Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50701 * 109.47180 * 119.99817 * 2 1 3 5 5 H 1.08002 * 120.00169 * 120.00112 * 4 2 1 6 6 C 1.37879 * 119.99856 * 299.99930 * 4 2 1 7 7 N 1.31514 * 120.00368 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99855 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47227 * 60.00497 * 8 6 4 10 10 H 1.48507 * 109.47017 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47054 * 300.00188 * 8 6 4 12 12 N 1.46499 * 109.47471 * 239.99888 * 2 1 3 13 13 C 1.34771 * 119.99965 * 84.99609 * 12 2 1 14 14 O 1.21697 * 120.00292 * 0.02562 * 13 12 2 15 15 C 1.46427 * 120.00121 * 179.97438 * 13 12 2 16 16 C 1.34811 * 120.00588 * 179.97438 * 15 13 12 17 17 C 1.47207 * 120.00419 * 180.02562 * 16 15 13 18 18 C 1.39858 * 120.16260 * 0.23587 * 17 16 15 19 19 C 1.37880 * 119.85031 * 180.27518 * 18 17 16 20 20 C 1.38405 * 120.18497 * 359.73903 * 19 18 17 21 21 C 1.38493 * 120.33004 * 0.02562 * 20 19 18 22 22 Cl 1.73596 * 119.92327 * 179.97438 * 21 20 19 23 23 C 1.38031 * 120.14719 * 359.97438 * 21 20 19 24 24 H 1.08998 * 109.47468 * 60.00441 * 1 2 3 25 25 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47500 * 299.99731 * 1 2 3 27 27 H 0.96993 * 120.00202 * 179.97438 * 7 6 4 28 28 H 0.97005 * 120.00027 * 265.00116 * 12 2 1 29 29 H 1.08006 * 119.99860 * 0.02562 * 15 13 12 30 30 H 1.08006 * 119.99553 * 0.02562 * 16 15 13 31 31 H 1.07997 * 120.07479 * 0.02562 * 18 17 16 32 32 H 1.08003 * 119.90680 * 179.72822 * 19 18 17 33 33 H 1.07999 * 119.83083 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.09113 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8259 -0.4204 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0184 -0.6906 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8580 1.1626 -2.4117 15 6 2.6357 -0.7084 -3.5525 16 6 2.7640 -0.0361 -4.7139 17 6 3.2548 -0.7301 -5.9158 18 6 3.5843 -2.0881 -5.8579 19 6 4.0488 -2.7303 -6.9861 20 6 4.1844 -2.0362 -8.1758 21 6 3.8556 -0.6925 -8.2430 22 17 4.0304 0.1679 -9.7405 23 6 3.3894 -0.0361 -7.1219 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7081 1.1609 3.4844 28 1 2.2491 -1.6318 -1.1525 29 1 2.8927 -1.7563 -3.5039 30 1 2.5066 1.0117 -4.7626 31 1 3.4791 -2.6314 -4.9305 32 1 4.3077 -3.7779 -6.9413 33 1 4.5491 -2.5448 -9.0560 34 1 3.1337 1.0119 -7.1752 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491888401.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = -13.034804 kcal Electronic energy + Delta-G solvation = -17890.437368 eV Core-core repulsion = 14813.985292 eV Total energy + Delta-G solvation = -3076.452076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.67358 -38.78539 -36.79606 -34.95562 -33.88350 -32.38630 -31.22155 -29.97570 -28.62095 -25.28205 -24.41029 -23.00376 -21.77349 -20.02735 -19.17061 -17.64114 -17.09560 -16.00700 -15.63048 -15.52730 -15.05881 -14.31310 -14.11885 -14.04391 -13.79848 -13.74556 -13.08274 -12.45367 -12.26990 -12.00665 -11.89264 -11.69227 -11.44932 -11.12975 -11.09630 -10.98132 -10.77604 -10.38030 -10.29714 -10.24349 -9.17297 -9.13095 -9.06890 -8.56893 -8.44621 -7.90113 -6.13427 -4.23085 0.39160 0.90714 1.81776 1.96023 3.24703 3.30046 3.31085 3.41659 3.97831 4.02098 4.33864 4.47640 4.59058 4.73074 4.88149 5.04388 5.11907 5.18831 5.38379 5.51137 5.65667 5.84603 5.89217 6.02435 6.37136 6.46920 6.51117 6.82181 6.95562 7.13653 7.43256 7.54803 7.68321 7.90155 8.13549 8.63825 8.75998 9.09175 9.44414 10.92584 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.042099 B = 0.002720 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.941520 B =10292.234481 C =10718.216023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.527 3.473 14 O -0.557 6.557 15 C -0.174 4.174 16 C -0.057 4.057 17 C -0.043 4.043 18 C -0.105 4.105 19 C -0.106 4.106 20 C -0.111 4.111 21 C -0.035 4.035 22 Cl -0.072 7.072 23 C -0.095 4.095 24 H 0.015 0.985 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.265 0.735 28 H 0.390 0.610 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -7.235 -20.253 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.347 5.347 13 C 0.313 3.687 14 O -0.438 6.438 15 C -0.195 4.195 16 C -0.077 4.077 17 C -0.044 4.044 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.061 4.061 22 Cl -0.043 7.043 23 C -0.114 4.114 24 H 0.034 0.966 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.222 0.778 29 H 0.143 0.857 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.534 -6.189 -20.209 21.848 hybrid contribution 0.435 -0.912 0.739 1.252 sum 5.968 -7.101 -19.471 21.567 Atomic orbital electron populations 1.22077 0.98361 0.99160 1.00970 1.18769 0.91099 0.94054 0.79947 0.93256 1.21180 1.32585 1.13278 0.90336 0.92098 1.24893 0.94792 0.94954 0.99073 1.69890 1.35728 1.22426 1.24032 0.86496 0.79166 0.79576 0.81781 1.20161 1.21107 1.20153 1.46475 1.64155 1.13522 1.10529 1.18256 0.79364 0.87075 0.83964 1.90772 1.51825 1.15812 1.85402 1.23314 1.01881 1.00431 0.93897 1.22213 0.94985 1.00201 0.90318 1.19033 0.98867 0.93450 0.93029 1.21596 0.97654 0.93845 0.99180 1.21065 0.99133 1.00291 0.91955 1.21154 1.00432 0.92347 0.99077 1.20819 1.04255 0.93217 0.87856 1.98376 1.96314 1.77072 1.32579 1.21278 0.98816 1.00662 0.90600 0.96594 0.95439 0.89094 0.92479 0.77790 0.85710 0.84399 0.84659 0.84771 0.84962 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.70 2.56 -69.09 -0.18 6.53 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -14.13 8.73 -34.44 -0.30 -14.44 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -14.51 5.06 -56.33 -0.29 -14.80 16 13 C 0.53 10.50 7.71 -12.97 -0.10 10.40 16 14 O -0.56 -13.36 15.89 5.19 0.08 -13.28 16 15 C -0.17 -2.51 9.41 -37.50 -0.35 -2.86 16 16 C -0.06 -0.76 9.46 -37.16 -0.35 -1.11 16 17 C -0.04 -0.48 5.87 -105.07 -0.62 -1.10 16 18 C -0.10 -0.99 9.41 -39.11 -0.37 -1.35 16 19 C -0.11 -0.85 10.03 -39.65 -0.40 -1.25 16 20 C -0.11 -0.93 9.82 -39.43 -0.39 -1.32 16 21 C -0.03 -0.34 6.31 -39.56 -0.25 -0.59 16 22 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 23 C -0.09 -0.99 9.57 -39.07 -0.37 -1.36 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 6.83 8.52 -40.82 -0.35 6.49 16 29 H 0.13 1.38 6.07 -52.48 -0.32 1.06 16 30 H 0.14 1.95 7.52 -52.48 -0.39 1.55 16 31 H 0.14 1.08 6.17 -52.49 -0.32 0.75 16 32 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -30.75 313.96 -8.54 -39.29 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.75 Total: 5.04 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -3.43 Total: -10.09 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.34 Total: -39.04 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.28 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.75 -8.54 -39.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491888401.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.260 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds