Wall clock time and date at job start Wed Apr 15 2020 11:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47198 * 2 1 4 4 C 1.50701 * 109.47116 * 239.99642 * 2 1 3 5 5 H 1.07999 * 119.99967 * 240.00392 * 4 2 1 6 6 C 1.37880 * 119.99379 * 60.00021 * 4 2 1 7 7 N 1.31506 * 120.00602 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99437 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47204 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46913 * 120.00063 * 8 6 4 11 11 H 1.48494 * 109.47243 * 239.99877 * 8 6 4 12 12 N 1.46504 * 109.47240 * 119.99950 * 2 1 3 13 13 C 1.34773 * 119.99832 * 275.00104 * 12 2 1 14 14 O 1.21287 * 120.00236 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00136 * 179.97438 * 13 12 2 16 16 H 1.09005 * 113.12658 * 47.62745 * 15 13 12 17 17 C 1.52879 * 113.99370 * 179.97438 * 15 13 12 18 18 C 1.50760 * 89.76572 * 114.10040 * 17 15 13 19 19 C 1.38380 * 90.25081 * 359.96498 * 18 17 15 20 20 C 1.38910 * 119.22375 * 179.97438 * 19 18 17 21 21 C 1.38025 * 120.35426 * 0.02562 * 20 19 18 22 22 C 1.38166 * 120.19089 * 0.02634 * 21 20 19 23 23 C 1.38304 * 149.34988 * 180.02562 * 18 17 15 24 24 Cl 1.73604 * 119.95142 * 359.95901 * 23 18 17 25 25 H 1.09003 * 109.46947 * 300.00198 * 1 2 3 26 26 H 1.08997 * 109.46588 * 59.99822 * 1 2 3 27 27 H 1.08999 * 109.47015 * 180.02562 * 1 2 3 28 28 H 0.97005 * 120.00429 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00194 * 94.99609 * 12 2 1 30 30 H 1.09010 * 113.16461 * 358.87943 * 17 15 13 31 31 H 1.08997 * 113.22723 * 229.33803 * 17 15 13 32 32 H 1.08007 * 119.82026 * 180.29803 * 20 19 18 33 33 H 1.08001 * 119.90334 * 180.02562 * 21 20 19 34 34 H 1.08000 * 120.13581 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1677 -1.5867 -4.8164 11 1 3.1472 -0.1860 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1587 2.4115 15 6 2.6489 -0.7287 3.5877 16 1 3.5425 -1.3250 3.4033 17 6 2.7420 0.1632 4.8259 18 6 1.6565 -0.6493 5.4851 19 6 1.5714 -1.4563 4.3642 20 6 0.6576 -2.5023 4.3494 21 6 -0.1561 -2.7331 5.4402 22 6 -0.0678 -1.9238 6.5565 23 6 0.8405 -0.8806 6.5775 24 17 0.9565 0.1395 7.9775 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7095 1.1617 -3.4844 29 1 2.2491 -1.6317 1.1527 30 1 2.4484 1.1953 4.6340 31 1 3.7021 0.0906 5.3368 32 1 0.5864 -3.1411 3.4814 33 1 -0.8638 -3.5488 5.4211 34 1 -0.7052 -2.1049 7.4094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528313120.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:18 Heat of formation + Delta-G solvation = -7.577823 kcal Electronic energy + Delta-G solvation = -18840.853060 eV Core-core repulsion = 15764.637617 eV Total energy + Delta-G solvation = -3076.215444 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.05932 -40.00617 -37.59487 -36.85929 -36.08031 -34.32795 -31.65492 -30.97735 -28.69688 -27.35831 -26.30853 -23.66429 -22.63890 -21.76482 -20.82957 -19.03076 -17.95675 -17.74765 -17.19444 -16.67232 -16.13864 -16.01801 -15.66644 -15.20321 -14.47540 -14.42388 -14.21843 -14.03228 -13.67417 -13.44260 -12.97957 -12.93110 -12.89005 -12.73376 -12.45611 -12.38030 -12.28749 -12.11113 -11.78243 -11.66510 -11.10446 -10.91982 -10.60873 -9.78704 -9.68947 -9.65382 -8.17398 -6.35046 0.10010 0.19011 1.14741 1.45351 1.46550 1.58428 1.67025 2.31690 2.48968 2.68283 3.06463 3.13436 3.30682 3.44035 4.00464 4.03439 4.25134 4.35323 4.49166 4.58922 4.73306 4.76838 4.84705 4.90565 4.99514 5.08487 5.15834 5.35540 5.42102 5.50171 5.60315 5.67010 5.78425 5.89267 6.08801 6.72894 6.92072 7.31956 7.51347 8.89201 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.035136 B = 0.003765 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.717182 B = 7435.391542 C = 7686.537920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.285 1.285 12 N -0.697 5.697 13 C 0.517 3.483 14 O -0.594 6.594 15 C -0.063 4.063 16 H 0.158 0.842 17 C -0.051 4.051 18 C -0.132 4.132 19 C -0.117 4.117 20 C -0.094 4.094 21 C -0.103 4.103 22 C -0.105 4.105 23 C -0.022 4.022 24 Cl -0.077 7.077 25 H 0.007 0.993 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.142 0.858 33 H 0.169 0.831 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -10.161 17.424 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.182 1.182 10 H -0.205 1.205 11 H -0.211 1.211 12 N -0.345 5.345 13 C 0.303 3.697 14 O -0.476 6.476 15 C -0.083 4.083 16 H 0.175 0.825 17 C -0.088 4.088 18 C -0.133 4.133 19 C -0.118 4.118 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.048 4.048 24 Cl -0.049 7.049 25 H 0.026 0.974 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.103 0.897 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.187 0.813 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.612 -9.139 17.428 19.688 hybrid contribution 0.143 -0.077 -0.909 0.923 sum 0.754 -9.216 16.519 18.931 Atomic orbital electron populations 1.21882 0.98407 0.99442 0.99324 1.18375 0.91047 0.92009 0.81978 0.98310 1.21570 1.32527 1.13574 0.90619 0.90583 1.25809 0.94851 0.95556 1.02382 1.70061 1.37083 1.23986 1.24555 0.85283 0.78068 0.78547 0.78345 1.18158 1.20532 1.21074 1.46222 1.64621 1.14209 1.09448 1.20555 0.77467 0.86719 0.84957 1.90641 1.52939 1.18362 1.85650 1.21363 0.98659 0.96829 0.91482 0.82494 1.21475 0.97657 0.98622 0.91069 1.21612 0.98608 0.99350 0.93696 1.21861 0.98219 0.96549 0.95131 1.21052 0.93908 0.96415 0.99842 1.21314 0.99083 1.00194 0.91527 1.21321 0.97300 0.93213 1.00550 1.20370 0.99865 0.96284 0.88319 1.98355 1.97673 1.68041 1.40782 0.97386 0.91524 0.93963 0.92573 0.75807 0.89702 0.85815 0.84035 0.81333 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.03 16 2 C 0.27 13.86 2.56 44.25 0.11 13.97 16 3 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 4 C -0.54 -28.31 8.73 25.60 0.22 -28.08 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.41 11.32 21.45 0.24 -52.17 16 8 Si 0.97 41.32 29.54 68.60 2.03 43.34 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.70 -28.24 5.07 -446.09 -2.26 -30.50 16 13 C 0.52 20.34 7.36 87.66 0.65 20.98 16 14 O -0.59 -29.24 15.38 -3.05 -0.05 -29.28 16 15 C -0.06 -1.72 4.46 -12.09 -0.05 -1.78 16 16 H 0.16 3.16 8.14 -2.38 -0.02 3.14 16 17 C -0.05 -1.36 7.54 27.49 0.21 -1.15 16 18 C -0.13 -3.51 7.38 -19.80 -0.15 -3.65 16 19 C -0.12 -3.06 6.83 -21.77 -0.15 -3.21 16 20 C -0.09 -2.07 10.04 22.38 0.22 -1.85 16 21 C -0.10 -1.85 10.02 22.20 0.22 -1.62 16 22 C -0.11 -2.02 9.84 22.28 0.22 -1.80 16 23 C -0.02 -0.53 6.32 22.31 0.14 -0.38 16 24 Cl -0.08 -1.74 28.95 -2.72 -0.08 -1.82 16 25 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 27 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.41 13.56 8.54 -92.71 -0.79 12.77 16 30 H 0.08 2.72 7.04 -2.38 -0.02 2.70 16 31 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -68.03 309.24 2.98 -65.05 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.34 Total: 18.79 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 2.76 Total: -13.41 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.02 Total: -82.67 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.05 Total: -29.28 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -68.03 2.98 -65.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528313120.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.473 kcal (2) G-P(sol) polarization free energy of solvation -68.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds