Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46925 * 2 1 4 4 C 1.50700 * 109.47182 * 120.00139 * 2 1 3 5 5 H 1.08004 * 119.99983 * 119.99827 * 4 2 1 6 6 C 1.37873 * 120.00013 * 300.00236 * 4 2 1 7 7 N 1.31512 * 119.99804 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00196 * 359.97438 * 6 4 2 9 9 H 1.48507 * 109.47135 * 90.00184 * 8 6 4 10 10 H 1.48500 * 109.47252 * 210.00301 * 8 6 4 11 11 H 1.48496 * 109.47212 * 330.00355 * 8 6 4 12 12 N 1.46499 * 109.47009 * 240.00365 * 2 1 3 13 13 C 1.34779 * 120.00299 * 84.99762 * 12 2 1 14 14 O 1.21283 * 119.99387 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00132 * 179.97438 * 13 12 2 16 16 H 1.08995 * 112.83183 * 308.38817 * 15 13 12 17 17 C 1.52253 * 113.42834 * 177.08605 * 15 13 12 18 18 C 1.50555 * 87.23960 * 245.27739 * 17 15 13 19 19 C 1.37753 * 92.76233 * 0.17335 * 18 17 15 20 20 C 1.38775 * 119.93423 * 179.79536 * 19 18 17 21 21 C 1.38114 * 120.11927 * 0.02562 * 20 19 18 22 22 C 1.38166 * 119.99922 * 359.97438 * 21 20 19 23 23 C 1.38223 * 119.96681 * 0.02562 * 22 21 20 24 24 Cl 1.73604 * 119.97012 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47122 * 299.99622 * 1 2 3 26 26 H 1.08996 * 109.47563 * 60.00019 * 1 2 3 27 27 H 1.09005 * 109.47237 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99728 * 179.97438 * 7 6 4 29 29 H 0.97001 * 119.99941 * 264.99909 * 12 2 1 30 30 H 1.09000 * 113.68590 * 130.67982 * 17 15 13 31 31 H 1.08998 * 113.49678 * 359.85429 * 17 15 13 32 32 H 1.08003 * 119.93616 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.99763 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.01895 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4924 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8590 1.1587 -2.4114 15 6 2.6499 -0.7284 -3.5875 16 1 3.5818 -1.2663 -3.4141 17 6 2.6702 0.1525 -4.8292 18 6 1.6189 -0.7591 -5.4042 19 6 1.5975 -1.5537 -4.2792 20 6 0.7439 -2.6462 -4.2191 21 6 -0.0838 -2.9384 -5.2855 22 6 -0.0632 -2.1422 -6.4144 23 6 0.7863 -1.0536 -6.4761 24 17 0.8118 -0.0526 -7.8943 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.9040 -0.5276 4.4374 29 1 2.2490 -1.6317 -1.1527 30 1 3.6157 0.1240 -5.3709 31 1 2.3159 1.1672 -4.6480 32 1 0.7274 -3.2694 -3.3372 33 1 -0.7477 -3.7889 -5.2365 34 1 -0.7100 -2.3706 -7.2486 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528313119.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = -1.069460 kcal Electronic energy + Delta-G solvation = -18949.841144 eV Core-core repulsion = 15873.907924 eV Total energy + Delta-G solvation = -3075.933220 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.19279 -40.08125 -37.61410 -36.98002 -36.13849 -34.41049 -32.01128 -31.37720 -28.74716 -27.25472 -26.38465 -23.72037 -22.64992 -21.77479 -20.88489 -19.17860 -18.12278 -17.81187 -17.44207 -16.70296 -16.32749 -15.97895 -15.63790 -15.27682 -14.86421 -14.42729 -14.25950 -14.15226 -14.02072 -13.77991 -13.34215 -13.10217 -12.97317 -12.78886 -12.47054 -12.39546 -12.15641 -11.81176 -11.73066 -11.63659 -11.29241 -10.94465 -10.86370 -9.91699 -9.70910 -9.63598 -8.38274 -6.44025 0.10615 0.18553 1.15824 1.26980 1.35669 1.44590 1.62221 2.25777 2.33241 2.62966 2.97941 3.08227 3.31254 3.42084 3.92312 4.03803 4.25416 4.35135 4.43423 4.48894 4.55001 4.59109 4.68617 4.77591 4.86410 4.97773 5.01005 5.15614 5.30470 5.35300 5.41346 5.52036 5.61896 5.78886 6.12606 6.57578 6.82345 7.18307 7.39237 8.76822 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.031963 B = 0.004087 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.802490 B = 6848.952027 C = 7064.979386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.241 3.759 3 H 0.023 0.977 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.032 3.968 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.260 1.260 10 H -0.292 1.292 11 H -0.264 1.264 12 N -0.693 5.693 13 C 0.520 3.480 14 O -0.588 6.588 15 C -0.061 4.061 16 H 0.153 0.847 17 C -0.054 4.054 18 C -0.128 4.128 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.102 4.102 22 C -0.107 4.107 23 C -0.026 4.026 24 Cl -0.078 7.078 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.270 0.730 29 H 0.409 0.591 30 H 0.125 0.875 31 H 0.092 0.908 32 H 0.143 0.857 33 H 0.169 0.831 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -4.974 -21.090 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.136 3.864 3 H 0.041 0.959 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.168 4.168 7 N -0.571 5.571 8 Si 0.764 3.236 9 H -0.186 1.186 10 H -0.219 1.219 11 H -0.189 1.189 12 N -0.342 5.342 13 C 0.306 3.694 14 O -0.469 6.469 15 C -0.082 4.082 16 H 0.170 0.830 17 C -0.090 4.090 18 C -0.129 4.129 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.052 4.052 24 Cl -0.049 7.049 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.244 0.756 30 H 0.143 0.857 31 H 0.110 0.890 32 H 0.161 0.839 33 H 0.187 0.813 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.245 -4.076 -21.037 21.673 hybrid contribution -0.264 0.412 0.604 0.778 sum -3.509 -3.664 -20.433 21.053 Atomic orbital electron populations 1.22332 0.97957 1.01686 0.99222 1.18780 0.91110 0.93242 0.83247 0.95919 1.21234 1.32367 1.13643 0.89761 0.92206 1.25508 0.96766 0.99162 0.95392 1.69966 1.46600 1.41866 0.98652 0.86050 0.79865 0.80547 0.77179 1.18606 1.21926 1.18905 1.45980 1.64897 1.14369 1.08920 1.20600 0.77260 0.86728 0.84788 1.90636 1.52772 1.17916 1.85567 1.21168 0.99288 0.95781 0.91932 0.82983 1.21436 0.97977 0.98042 0.91582 1.21788 0.98205 0.99090 0.93771 1.21422 0.98582 0.96370 0.95610 1.20938 0.94081 0.95661 1.00065 1.21337 0.98724 1.00358 0.91580 1.21280 0.97953 0.92957 1.00315 1.20636 1.00256 0.95931 0.88417 1.98356 1.97954 1.69238 1.39347 0.94096 0.94013 0.91512 0.92033 0.75578 0.85662 0.89012 0.83926 0.81346 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.67 8.96 71.98 0.65 -6.02 16 2 C 0.24 11.28 2.15 44.25 0.10 11.37 16 3 H 0.02 1.20 6.63 -2.39 -0.02 1.18 16 4 C -0.53 -28.43 9.31 25.60 0.24 -28.19 16 5 H 0.06 3.37 7.98 -2.91 -0.02 3.35 16 6 C 0.03 1.76 5.45 84.65 0.46 2.23 16 7 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 8 Si 0.94 44.37 24.37 68.60 1.67 46.04 16 9 H -0.26 -11.61 6.87 99.48 0.68 -10.93 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.26 -12.53 6.53 99.48 0.65 -11.88 16 12 N -0.69 -26.33 5.07 -446.10 -2.26 -28.59 16 13 C 0.52 18.75 7.32 87.66 0.64 19.39 16 14 O -0.59 -26.01 15.33 -3.04 -0.05 -26.05 16 15 C -0.06 -1.56 4.29 -12.77 -0.05 -1.61 16 16 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 17 C -0.05 -1.30 7.69 29.37 0.23 -1.07 16 18 C -0.13 -3.15 7.21 -20.06 -0.14 -3.30 16 19 C -0.12 -2.89 6.90 -20.08 -0.14 -3.03 16 20 C -0.09 -1.82 10.06 22.37 0.22 -1.60 16 21 C -0.10 -1.69 10.04 22.22 0.22 -1.46 16 22 C -0.11 -1.91 9.82 22.25 0.22 -1.69 16 23 C -0.03 -0.58 6.33 22.42 0.14 -0.44 16 24 Cl -0.08 -1.65 28.96 -2.72 -0.08 -1.72 16 25 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.41 13.36 8.54 -92.71 -0.79 12.57 16 30 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 2.67 6.99 -2.39 -0.02 2.65 16 32 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -67.52 302.20 2.63 -64.89 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.27 Total: 15.67 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 2.78 Total: -15.44 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.96 Total: -83.39 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.67 Total: 46.04 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.72 kcal Total: -67.52 2.63 -64.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528313119.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.818 kcal (2) G-P(sol) polarization free energy of solvation -67.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds