Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31513 * 120.00028 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99858 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47354 * 89.99590 * 8 6 4 10 10 H 1.48501 * 109.46908 * 209.99697 * 8 6 4 11 11 H 1.48506 * 109.47061 * 329.99324 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 H 1.09000 * 112.82465 * 48.88764 * 15 13 12 17 17 C 1.53516 * 113.58956 * 180.02562 * 15 13 12 18 18 C 1.51611 * 87.24862 * 114.59249 * 17 15 13 19 19 C 1.38984 * 92.75371 * 0.02562 * 18 17 15 20 20 C 1.38334 * 119.72981 * 179.97438 * 19 18 17 21 21 C 1.38151 * 120.35190 * 0.02562 * 20 19 18 22 22 C 1.38185 * 119.96874 * 359.97438 * 21 20 19 23 23 C 1.38259 * 119.93885 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 119.84705 * 179.97438 * 23 22 21 25 25 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 28 28 H 0.97003 * 120.00277 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 30 30 H 1.09000 * 113.58851 * 229.18320 * 17 15 13 31 31 H 1.09002 * 113.58479 * 0.02562 * 17 15 13 32 32 H 1.07996 * 119.82863 * 179.97438 * 20 19 18 33 33 H 1.07993 * 120.01293 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.02603 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9069 11 1 0.8473 2.1765 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 1 2.1215 -1.6740 -3.7713 17 6 2.7223 0.1711 -4.8295 18 6 4.2247 -0.0261 -4.7810 19 6 4.1486 -0.8437 -3.6597 20 6 5.3059 -1.3701 -3.1147 21 6 6.5348 -1.0868 -3.6787 22 6 6.6117 -0.2741 -4.7936 23 6 5.4584 0.2549 -5.3428 24 17 5.5578 1.2763 -6.7431 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9027 -0.5285 4.4376 29 1 2.2490 -1.6318 -1.1527 30 1 2.2543 -0.2590 -5.7150 31 1 2.4114 1.1989 -4.6423 32 1 5.2487 -2.0053 -2.2431 33 1 7.4348 -1.5011 -3.2490 34 1 7.5719 -0.0517 -5.2351 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528313121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 17.058512 kcal Electronic energy + Delta-G solvation = -18903.580661 eV Core-core repulsion = 15828.433529 eV Total energy + Delta-G solvation = -3075.147132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91766 -38.67978 -36.62840 -35.50580 -34.76295 -32.42703 -30.72791 -29.98271 -27.73558 -25.42593 -25.05821 -22.48818 -21.42538 -20.35273 -19.49972 -17.62546 -16.94032 -16.20353 -15.92772 -15.45250 -15.06098 -14.67441 -14.23135 -13.70418 -13.42453 -13.14512 -13.08493 -12.83172 -12.45128 -12.22062 -11.95907 -11.72919 -11.54507 -11.50305 -11.26954 -10.87410 -10.84062 -10.75853 -10.21685 -9.79206 -9.42861 -9.26724 -8.78958 -8.73569 -8.66611 -8.21856 -6.23566 -4.26304 1.04775 1.09390 2.06900 3.00167 3.21588 3.33973 3.38256 3.46244 3.84288 4.06735 4.25134 4.29528 4.44289 4.84148 5.11277 5.15244 5.19725 5.29335 5.41827 5.48928 5.63725 5.77992 6.00478 6.03933 6.23927 6.27942 6.34287 6.45016 6.52489 6.67473 6.82140 7.14763 7.23840 7.47858 8.09702 8.47263 8.71732 8.85227 9.37143 10.88553 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.004225 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.759791 B = 6625.495435 C = 7064.930809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.695 5.695 13 C 0.520 3.480 14 O -0.548 6.548 15 C -0.069 4.069 16 H 0.122 0.878 17 C -0.052 4.052 18 C -0.113 4.113 19 C -0.101 4.101 20 C -0.080 4.080 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.011 4.011 24 Cl -0.081 7.081 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.396 0.604 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.609 -1.963 -17.614 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.342 5.342 13 C 0.304 3.696 14 O -0.427 6.427 15 C -0.090 4.090 16 H 0.140 0.860 17 C -0.088 4.088 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.037 4.037 24 Cl -0.053 7.053 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.425 -1.032 -17.529 18.378 hybrid contribution -0.327 0.277 0.266 0.505 sum 5.098 -0.755 -17.263 18.015 Atomic orbital electron populations 1.22450 0.99202 1.00906 0.99383 1.19130 0.90190 0.94695 0.82745 0.93378 1.21019 1.33346 1.14437 0.88503 0.90188 1.24823 0.95472 0.96676 0.95512 1.69864 1.44871 1.40089 0.98058 0.86882 0.80544 0.83620 0.77487 1.20260 1.22123 1.18678 1.46157 1.64599 1.13929 1.09533 1.19834 0.78330 0.87210 0.84265 1.90657 1.51301 1.15773 1.84919 1.21612 0.91268 1.00789 0.95310 0.86016 1.21814 0.88286 1.02456 0.96291 1.22082 0.94973 0.97836 0.96537 1.21757 0.94385 0.97966 0.96069 1.20534 0.90469 0.99221 0.99628 1.20959 0.97566 0.98382 0.95570 1.20920 0.96789 0.98190 0.96924 1.20280 0.93102 0.98459 0.91876 1.98356 1.98681 1.67327 1.40888 0.92753 0.93413 0.94491 0.92259 0.77055 0.88355 0.86833 0.85113 0.84486 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.96 37.16 0.33 -3.21 16 2 C 0.24 5.54 2.15 -69.09 -0.15 5.39 16 3 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 4 C -0.54 -14.24 9.31 -34.44 -0.32 -14.56 16 5 H 0.08 2.23 7.98 -52.48 -0.42 1.81 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.15 13.96 55.43 0.77 -25.37 16 8 Si 0.89 21.62 24.37 -169.99 -4.14 17.47 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 12 N -0.69 -13.39 5.07 -54.94 -0.28 -13.67 16 13 C 0.52 9.51 7.33 -10.98 -0.08 9.43 16 14 O -0.55 -12.05 15.37 5.55 0.09 -11.97 16 15 C -0.07 -0.93 4.33 -92.22 -0.40 -1.33 16 16 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.05 -0.65 7.77 -27.19 -0.21 -0.86 16 18 C -0.11 -1.53 7.26 -103.84 -0.75 -2.28 16 19 C -0.10 -1.38 6.98 -103.88 -0.72 -2.10 16 20 C -0.08 -1.00 10.03 -39.58 -0.40 -1.40 16 21 C -0.11 -1.15 10.04 -39.63 -0.40 -1.55 16 22 C -0.11 -1.21 9.82 -39.59 -0.39 -1.60 16 23 C -0.01 -0.14 6.32 -39.50 -0.25 -0.39 16 24 Cl -0.08 -0.95 28.94 -51.86 -1.50 -2.45 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.40 6.64 8.54 -40.82 -0.35 6.30 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 1.63 7.04 -51.93 -0.37 1.27 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -31.40 302.48 -8.13 -39.53 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -3.79 Total: 4.25 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -3.84 Total: -12.35 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.50 Total: -39.05 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.47 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.40 -8.13 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528313121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.590 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds