * 120.00197 * 291.15778 * 7 6 5 35 35 H 1.08001 * 119.80491 * 359.97349 * 9 8 7 36 36 H 1.07997 * 120.06136 * 179.97438 * 12 10 9 37 37 H 0.97002 * 120.00451 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.13666 * 359.97438 * 22 8 7 39 39 H 1.09001 * 113.48125 * 253.47179 * 23 4 2 40 40 H 1.09004 * 113.47656 * 23.93822 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4548 -1.0097 1.0776 6 6 3.1492 -2.3762 1.7071 7 7 3.8746 -3.4933 1.0973 8 6 4.8729 -4.1539 1.8170 9 6 5.1773 -3.7496 3.1147 10 6 6.1665 -4.3991 3.8384 11 9 6.4533 -3.9976 5.0961 12 6 6.8593 -5.4522 3.2788 13 6 6.5610 -5.8700 1.9687 14 6 7.2668 -6.9494 1.3885 15 1 7.6762 -7.7268 2.0165 16 6 7.4344 -7.0103 0.0007 17 7 7.1723 -5.9617 -0.7365 18 14 8.0323 -8.5889 -0.7995 19 1 6.8658 -9.4373 -1.1527 20 1 8.7968 -8.2614 -2.0298 21 1 8.9094 -9.3226 0.1478 22 6 5.5530 -5.2119 1.2421 23 6 1.7501 -2.1403 1.1209 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.6069 1.9811 -0.8429 29 1 1.7501 1.9304 0.9306 30 1 3.1265 1.4437 -0.0877 31 1 3.7992 -1.0744 0.0455 32 1 4.0929 -0.3793 1.6969 33 1 3.1806 -2.3861 2.7966 34 1 3.6616 -3.7743 0.1936 35 1 4.6399 -2.9255 3.5602 36 1 7.6291 -5.9552 3.8451 37 1 7.2889 -6.0038 -1.6986 38 1 5.3136 -5.5288 0.2378 39 1 0.9436 -2.4681 1.7768 40 1 1.6395 -2.5066 0.1002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168316919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:33 Heat of formation + Delta-G solvation = -11.463206 kcal Electronic energy + Delta-G solvation = -21198.683845 eV Core-core repulsion = 17927.515300 eV Total energy + Delta-G solvation = -3271.168545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.57386 -41.46036 -39.37183 -36.47800 -35.21409 -33.94458 -31.20434 -29.72828 -28.58133 -27.43470 -26.73843 -26.31240 -23.22640 -22.54152 -21.27951 -20.88242 -19.45459 -17.92889 -17.40558 -17.03976 -16.84247 -16.44658 -16.25409 -16.07119 -15.80738 -15.58654 -15.02993 -14.66865 -14.41058 -13.85524 -13.73920 -13.67110 -13.41536 -13.08599 -12.95128 -12.86339 -12.79739 -12.60521 -12.22256 -12.19126 -12.13403 -11.94986 -11.64907 -11.47286 -11.46373 -11.10948 -10.42934 -9.95458 -9.25139 -8.65654 -8.06551 -6.44041 0.90274 1.06492 1.41916 1.53470 1.54996 2.23158 2.52037 2.72153 3.13313 3.49678 3.70968 3.76163 3.91302 3.94874 4.02185 4.11957 4.39640 4.40977 4.52932 4.67451 4.71258 4.76537 4.81538 4.86115 4.89404 4.92852 5.00449 5.01240 5.09114 5.12971 5.27455 5.32691 5.44563 5.47427 5.68462 5.81620 6.07991 6.08624 6.12207 6.45481 6.82013 6.89691 6.93862 7.10659 8.34938 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.004258 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.039770 B = 6574.331097 C = 7734.043834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.037 3.963 3 C -0.139 4.139 4 N -0.467 5.467 5 C -0.015 4.015 6 C 0.128 3.872 7 N -0.731 5.731 8 C 0.249 3.751 9 C -0.330 4.330 10 C 0.137 3.863 11 F -0.162 7.162 12 C -0.312 4.312 13 C 0.135 3.865 14 C -0.495 4.495 15 H 0.076 0.924 16 C 0.040 3.960 17 N -0.818 5.818 18 Si 0.984 3.016 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.261 1.261 22 C -0.252 4.252 23 C 0.000 4.000 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.399 0.601 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.288 0.712 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 8.574 -3.622 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.197 4.197 4 N -0.191 5.191 5 C -0.146 4.146 6 C 0.020 3.980 7 N -0.361 5.361 8 C 0.147 3.853 9 C -0.353 4.353 10 C 0.117 3.883 11 F -0.141 7.141 12 C -0.333 4.333 13 C 0.131 3.869 14 C -0.524 4.524 15 H 0.094 0.906 16 C -0.176 4.176 17 N -0.444 5.444 18 Si 0.804 3.196 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.277 4.277 23 C -0.130 4.130 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.235 0.765 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.237 9.267 -3.155 14.903 hybrid contribution 0.876 -1.003 -1.084 1.717 sum -10.361 8.264 -4.239 13.915 Atomic orbital electron populations 1.21761 0.92918 1.02189 1.02729 1.22305 0.97219 0.96387 0.91238 1.21747 1.00585 0.94631 1.02710 1.68942 1.05560 1.09027 1.35561 1.24397 0.92090 0.97269 1.00864 1.22455 0.91764 0.85016 0.98727 1.44387 1.39099 1.35785 1.16828 1.17308 0.87773 0.90411 0.89834 1.20004 1.08660 1.10010 0.96617 1.17370 0.96805 0.95551 0.78557 1.91335 1.93135 1.90444 1.39184 1.20966 1.08107 1.04178 1.00063 1.17402 0.88922 0.90862 0.89695 1.19815 1.32182 1.07472 0.92961 0.90566 1.26687 0.93194 1.00325 0.97350 1.69872 1.36655 1.30065 1.07780 0.85178 0.79086 0.77464 0.77828 1.18498 1.19246 1.18520 1.20716 1.02280 1.02519 1.02156 1.24193 0.97643 0.89683 1.01437 0.92059 0.90810 0.92733 0.93717 0.90672 0.92101 0.93525 0.91319 0.90197 0.87360 0.76527 0.85899 0.88254 0.90110 0.87045 0.88529 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.25 71.98 0.67 -1.52 16 2 C 0.04 0.72 2.27 44.92 0.10 0.82 16 3 C -0.14 -2.43 9.24 71.98 0.67 -1.77 16 4 N -0.47 -10.67 6.13 -902.48 -5.53 -16.19 16 5 C -0.02 -0.40 6.90 83.58 0.58 0.18 16 6 C 0.13 3.61 4.41 45.45 0.20 3.82 16 7 N -0.73 -25.13 5.56 -318.31 -1.77 -26.90 16 8 C 0.25 10.98 6.64 38.16 0.25 11.23 16 9 C -0.33 -14.70 9.26 22.64 0.21 -14.49 16 10 C 0.14 6.61 7.28 22.31 0.16 6.77 16 11 F -0.16 -7.35 17.26 44.97 0.78 -6.58 16 12 C -0.31 -16.20 9.76 22.80 0.22 -15.98 16 13 C 0.13 7.28 5.54 -21.31 -0.12 7.16 16 14 C -0.49 -26.44 9.05 23.46 0.21 -26.23 16 15 H 0.08 3.96 7.88 -2.91 -0.02 3.94 16 16 C 0.04 1.96 5.21 85.25 0.44 2.41 16 17 N -0.82 -41.13 10.95 21.82 0.24 -40.89 16 18 Si 0.98 37.19 29.58 68.60 2.03 39.22 16 19 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 C -0.25 -12.76 8.49 22.86 0.19 -12.56 16 23 C 0.00 0.00 6.57 83.58 0.55 0.55 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.05 0.86 7.52 -2.39 -0.02 0.85 16 27 H 0.04 0.89 7.56 -2.39 -0.02 0.87 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.88 7.80 -2.38 -0.02 0.86 16 31 H 0.07 1.80 7.70 -2.39 -0.02 1.79 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.11 3.28 6.08 -2.39 -0.01 3.27 16 34 H 0.40 12.84 8.76 -92.71 -0.81 12.03 16 35 H 0.12 4.89 6.00 -2.91 -0.02 4.87 16 36 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 37 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 38 H 0.11 5.77 6.29 -2.91 -0.02 5.75 16 39 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 1.63 7.76 -2.38 -0.02 1.61 16 Total: -1.00 -56.77 329.22 0.32 -56.46 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.23 Total: 34.51 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 4.34 Total: -39.62 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -7.06 Total: -83.99 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.78 Total: -6.58 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -56.77 0.32 -56.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168316919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.992 kcal (2) G-P(sol) polarization free energy of solvation -56.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds