Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46916 * 2 1 4 4 C 1.50699 * 109.47047 * 240.00438 * 2 1 3 5 5 H 1.07998 * 119.99982 * 240.00366 * 4 2 1 6 6 C 1.37879 * 119.99862 * 59.99371 * 4 2 1 7 7 N 1.31515 * 120.00061 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99754 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47100 * 120.00461 * 8 6 4 11 11 H 1.48497 * 109.47556 * 240.00381 * 8 6 4 12 12 N 1.46901 * 109.47404 * 120.00119 * 2 1 3 13 13 C 1.46893 * 111.00011 * 275.00099 * 12 2 1 14 14 C 1.50703 * 109.47319 * 180.02562 * 13 12 2 15 15 O 1.21292 * 119.99475 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00307 * 180.02562 * 14 13 12 17 17 C 1.38803 * 119.99655 * 179.97438 * 16 14 13 18 18 S 1.70437 * 124.64925 * 359.97104 * 17 16 14 19 19 C 1.75469 * 92.52180 * 180.02562 * 18 17 16 20 20 C 1.32621 * 110.77794 * 0.02562 * 19 18 17 21 21 C 1.36985 * 124.64042 * 179.97438 * 17 16 14 22 22 C 1.43200 * 123.58509 * 359.97438 * 21 17 16 23 23 N 8.11822 * 99.56905 * 72.14701 * 2 1 3 24 24 H 1.09004 * 109.47655 * 59.99413 * 1 2 3 25 25 H 1.08997 * 109.47629 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46951 * 300.00049 * 1 2 3 27 27 H 0.97003 * 119.99523 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00096 * 151.04389 * 12 2 1 29 29 H 1.09004 * 109.47474 * 59.99693 * 13 12 2 30 30 H 1.09006 * 109.47187 * 299.99808 * 13 12 2 31 31 H 0.96999 * 119.99728 * 359.97438 * 16 14 13 32 32 H 1.08000 * 124.61111 * 179.73646 * 19 18 17 33 33 H 1.07999 * 123.42345 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9433 0.8303 -2.6033 8 14 2.3223 -1.1193 -4.0080 9 1 3.1473 -2.2860 -3.6039 10 1 1.1676 -1.5863 -4.8166 11 1 3.1470 -0.1855 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 6 2.5886 -0.5216 3.5557 15 8 2.8690 -1.6985 3.4698 16 7 2.7288 0.1204 4.7323 17 6 3.1945 -0.5652 5.8458 18 16 3.6221 -2.2150 5.8591 19 6 4.0517 -2.1697 7.5598 20 6 3.8683 -0.9548 8.0591 21 6 3.3732 -0.0084 7.0845 22 6 3.0982 1.3649 7.3830 23 7 2.8795 2.4542 7.6198 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7092 1.1619 -3.4843 28 1 2.9173 -1.1205 1.0287 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0462 2.1182 31 1 2.5042 1.0616 4.8010 32 1 4.4116 -3.0171 8.1243 33 1 4.0690 -0.6984 9.0889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = 29.084360 kcal Electronic energy + Delta-G solvation = -18242.891295 eV Core-core repulsion = 15202.602101 eV Total energy + Delta-G solvation = -3040.289195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47141 -38.31813 -36.10691 -35.82491 -34.81903 -32.66291 -29.96812 -28.80524 -26.18398 -25.22394 -24.29986 -21.76379 -20.89801 -19.94066 -19.07704 -17.92695 -16.69990 -16.09706 -15.96755 -15.40907 -14.89433 -14.59323 -14.45129 -14.20236 -13.68250 -13.52032 -13.35771 -12.87674 -12.75371 -12.59550 -12.12595 -12.02803 -11.47494 -11.18068 -11.11804 -10.97825 -10.81889 -10.47305 -10.24487 -10.15098 -9.82789 -8.94792 -8.62211 -8.57110 -8.34775 -7.51818 -6.11835 -4.18425 0.52760 1.06323 1.77871 1.80080 2.41531 2.53504 2.61404 3.24867 3.32727 3.33226 3.37887 3.92979 4.33911 4.65425 4.73846 4.97366 5.10296 5.22126 5.45782 5.55945 5.61331 5.68971 5.92704 5.99012 6.68363 6.78004 6.98305 7.06770 7.30926 7.37066 7.67712 7.71142 7.77755 8.13667 8.18994 8.47954 8.90318 9.48175 10.94676 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.031354 B = 0.003444 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.813382 B = 8128.118634 C = 8755.601767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.212 3.788 3 H 0.004 0.996 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.671 5.671 13 C 0.048 3.952 14 C 0.507 3.493 15 O -0.479 6.479 16 N -0.640 5.640 17 C 0.073 3.927 18 S 0.326 5.674 19 C -0.292 4.292 20 C -0.071 4.071 21 C -0.140 4.140 22 C 0.279 3.721 23 N -0.432 5.432 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.003 0.997 27 H 0.262 0.738 28 H 0.343 0.657 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.419 0.581 32 H 0.170 0.830 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -3.716 18.154 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.305 5.305 13 C -0.084 4.084 14 C 0.296 3.704 15 O -0.351 6.351 16 N -0.284 5.284 17 C -0.149 4.149 18 S 0.587 5.413 19 C -0.428 4.428 20 C -0.101 4.101 21 C -0.162 4.162 22 C -0.037 4.037 23 N -0.109 5.109 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.162 0.838 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.257 0.743 32 H 0.187 0.813 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.478 -4.135 17.274 18.318 hybrid contribution 0.927 1.549 0.112 1.809 sum 5.405 -2.586 17.387 18.390 Atomic orbital electron populations 1.21752 0.97586 0.99700 0.99473 1.19191 0.92828 0.92381 0.85056 0.97802 1.21255 1.31698 1.12729 0.90152 0.91863 1.24914 0.94929 0.94969 0.99142 1.69897 1.36531 1.22837 1.23571 0.86424 0.78659 0.79635 0.82614 1.19619 1.20906 1.21063 1.60586 1.33528 1.31460 1.04888 1.21817 1.01874 0.95029 0.89727 1.21810 0.76687 0.88133 0.83814 1.90618 1.46623 1.15451 1.82394 1.43281 1.63243 1.14616 1.07250 1.22232 1.01479 1.01508 0.89714 1.84588 1.58147 0.96719 1.01876 1.25993 1.12282 1.01866 1.02634 1.20581 0.99535 0.90864 0.99098 1.15981 1.19131 0.88416 0.92635 1.24954 0.92917 0.91793 0.93995 1.81288 1.10896 1.11584 1.07157 0.89824 0.94636 0.97763 0.92857 0.83818 0.87886 0.92244 0.74338 0.81251 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.19 37.16 0.34 -2.65 16 2 C 0.21 5.06 2.60 -68.87 -0.18 4.88 16 3 H 0.00 0.11 7.80 -51.93 -0.40 -0.29 16 4 C -0.52 -13.75 8.59 -34.44 -0.30 -14.05 16 5 H 0.06 1.67 7.62 -52.49 -0.40 1.27 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.55 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.67 -13.49 5.93 -109.22 -0.65 -14.14 16 13 C 0.05 0.75 5.96 -4.98 -0.03 0.72 16 14 C 0.51 7.11 7.83 -10.99 -0.09 7.02 16 15 O -0.48 -7.80 13.63 5.55 0.08 -7.72 16 16 N -0.64 -7.24 5.37 -11.61 -0.06 -7.30 16 17 C 0.07 0.81 6.98 -14.85 -0.10 0.71 16 18 S 0.33 3.32 19.96 -107.50 -2.15 1.17 16 19 C -0.29 -2.22 11.10 28.83 0.32 -1.90 16 20 C -0.07 -0.58 10.35 -38.98 -0.40 -0.98 16 21 C -0.14 -1.44 5.88 -105.92 -0.62 -2.07 16 22 C 0.28 3.26 14.98 -22.47 -0.34 2.92 16 23 N -0.43 -5.86 18.54 41.84 0.78 -5.09 16 24 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.34 6.98 7.92 -39.29 -0.31 6.67 16 29 H 0.10 1.49 7.44 -51.93 -0.39 1.11 16 30 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 31 H 0.42 3.98 8.15 -40.82 -0.33 3.65 16 32 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -29.70 307.44 -6.61 -36.31 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.36 Total: 4.17 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.49 Total: -3.82 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.69 Total: -50.45 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.08 Total: -7.72 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.15 Total: 1.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.70 -6.61 -36.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.394 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds