Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46499 * 2 1 4 4 C 1.50694 * 109.47104 * 240.00239 * 2 1 3 5 5 H 1.08004 * 120.00037 * 239.99585 * 4 2 1 6 6 C 1.37874 * 120.00338 * 59.99740 * 4 2 1 7 7 N 1.31518 * 120.00117 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00302 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46927 * 59.99734 * 8 6 4 10 10 H 1.48503 * 109.47183 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47126 * 299.99998 * 8 6 4 12 12 N 1.46492 * 109.47369 * 119.99688 * 2 1 3 13 13 C 1.34776 * 120.00417 * 275.00378 * 12 2 1 14 14 O 1.21283 * 119.99805 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00363 * 179.97438 * 13 12 2 16 16 H 1.09007 * 112.88582 * 308.33204 * 15 13 12 17 17 C 1.52257 * 113.74945 * 177.24212 * 15 13 12 18 18 C 1.50550 * 87.23986 * 245.54760 * 17 15 13 19 19 C 1.37753 * 92.76345 * 359.82294 * 18 17 15 20 20 C 1.38775 * 119.93423 * 180.20306 * 19 18 17 21 21 C 1.38114 * 120.11927 * 0.02562 * 20 19 18 22 22 C 1.38166 * 119.99922 * 359.97438 * 21 20 19 23 23 C 1.38223 * 119.96681 * 0.02562 * 22 21 20 24 24 Cl 1.73604 * 119.97012 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47527 * 60.00061 * 1 2 3 26 26 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47671 * 299.99732 * 1 2 3 28 28 H 0.96993 * 120.00382 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00215 * 95.00223 * 12 2 1 30 30 H 1.09002 * 113.49283 * 130.97017 * 17 15 13 31 31 H 1.09000 * 113.68733 * 0.15340 * 17 15 13 32 32 H 1.08003 * 119.93616 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.99763 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.01895 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8281 -2.5197 -4.0081 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0183 -0.6905 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1585 2.4117 15 6 2.6489 -0.7287 3.5877 16 1 2.1011 -1.6469 3.8001 17 6 2.8019 0.1792 4.8004 18 6 4.2833 -0.0740 4.7120 19 6 4.1445 -0.8988 3.6174 20 6 5.2649 -1.4845 3.0452 21 6 6.5187 -1.2424 3.5715 22 6 6.6592 -0.4154 4.6693 23 6 5.5444 0.1690 5.2407 24 17 5.7209 1.2087 6.6197 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7088 1.1614 -3.4844 29 1 2.2491 -1.6317 1.1526 30 1 2.3439 -0.2223 5.7043 31 1 2.5244 1.2158 4.6091 32 1 5.1561 -2.1315 2.1873 33 1 7.3894 -1.6990 3.1244 34 1 7.6394 -0.2262 5.0814 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528313122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 10.256601 kcal Electronic energy + Delta-G solvation = -18867.155132 eV Core-core repulsion = 15791.713047 eV Total energy + Delta-G solvation = -3075.442085 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.04033 -38.50990 -36.60624 -35.45080 -34.63696 -32.40705 -30.61878 -29.16087 -27.61868 -25.34482 -25.06720 -22.41637 -21.36835 -20.27011 -19.30144 -17.53286 -16.90353 -16.03039 -15.75310 -15.24307 -15.02878 -14.56617 -14.00660 -13.81052 -13.39623 -13.07410 -12.88986 -12.45379 -12.31500 -11.89368 -11.66866 -11.51238 -11.42899 -11.11514 -10.97864 -10.84901 -10.77943 -10.69732 -10.35776 -10.25539 -9.39792 -9.08256 -8.68670 -8.63066 -8.54966 -7.96168 -6.14107 -4.23752 1.06886 1.13536 2.10021 3.17039 3.24008 3.29518 3.30369 3.51066 3.98148 4.17726 4.30948 4.37251 4.55451 4.85542 5.18084 5.20859 5.23196 5.40077 5.51059 5.54972 5.67532 5.84965 6.02689 6.12184 6.25709 6.49938 6.71013 6.79997 6.93733 7.12058 7.41519 7.52169 7.66405 7.88599 8.12508 8.61108 8.74311 9.05742 9.43660 10.91860 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.004178 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.716472 B = 6699.892370 C = 7339.292729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.518 3.482 14 O -0.547 6.547 15 C -0.071 4.071 16 H 0.120 0.880 17 C -0.055 4.055 18 C -0.111 4.111 19 C -0.100 4.100 20 C -0.081 4.081 21 C -0.108 4.108 22 C -0.110 4.110 23 C -0.011 4.011 24 Cl -0.080 7.080 25 H 0.090 0.910 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 -5.745 14.526 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.301 3.699 14 O -0.426 6.426 15 C -0.092 4.092 16 H 0.138 0.862 17 C -0.092 4.092 18 C -0.112 4.112 19 C -0.101 4.101 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.129 4.129 23 C -0.037 4.037 24 Cl -0.051 7.051 25 H 0.109 0.891 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.154 0.846 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.993 -4.668 14.490 17.195 hybrid contribution 0.568 -0.897 -0.833 1.350 sum 8.561 -5.565 13.657 17.053 Atomic orbital electron populations 1.22079 0.98363 0.99150 1.00969 1.18767 0.91075 0.94000 0.79921 0.93370 1.21160 1.32575 1.13253 0.90305 0.92140 1.24882 0.94786 0.94933 0.99039 1.69889 1.35766 1.22371 1.24027 0.86509 0.79168 0.79585 0.81833 1.20147 1.21105 1.20181 1.46487 1.64493 1.13568 1.10362 1.19762 0.78615 0.87243 0.84236 1.90660 1.51367 1.15786 1.84748 1.21256 0.91595 1.00556 0.95786 0.86193 1.21434 0.88260 1.02672 0.96819 1.21710 0.94675 0.98007 0.96838 1.21428 0.94740 0.97701 0.96190 1.20628 0.90683 0.99139 0.99447 1.20927 0.97167 0.98603 0.95948 1.20892 0.97246 0.97848 0.96867 1.20398 0.93003 0.98040 0.92304 1.98355 1.98030 1.66229 1.42529 0.89105 0.95425 0.96609 0.92485 0.77859 0.88435 0.86772 0.85204 0.84592 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.65 2.56 -69.09 -0.18 6.47 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.72 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.70 -14.30 5.07 -54.94 -0.28 -14.58 16 13 C 0.52 10.12 7.32 -10.99 -0.08 10.04 16 14 O -0.55 -12.90 15.37 5.55 0.09 -12.81 16 15 C -0.07 -1.01 4.27 -93.66 -0.40 -1.41 16 16 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 17 C -0.05 -0.74 7.69 -28.63 -0.22 -0.96 16 18 C -0.11 -1.56 7.21 -104.92 -0.76 -2.32 16 19 C -0.10 -1.41 6.90 -104.96 -0.72 -2.13 16 20 C -0.08 -1.02 10.06 -39.43 -0.40 -1.42 16 21 C -0.11 -1.19 10.04 -39.65 -0.40 -1.58 16 22 C -0.11 -1.24 9.82 -39.61 -0.39 -1.63 16 23 C -0.01 -0.14 6.33 -39.35 -0.25 -0.39 16 24 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.47 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.11 1.76 7.04 -51.93 -0.37 1.39 16 32 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -30.52 309.09 -9.20 -39.72 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.92 Total: 5.38 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.84 Total: -11.19 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.35 Total: -38.67 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.52 -9.20 -39.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528313122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.972 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds