Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31513 * 120.00028 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 119.99858 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47354 * 89.99590 * 8 6 4 10 10 H 1.48501 * 109.46908 * 209.99697 * 8 6 4 11 11 H 1.48506 * 109.47061 * 329.99324 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 H 1.09000 * 112.82465 * 48.88764 * 15 13 12 17 17 C 1.53516 * 113.58956 * 180.02562 * 15 13 12 18 18 C 1.51611 * 87.24862 * 114.59249 * 17 15 13 19 19 C 1.38984 * 92.75371 * 0.02562 * 18 17 15 20 20 C 1.38334 * 119.72981 * 179.97438 * 19 18 17 21 21 C 1.38151 * 120.35190 * 0.02562 * 20 19 18 22 22 C 1.38185 * 119.96874 * 359.97438 * 21 20 19 23 23 C 1.38259 * 119.93885 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 119.84705 * 179.97438 * 23 22 21 25 25 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 28 28 H 0.97003 * 120.00277 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 30 30 H 1.09000 * 113.58851 * 229.18320 * 17 15 13 31 31 H 1.09002 * 113.58479 * 0.02562 * 17 15 13 32 32 H 1.07996 * 119.82863 * 179.97438 * 20 19 18 33 33 H 1.07993 * 120.01293 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.02603 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8727 2.6998 10 1 0.9761 1.9950 3.9069 11 1 0.8473 2.1765 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 1 2.1215 -1.6740 -3.7713 17 6 2.7223 0.1711 -4.8295 18 6 4.2247 -0.0261 -4.7810 19 6 4.1486 -0.8437 -3.6597 20 6 5.3059 -1.3701 -3.1147 21 6 6.5348 -1.0868 -3.6787 22 6 6.6117 -0.2741 -4.7936 23 6 5.4584 0.2549 -5.3428 24 17 5.5578 1.2763 -6.7431 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.9027 -0.5285 4.4376 29 1 2.2490 -1.6318 -1.1527 30 1 2.2543 -0.2590 -5.7150 31 1 2.4114 1.1989 -4.6423 32 1 5.2487 -2.0053 -2.2431 33 1 7.4348 -1.5011 -3.2490 34 1 7.5719 -0.0517 -5.2351 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528313121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = -2.674928 kcal Electronic energy + Delta-G solvation = -18904.436367 eV Core-core repulsion = 15828.433529 eV Total energy + Delta-G solvation = -3076.002838 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.00111 -40.06568 -37.58896 -36.96366 -36.05281 -34.40877 -32.00460 -31.40128 -28.74327 -27.23929 -26.36766 -23.72695 -22.61334 -21.78291 -20.91456 -19.16059 -18.09928 -17.79609 -17.43193 -16.71773 -16.27930 -16.01226 -15.62324 -15.21566 -14.92638 -14.37253 -14.26757 -14.14303 -14.01278 -13.82599 -13.23876 -13.12717 -12.96190 -12.77908 -12.47463 -12.39737 -12.14608 -11.79604 -11.73113 -11.62685 -11.28541 -10.93629 -10.86095 -9.91542 -9.70262 -9.65077 -8.38327 -6.43960 0.10903 0.17146 1.14875 1.26914 1.35620 1.44495 1.61313 2.25838 2.33106 2.62346 2.97689 3.05509 3.29443 3.39821 3.92411 4.03200 4.24852 4.34683 4.44784 4.47695 4.57151 4.59159 4.71130 4.76403 4.86192 4.99429 5.01800 5.14857 5.31850 5.35092 5.42623 5.50448 5.62257 5.77997 6.12558 6.57401 6.82682 7.18351 7.39482 8.76776 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.028112 B = 0.004225 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.759791 B = 6625.495435 C = 7064.930809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.241 3.759 3 H 0.019 0.981 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.936 3.064 9 H -0.258 1.258 10 H -0.293 1.293 11 H -0.265 1.265 12 N -0.694 5.694 13 C 0.519 3.481 14 O -0.588 6.588 15 C -0.059 4.059 16 H 0.157 0.843 17 C -0.048 4.048 18 C -0.130 4.130 19 C -0.122 4.122 20 C -0.093 4.093 21 C -0.103 4.103 22 C -0.108 4.108 23 C -0.025 4.025 24 Cl -0.077 7.077 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.270 0.730 29 H 0.409 0.591 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.167 0.833 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 -2.360 -19.078 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.037 0.963 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.764 3.236 9 H -0.184 1.184 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.342 5.342 13 C 0.306 3.694 14 O -0.469 6.469 15 C -0.080 4.080 16 H 0.175 0.825 17 C -0.084 4.084 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.051 4.051 24 Cl -0.048 7.048 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.244 0.756 30 H 0.147 0.853 31 H 0.110 0.890 32 H 0.155 0.845 33 H 0.184 0.816 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.556 -1.456 -19.018 19.866 hybrid contribution -0.241 0.373 0.671 0.804 sum 5.315 -1.083 -18.347 19.132 Atomic orbital electron populations 1.22339 0.97595 1.01882 0.99502 1.18780 0.91368 0.93042 0.83240 0.96301 1.21237 1.32359 1.13585 0.89807 0.92298 1.25516 0.96802 0.99181 0.95387 1.69967 1.46658 1.41868 0.98645 0.86043 0.79973 0.80483 0.77093 1.18371 1.22059 1.18984 1.45989 1.64846 1.14482 1.08875 1.20600 0.77012 0.86793 0.85012 1.90637 1.52827 1.17725 1.85677 1.21578 0.91730 1.01830 0.92814 0.82528 1.21826 0.88309 1.01286 0.97023 1.22236 0.95575 0.98254 0.96978 1.21848 0.94490 0.99137 0.96809 1.20810 0.90851 0.99420 1.00005 1.21334 0.98029 0.97648 0.95115 1.21283 0.97354 0.97311 0.96671 1.20514 0.93429 0.98867 0.92328 1.98354 1.98665 1.67225 1.40594 0.91338 0.94188 0.93396 0.92056 0.75577 0.85260 0.88979 0.84497 0.81578 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.59 8.96 71.98 0.64 -5.95 16 2 C 0.24 11.24 2.15 44.24 0.10 11.34 16 3 H 0.02 1.01 6.64 -2.39 -0.02 0.99 16 4 C -0.53 -28.48 9.31 25.60 0.24 -28.25 16 5 H 0.06 3.33 7.98 -2.91 -0.02 3.31 16 6 C 0.03 1.73 5.45 84.66 0.46 2.19 16 7 N -0.93 -55.24 13.96 21.45 0.30 -54.94 16 8 Si 0.94 44.42 24.37 68.60 1.67 46.09 16 9 H -0.26 -11.44 6.87 99.48 0.68 -10.76 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.26 -12.60 6.53 99.48 0.65 -11.95 16 12 N -0.69 -26.28 5.07 -446.11 -2.26 -28.54 16 13 C 0.52 18.63 7.33 87.66 0.64 19.28 16 14 O -0.59 -25.89 15.37 -3.04 -0.05 -25.94 16 15 C -0.06 -1.49 4.33 -11.83 -0.05 -1.54 16 16 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 17 C -0.05 -1.14 7.77 30.30 0.24 -0.90 16 18 C -0.13 -3.31 7.26 -19.36 -0.14 -3.45 16 19 C -0.12 -3.15 6.98 -19.38 -0.14 -3.28 16 20 C -0.09 -2.15 10.03 22.27 0.22 -1.93 16 21 C -0.10 -1.97 10.04 22.24 0.22 -1.75 16 22 C -0.11 -2.12 9.82 22.26 0.22 -1.90 16 23 C -0.02 -0.59 6.32 22.32 0.14 -0.45 16 24 Cl -0.08 -1.68 28.94 -2.72 -0.08 -1.76 16 25 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.41 13.33 8.54 -92.71 -0.79 12.54 16 30 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.09 2.63 7.04 -2.39 -0.02 2.61 16 32 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -67.89 302.48 2.65 -65.24 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.27 Total: 16.43 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 2.80 Total: -16.59 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.96 Total: -83.48 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -67.89 2.65 -65.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528313121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.569 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds