Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46952 * 2 1 4 4 C 1.50696 * 109.47167 * 239.99829 * 2 1 3 5 5 H 1.08004 * 119.99794 * 239.99825 * 4 2 1 6 6 C 1.37872 * 120.00141 * 60.00140 * 4 2 1 7 7 N 1.31517 * 120.00200 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47118 * 90.00082 * 8 6 4 10 10 H 1.48496 * 109.47052 * 209.99745 * 8 6 4 11 11 H 1.48491 * 109.47007 * 329.99839 * 8 6 4 12 12 N 1.46499 * 109.46774 * 119.99339 * 2 1 3 13 13 C 1.34770 * 120.00385 * 274.99920 * 12 2 1 14 14 O 1.21697 * 120.00245 * 0.02562 * 13 12 2 15 15 C 1.46436 * 119.99987 * 180.02562 * 13 12 2 16 16 C 1.34810 * 119.99724 * 173.30139 * 15 13 12 17 17 C 1.47213 * 120.00227 * 348.75002 * 16 15 13 18 18 C 1.39852 * 120.16181 * 131.98430 * 17 16 15 19 19 C 1.37877 * 119.85127 * 179.97438 * 18 17 16 20 20 C 1.38404 * 120.18345 * 359.97438 * 19 18 17 21 21 C 1.38492 * 120.33395 * 0.04249 * 20 19 18 22 22 Cl 1.73597 * 119.92919 * 179.97438 * 21 20 19 23 23 C 1.38028 * 120.14178 * 359.95914 * 21 20 19 24 24 H 1.08997 * 109.47478 * 300.00202 * 1 2 3 25 25 H 1.09001 * 109.47281 * 60.00263 * 1 2 3 26 26 H 1.09002 * 109.47059 * 180.02562 * 1 2 3 27 27 H 0.96993 * 120.00198 * 180.02562 * 7 6 4 28 28 H 0.97008 * 119.99911 * 95.00468 * 12 2 1 29 29 H 1.07995 * 120.00001 * 353.30598 * 15 13 12 30 30 H 1.08001 * 119.99599 * 168.74801 * 16 15 13 31 31 H 1.07997 * 120.07640 * 359.70663 * 18 17 16 32 32 H 1.07999 * 119.90573 * 180.02562 * 19 18 17 33 33 H 1.08003 * 119.83139 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.09087 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3428 -2.1618 -4.4118 10 1 2.4867 -0.1416 -5.1122 11 1 3.6293 -1.7585 -3.7121 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3571 14 8 1.8572 1.1626 2.4119 15 6 2.6356 -0.7082 3.5527 16 6 2.8928 -0.0094 4.6765 17 6 2.9237 1.4619 4.6375 18 6 2.2280 2.2049 5.5966 19 6 2.2618 3.5826 5.5544 20 6 2.9823 4.2311 4.5665 21 6 3.6737 3.5029 3.6128 22 17 4.5735 4.3271 2.3780 23 6 3.6492 2.1231 3.6422 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7082 1.1607 -3.4844 28 1 2.2490 -1.6317 1.1528 29 1 2.7898 -1.7769 3.5341 30 1 3.0763 -0.5291 5.6053 31 1 1.6621 1.7008 6.3659 32 1 1.7252 4.1573 6.2948 33 1 3.0045 5.3106 4.5386 34 1 4.1891 1.5560 2.8983 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491888402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = -0.699677 kcal Electronic energy + Delta-G solvation = -18983.725836 eV Core-core repulsion = 15907.808651 eV Total energy + Delta-G solvation = -3075.917185 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.59956 -38.32222 -36.19099 -34.93061 -33.43876 -32.36750 -30.51867 -29.87418 -28.52137 -25.25054 -24.02137 -22.36355 -21.82258 -20.04837 -19.10633 -17.52927 -16.35495 -16.00374 -15.35864 -15.16732 -14.94332 -14.18317 -14.02650 -13.83443 -13.36887 -13.11376 -12.99041 -12.46311 -12.25932 -11.68331 -11.47613 -11.32315 -11.19834 -11.08308 -10.94152 -10.73136 -10.59520 -10.31160 -10.22629 -9.71929 -9.15279 -9.02449 -8.55339 -8.45729 -8.00665 -7.80913 -6.10879 -4.20304 0.93336 1.49633 1.98039 2.44643 3.24884 3.31841 3.33991 3.88205 3.98626 4.16909 4.42038 4.76913 4.98362 5.18092 5.21272 5.28124 5.35744 5.56361 5.63938 5.82502 6.02419 6.23433 6.29634 6.46466 6.53329 6.66923 6.85013 6.98425 6.99845 7.17131 7.48210 7.58668 7.71499 7.93619 8.16664 8.69002 8.80022 9.15564 9.47436 10.95032 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.004975 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.122108 B = 5626.957425 C = 6408.595210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.701 5.701 13 C 0.518 3.482 14 O -0.540 6.540 15 C -0.186 4.186 16 C -0.055 4.055 17 C -0.040 4.040 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.036 4.036 22 Cl -0.077 7.077 23 C -0.034 4.034 24 H 0.014 0.986 25 H 0.089 0.911 26 H 0.025 0.975 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 0.716 15.743 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.305 3.695 14 O -0.421 6.421 15 C -0.207 4.207 16 C -0.075 4.075 17 C -0.040 4.040 18 C -0.122 4.122 19 C -0.139 4.139 20 C -0.128 4.128 21 C -0.063 4.063 22 Cl -0.048 7.048 23 C -0.053 4.053 24 H 0.033 0.967 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.364 1.758 15.449 16.150 hybrid contribution 0.311 -0.993 -1.157 1.556 sum 4.675 0.766 14.292 15.057 Atomic orbital electron populations 1.22066 0.98508 0.98988 1.00876 1.18734 0.90968 0.94025 0.79976 0.93252 1.21213 1.32454 1.13190 0.90373 0.92142 1.24883 0.94827 0.94922 0.99038 1.69904 1.35854 1.22417 1.23848 0.86461 0.79158 0.79281 0.82281 1.20562 1.21067 1.19861 1.46536 1.64186 1.13520 1.10536 1.18418 0.79944 0.87264 0.83921 1.90851 1.51317 1.15193 1.84719 1.23383 1.02346 1.00565 0.94430 1.22194 0.95777 0.92098 0.97438 1.18727 0.97581 0.92823 0.94877 1.21186 0.98814 0.93886 0.98350 1.20836 0.99878 0.94370 0.98785 1.21002 0.97457 0.99880 0.94504 1.20672 0.99914 0.92643 0.93078 1.98360 1.73723 1.78846 1.53881 1.20984 0.96927 0.92011 0.95339 0.96677 0.89208 0.95598 0.92592 0.77971 0.85250 0.84822 0.85866 0.85617 0.85601 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 2 C 0.26 6.76 2.56 -69.08 -0.18 6.59 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.70 -14.51 5.06 -56.32 -0.29 -14.79 16 13 C 0.52 10.11 6.92 -12.96 -0.09 10.02 16 14 O -0.54 -12.34 12.14 5.19 0.06 -12.28 16 15 C -0.19 -2.63 9.93 -37.50 -0.37 -3.00 16 16 C -0.06 -0.69 9.78 -37.15 -0.36 -1.06 16 17 C -0.04 -0.59 4.34 -105.06 -0.46 -1.04 16 18 C -0.10 -1.35 9.79 -39.11 -0.38 -1.74 16 19 C -0.12 -1.51 10.03 -39.65 -0.40 -1.91 16 20 C -0.11 -1.54 9.82 -39.43 -0.39 -1.92 16 21 C -0.04 -0.59 6.31 -39.56 -0.25 -0.84 16 22 Cl -0.08 -1.24 28.95 -51.86 -1.50 -2.74 16 23 C -0.03 -0.57 6.56 -39.08 -0.26 -0.82 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.39 6.91 8.52 -40.82 -0.35 6.57 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 34 H 0.13 2.23 7.45 -52.49 -0.39 1.84 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -31.10 309.90 -8.58 -39.68 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.95 Total: 6.10 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.18 Total: -11.87 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.34 Total: -39.31 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.06 Total: -12.28 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.10 -8.58 -39.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491888402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.976 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds