Wall clock time and date at job start Wed Apr 15 2020 11:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46499 * 2 1 4 4 C 1.50694 * 109.47104 * 240.00239 * 2 1 3 5 5 H 1.08004 * 120.00037 * 239.99585 * 4 2 1 6 6 C 1.37874 * 120.00338 * 59.99740 * 4 2 1 7 7 N 1.31518 * 120.00117 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00302 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46927 * 59.99734 * 8 6 4 10 10 H 1.48503 * 109.47183 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47126 * 299.99998 * 8 6 4 12 12 N 1.46492 * 109.47369 * 119.99688 * 2 1 3 13 13 C 1.34776 * 120.00417 * 275.00378 * 12 2 1 14 14 O 1.21283 * 119.99805 * 0.02562 * 13 12 2 15 15 C 1.50698 * 120.00363 * 179.97438 * 13 12 2 16 16 H 1.09007 * 112.88582 * 308.33204 * 15 13 12 17 17 C 1.52257 * 113.74945 * 177.24212 * 15 13 12 18 18 C 1.50550 * 87.23986 * 245.54760 * 17 15 13 19 19 C 1.37753 * 92.76345 * 359.82294 * 18 17 15 20 20 C 1.38775 * 119.93423 * 180.20306 * 19 18 17 21 21 C 1.38114 * 120.11927 * 0.02562 * 20 19 18 22 22 C 1.38166 * 119.99922 * 359.97438 * 21 20 19 23 23 C 1.38223 * 119.96681 * 0.02562 * 22 21 20 24 24 Cl 1.73604 * 119.97012 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47527 * 60.00061 * 1 2 3 26 26 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47671 * 299.99732 * 1 2 3 28 28 H 0.96993 * 120.00382 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00215 * 95.00223 * 12 2 1 30 30 H 1.09002 * 113.49283 * 130.97017 * 17 15 13 31 31 H 1.09000 * 113.68733 * 0.15340 * 17 15 13 32 32 H 1.08003 * 119.93616 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.99763 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.01895 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8281 -2.5197 -4.0081 10 1 1.8268 -0.4198 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0183 -0.6905 1.1961 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1585 2.4117 15 6 2.6489 -0.7287 3.5877 16 1 2.1011 -1.6469 3.8001 17 6 2.8019 0.1792 4.8004 18 6 4.2833 -0.0740 4.7120 19 6 4.1445 -0.8988 3.6174 20 6 5.2649 -1.4845 3.0452 21 6 6.5187 -1.2424 3.5715 22 6 6.6592 -0.4154 4.6693 23 6 5.5444 0.1690 5.2407 24 17 5.7209 1.2087 6.6197 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.7088 1.1614 -3.4844 29 1 2.2491 -1.6317 1.1526 30 1 2.3439 -0.2223 5.7043 31 1 2.5244 1.2158 4.6091 32 1 5.1561 -2.1315 2.1873 33 1 7.3894 -1.6990 3.1244 34 1 7.6394 -0.2262 5.0814 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528313122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:22 Heat of formation + Delta-G solvation = -7.562891 kcal Electronic energy + Delta-G solvation = -18867.927843 eV Core-core repulsion = 15791.713047 eV Total energy + Delta-G solvation = -3076.214796 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.15930 -39.99733 -37.59914 -36.86359 -36.11908 -34.32267 -31.64487 -30.93946 -28.69571 -27.34411 -26.31698 -23.68977 -22.63318 -21.75453 -20.81096 -19.03742 -18.00430 -17.66572 -17.21867 -16.68842 -16.26545 -15.96493 -15.47037 -15.32357 -14.47431 -14.29622 -14.25960 -14.02906 -13.72515 -13.39505 -12.97473 -12.94745 -12.83973 -12.72340 -12.45540 -12.39802 -12.25892 -12.15135 -11.80615 -11.72086 -11.11993 -10.90482 -10.58687 -9.78751 -9.68946 -9.63492 -8.16774 -6.34574 0.10943 0.18744 1.15426 1.45873 1.47826 1.55631 1.69280 2.32448 2.49533 2.68843 3.09282 3.14351 3.32287 3.43786 4.00410 4.03870 4.26030 4.35229 4.48968 4.59177 4.75014 4.77652 4.86543 4.92816 5.01725 5.09562 5.15292 5.35202 5.42906 5.52624 5.60332 5.68773 5.79276 5.90098 6.09997 6.72644 6.92536 7.32197 7.51818 8.89374 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.004178 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.716472 B = 6699.892370 C = 7339.292729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.697 5.697 13 C 0.515 3.485 14 O -0.595 6.595 15 C -0.059 4.059 16 H 0.156 0.844 17 C -0.053 4.053 18 C -0.129 4.129 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.103 4.103 22 C -0.107 4.107 23 C -0.026 4.026 24 Cl -0.077 7.077 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.013 0.987 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.169 0.831 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.972 -8.086 14.882 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.345 5.345 13 C 0.301 3.699 14 O -0.476 6.476 15 C -0.080 4.080 16 H 0.173 0.827 17 C -0.090 4.090 18 C -0.130 4.130 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.053 4.053 24 Cl -0.048 7.048 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.241 0.759 30 H 0.146 0.854 31 H 0.106 0.894 32 H 0.160 0.840 33 H 0.187 0.813 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.704 -7.051 14.876 19.110 hybrid contribution 0.097 -0.119 -0.890 0.903 sum 9.801 -7.170 13.987 18.523 Atomic orbital electron populations 1.21898 0.98139 0.99612 0.99614 1.18357 0.91230 0.91806 0.81965 0.98689 1.21503 1.32646 1.13600 0.90685 0.90691 1.25803 0.94849 0.95546 1.02347 1.70050 1.37010 1.23947 1.24658 0.85398 0.78648 0.78759 0.77537 1.18713 1.21347 1.19555 1.46221 1.64561 1.14247 1.09492 1.20640 0.77223 0.86789 0.85237 1.90638 1.53152 1.18166 1.85663 1.21171 0.92487 1.01405 0.92954 0.82677 1.21431 0.88728 1.01194 0.97677 1.21810 0.95122 0.98583 0.97487 1.21463 0.94582 0.99030 0.97005 1.20944 0.90882 0.99190 0.99830 1.21340 0.97612 0.97775 0.95341 1.21280 0.97824 0.96893 0.96566 1.20637 0.93264 0.98558 0.92811 1.98352 1.97990 1.66184 1.42311 0.91555 0.93836 0.96828 0.92577 0.75868 0.85404 0.89398 0.83986 0.81325 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.27 13.91 2.56 44.24 0.11 14.02 16 3 H 0.00 -0.30 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -28.47 8.73 25.60 0.22 -28.25 16 5 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -52.53 11.32 21.45 0.24 -52.29 16 8 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 12 N -0.70 -28.34 5.07 -446.13 -2.26 -30.60 16 13 C 0.51 20.29 7.32 87.66 0.64 20.93 16 14 O -0.59 -29.22 15.37 -3.04 -0.05 -29.26 16 15 C -0.06 -1.64 4.27 -12.77 -0.05 -1.69 16 16 H 0.16 3.10 8.14 -2.38 -0.02 3.08 16 17 C -0.05 -1.41 7.69 29.37 0.23 -1.18 16 18 C -0.13 -3.48 7.21 -20.06 -0.14 -3.62 16 19 C -0.12 -3.20 6.90 -20.08 -0.14 -3.34 16 20 C -0.09 -2.06 10.06 22.37 0.22 -1.84 16 21 C -0.10 -1.92 10.04 22.22 0.22 -1.70 16 22 C -0.11 -2.13 9.82 22.25 0.22 -1.91 16 23 C -0.03 -0.64 6.33 22.42 0.14 -0.50 16 24 Cl -0.08 -1.76 28.96 -2.72 -0.08 -1.84 16 25 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 26 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.41 13.63 8.54 -92.71 -0.79 12.84 16 30 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.09 2.80 7.04 -2.39 -0.02 2.78 16 32 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -68.08 309.09 3.01 -65.07 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.34 Total: 19.45 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 2.79 Total: -13.91 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -2.02 Total: -82.89 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.05 Total: -29.26 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.08 Total: -1.84 kcal Total: -68.08 3.01 -65.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528313122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.509 kcal (2) G-P(sol) polarization free energy of solvation -68.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds