Wall clock time and date at job start Wed Apr 15 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46925 * 2 1 4 4 C 1.50700 * 109.47182 * 120.00139 * 2 1 3 5 5 H 1.08004 * 119.99983 * 119.99827 * 4 2 1 6 6 C 1.37873 * 120.00013 * 300.00236 * 4 2 1 7 7 N 1.31512 * 119.99804 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00196 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47135 * 90.00184 * 8 6 4 10 10 H 1.48500 * 109.47252 * 210.00301 * 8 6 4 11 11 H 1.48496 * 109.47212 * 330.00355 * 8 6 4 12 12 N 1.46499 * 109.47009 * 240.00365 * 2 1 3 13 13 C 1.34779 * 120.00299 * 84.99762 * 12 2 1 14 14 O 1.21283 * 119.99387 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00132 * 179.97438 * 13 12 2 16 16 H 1.08995 * 112.83183 * 308.38817 * 15 13 12 17 17 C 1.52253 * 113.42834 * 177.08605 * 15 13 12 18 18 C 1.50555 * 87.23960 * 245.27739 * 17 15 13 19 19 C 1.37753 * 92.76233 * 0.17335 * 18 17 15 20 20 C 1.38775 * 119.93423 * 179.79536 * 19 18 17 21 21 C 1.38114 * 120.11927 * 0.02562 * 20 19 18 22 22 C 1.38166 * 119.99922 * 359.97438 * 21 20 19 23 23 C 1.38223 * 119.96681 * 0.02562 * 22 21 20 24 24 Cl 1.73604 * 119.97012 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47122 * 299.99622 * 1 2 3 26 26 H 1.08996 * 109.47563 * 60.00019 * 1 2 3 27 27 H 1.09005 * 109.47237 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99728 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99941 * 264.99909 * 12 2 1 30 30 H 1.09000 * 113.68590 * 130.67982 * 17 15 13 31 31 H 1.08998 * 113.49678 * 359.85429 * 17 15 13 32 32 H 1.08003 * 119.93616 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.99763 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.01895 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8590 1.1587 -2.4114 15 6 2.6499 -0.7284 -3.5875 16 1 3.5818 -1.2663 -3.4141 17 6 2.6702 0.1525 -4.8292 18 6 1.6189 -0.7591 -5.4042 19 6 1.5975 -1.5537 -4.2792 20 6 0.7439 -2.6462 -4.2191 21 6 -0.0838 -2.9384 -5.2855 22 6 -0.0632 -2.1422 -6.4144 23 6 0.7863 -1.0536 -6.4761 24 17 0.8118 -0.0526 -7.8943 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9040 -0.5276 4.4374 29 1 2.2490 -1.6317 -1.1527 30 1 3.6157 0.1240 -5.3709 31 1 2.3159 1.1672 -4.6480 32 1 0.7274 -3.2694 -3.3372 33 1 -0.7477 -3.7889 -5.2365 34 1 -0.7100 -2.3706 -7.2486 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528313119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:16 Heat of formation + Delta-G solvation = 18.522598 kcal Electronic energy + Delta-G solvation = -18948.991569 eV Core-core repulsion = 15873.907924 eV Total energy + Delta-G solvation = -3075.083644 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.14871 -38.69708 -36.68790 -35.59844 -34.81462 -32.42976 -30.75365 -29.98875 -27.77655 -25.45469 -25.06378 -22.52923 -21.46942 -20.36424 -19.48601 -17.66851 -16.99426 -16.22221 -15.98595 -15.42941 -15.08844 -14.78463 -14.17301 -13.78250 -13.47592 -13.16767 -13.10436 -12.83233 -12.45758 -12.21473 -11.97102 -11.79295 -11.60362 -11.51734 -11.25866 -10.92626 -10.84347 -10.80186 -10.21654 -9.80150 -9.44915 -9.26653 -8.79004 -8.76734 -8.71059 -8.21868 -6.23656 -4.26499 0.98337 1.05133 2.02916 3.01074 3.21808 3.33957 3.38208 3.41315 3.84246 4.07539 4.22904 4.29461 4.45743 4.77852 5.11022 5.12320 5.15380 5.29317 5.40903 5.44863 5.59230 5.77149 5.94787 6.03755 6.17375 6.28212 6.34855 6.41205 6.53002 6.62583 6.82510 7.14771 7.23623 7.47861 8.09627 8.47269 8.71661 8.85178 9.37063 10.88446 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.004087 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.802490 B = 6848.952027 C = 7064.979386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.695 5.695 13 C 0.520 3.480 14 O -0.548 6.548 15 C -0.070 4.070 16 H 0.124 0.876 17 C -0.055 4.055 18 C -0.111 4.111 19 C -0.101 4.101 20 C -0.082 4.082 21 C -0.108 4.108 22 C -0.109 4.109 23 C -0.011 4.011 24 Cl -0.079 7.079 25 H 0.047 0.953 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.268 0.732 29 H 0.396 0.604 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -4.065 -19.484 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.133 3.867 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.342 5.342 13 C 0.304 3.696 14 O -0.427 6.427 15 C -0.091 4.091 16 H 0.142 0.858 17 C -0.092 4.092 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.100 4.100 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.037 4.037 24 Cl -0.050 7.050 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.227 -3.141 -19.405 19.784 hybrid contribution -0.605 0.190 0.180 0.659 sum -2.832 -2.951 -19.225 19.656 Atomic orbital electron populations 1.22443 0.99272 1.00851 0.99311 1.19133 0.90168 0.94708 0.82723 0.93285 1.21026 1.33350 1.14476 0.88504 0.90157 1.24822 0.95457 0.96681 0.95513 1.69866 1.44837 1.40100 0.98061 0.86883 0.80540 0.83625 0.77483 1.20299 1.22104 1.18664 1.46153 1.64639 1.13817 1.09589 1.19832 0.78553 0.87150 0.84062 1.90657 1.51248 1.15944 1.84823 1.21232 0.97943 0.95490 0.94416 0.85807 1.21446 0.96607 0.99469 0.91681 1.21713 0.97576 0.98820 0.93078 1.21419 0.97741 0.95293 0.95748 1.20631 0.94348 0.95996 0.98994 1.20936 0.99220 0.99898 0.92582 1.20906 0.98554 0.93897 0.99424 1.20407 0.99792 0.95164 0.88382 1.98359 1.97936 1.69135 1.39600 0.93416 0.94606 0.92831 0.92254 0.77059 0.88280 0.86737 0.85170 0.84546 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.96 37.16 0.33 -3.25 16 2 C 0.24 5.55 2.15 -69.08 -0.15 5.40 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 4 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 5 H 0.08 2.23 7.98 -52.48 -0.42 1.82 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 8 Si 0.89 21.62 24.37 -169.99 -4.14 17.47 16 9 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.69 -13.40 5.07 -54.93 -0.28 -13.68 16 13 C 0.52 9.52 7.32 -10.98 -0.08 9.44 16 14 O -0.55 -12.04 15.33 5.55 0.09 -11.96 16 15 C -0.07 -0.94 4.29 -93.66 -0.40 -1.34 16 16 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.06 -0.70 7.69 -28.62 -0.22 -0.92 16 18 C -0.11 -1.45 7.21 -104.92 -0.76 -2.21 16 19 C -0.10 -1.32 6.90 -104.96 -0.72 -2.05 16 20 C -0.08 -0.94 10.06 -39.43 -0.40 -1.34 16 21 C -0.11 -1.08 10.04 -39.65 -0.40 -1.48 16 22 C -0.11 -1.14 9.82 -39.61 -0.39 -1.53 16 23 C -0.01 -0.13 6.33 -39.35 -0.25 -0.38 16 24 Cl -0.08 -0.90 28.96 -51.86 -1.50 -2.40 16 25 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.40 6.66 8.54 -40.82 -0.35 6.31 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.11 1.65 6.99 -51.93 -0.36 1.29 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 302.20 15.07 4.55 4.55 Total: -1.00 -31.28 302.20 -8.15 -39.43 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.79 Total: 4.04 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -3.85 Total: -12.12 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.50 Total: -39.03 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.47 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.28 -8.15 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528313119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.951 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds