Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46916 * 2 1 4 4 C 1.50699 * 109.47047 * 240.00438 * 2 1 3 5 5 H 1.07998 * 119.99982 * 240.00366 * 4 2 1 6 6 C 1.37879 * 119.99862 * 59.99371 * 4 2 1 7 7 N 1.31515 * 120.00061 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99754 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47107 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47100 * 120.00461 * 8 6 4 11 11 H 1.48497 * 109.47556 * 240.00381 * 8 6 4 12 12 N 1.46901 * 109.47404 * 120.00119 * 2 1 3 13 13 C 1.46893 * 111.00011 * 275.00099 * 12 2 1 14 14 C 1.50703 * 109.47319 * 180.02562 * 13 12 2 15 15 O 1.21292 * 119.99475 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00307 * 180.02562 * 14 13 12 17 17 C 1.38803 * 119.99655 * 179.97438 * 16 14 13 18 18 S 1.70437 * 124.64925 * 359.97104 * 17 16 14 19 19 C 1.75469 * 92.52180 * 180.02562 * 18 17 16 20 20 C 1.32621 * 110.77794 * 0.02562 * 19 18 17 21 21 C 1.36985 * 124.64042 * 179.97438 * 17 16 14 22 22 C 1.43200 * 123.58509 * 359.97438 * 21 17 16 23 23 N 8.11822 * 99.56905 * 72.14701 * 2 1 3 24 24 H 1.09004 * 109.47655 * 59.99413 * 1 2 3 25 25 H 1.08997 * 109.47629 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46951 * 300.00049 * 1 2 3 27 27 H 0.97003 * 119.99523 * 179.97438 * 7 6 4 28 28 H 1.00900 * 111.00096 * 151.04389 * 12 2 1 29 29 H 1.09004 * 109.47474 * 59.99693 * 13 12 2 30 30 H 1.09006 * 109.47187 * 299.99808 * 13 12 2 31 31 H 0.96999 * 119.99728 * 359.97438 * 16 14 13 32 32 H 1.08000 * 124.61111 * 179.73646 * 19 18 17 33 33 H 1.07999 * 123.42345 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9433 0.8303 -2.6033 8 14 2.3223 -1.1193 -4.0080 9 1 3.1473 -2.2860 -3.6039 10 1 1.1676 -1.5863 -4.8166 11 1 3.1470 -0.1855 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 6 2.5886 -0.5216 3.5557 15 8 2.8690 -1.6985 3.4698 16 7 2.7288 0.1204 4.7323 17 6 3.1945 -0.5652 5.8458 18 16 3.6221 -2.2150 5.8591 19 6 4.0517 -2.1697 7.5598 20 6 3.8683 -0.9548 8.0591 21 6 3.3732 -0.0084 7.0845 22 6 3.0982 1.3649 7.3830 23 7 2.8795 2.4542 7.6198 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7092 1.1619 -3.4843 28 1 2.9173 -1.1205 1.0287 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0462 2.1182 31 1 2.5042 1.0616 4.8010 32 1 4.4116 -3.0171 8.1243 33 1 4.0690 -0.6984 9.0889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869941.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = 8.929734 kcal Electronic energy + Delta-G solvation = -18243.765266 eV Core-core repulsion = 15202.602101 eV Total energy + Delta-G solvation = -3041.163165 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52316 -39.21453 -37.56614 -36.99170 -35.75787 -34.51789 -31.38723 -29.97557 -27.66256 -26.95909 -25.37571 -22.73574 -21.90399 -21.57971 -20.00583 -19.13113 -18.30738 -17.26185 -17.07213 -16.63388 -16.39108 -15.78299 -15.49627 -15.16525 -15.14615 -14.83111 -14.47145 -14.26208 -13.79518 -13.72125 -13.41871 -13.18666 -12.94270 -12.84807 -12.66942 -12.36187 -12.19971 -12.10026 -11.97326 -11.90212 -10.95460 -10.82353 -10.57442 -9.40020 -9.20638 -9.11475 -8.14498 -6.27494 -0.32824 0.28179 1.05762 1.08447 1.35010 1.42170 1.45111 1.55992 1.62174 1.65898 2.42574 2.44646 3.05167 3.15142 3.53172 3.63685 3.98557 4.30351 4.31292 4.38925 4.78421 4.82755 4.93685 5.07406 5.18107 5.22322 5.31236 5.42547 5.65167 5.80695 5.88478 6.22036 6.38164 6.45300 6.63798 6.73515 6.94114 7.42825 8.91188 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.031354 B = 0.003444 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.813382 B = 8128.118634 C = 8755.601767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.217 3.783 3 H -0.016 1.016 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.676 5.676 13 C 0.047 3.953 14 C 0.516 3.484 15 O -0.505 6.505 16 N -0.630 5.630 17 C 0.052 3.948 18 S 0.300 5.700 19 C -0.266 4.266 20 C -0.076 4.076 21 C -0.134 4.134 22 C 0.296 3.704 23 N -0.467 5.467 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.263 0.737 28 H 0.340 0.660 29 H 0.114 0.886 30 H 0.074 0.926 31 H 0.427 0.573 32 H 0.202 0.798 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 -4.486 19.696 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.109 3.891 3 H 0.002 0.998 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.309 5.309 13 C -0.085 4.085 14 C 0.304 3.696 15 O -0.379 6.379 16 N -0.274 5.274 17 C -0.169 4.169 18 S 0.561 5.439 19 C -0.401 4.401 20 C -0.105 4.105 21 C -0.156 4.156 22 C -0.019 4.019 23 N -0.145 5.145 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.158 0.842 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.266 0.734 32 H 0.219 0.781 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.250 -4.896 18.857 20.178 hybrid contribution 0.721 1.776 -0.226 1.930 sum 5.971 -3.120 18.631 19.812 Atomic orbital electron populations 1.21585 0.97470 0.98986 0.99485 1.18972 0.92876 0.91236 0.85991 0.99808 1.21588 1.31739 1.12754 0.91582 0.92411 1.25659 0.95141 0.95654 1.01864 1.70006 1.37352 1.23902 1.24182 0.85475 0.78114 0.78638 0.79207 1.19242 1.20696 1.20578 1.60414 1.33441 1.32267 1.04761 1.21837 1.03125 0.94731 0.88846 1.21320 0.76568 0.87574 0.84107 1.90624 1.47948 1.16332 1.83041 1.42951 1.62876 1.14867 1.06729 1.22348 1.02933 1.01963 0.89682 1.84724 1.58241 0.96507 1.04385 1.26248 1.10507 1.02650 1.00708 1.20860 0.99342 0.90383 0.99885 1.16212 1.18591 0.87960 0.92885 1.25109 0.91980 0.91820 0.92966 1.81309 1.12121 1.12627 1.08407 0.92269 0.95542 0.95244 0.92783 0.84208 0.86813 0.90836 0.73409 0.78073 0.80916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 9.19 71.98 0.66 -4.87 16 2 C 0.22 10.45 2.60 44.17 0.11 10.56 16 3 H -0.02 -0.80 7.80 -2.39 -0.02 -0.82 16 4 C -0.54 -28.75 8.59 25.60 0.22 -28.53 16 5 H 0.06 3.07 7.62 -2.91 -0.02 3.05 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -51.00 11.32 21.45 0.24 -50.76 16 8 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.68 -27.18 5.93 -499.46 -2.96 -30.14 16 13 C 0.05 1.42 5.96 85.56 0.51 1.93 16 14 C 0.52 14.11 7.83 87.66 0.69 14.79 16 15 O -0.51 -16.28 13.63 -3.07 -0.04 -16.32 16 16 N -0.63 -13.59 5.37 -309.03 -1.66 -15.25 16 17 C 0.05 1.08 6.98 83.29 0.58 1.66 16 18 S 0.30 5.63 19.96 -56.49 -1.13 4.50 16 19 C -0.27 -3.15 11.10 66.66 0.74 -2.41 16 20 C -0.08 -0.99 10.35 22.73 0.24 -0.76 16 21 C -0.13 -2.49 5.88 -20.71 -0.12 -2.61 16 22 C 0.30 6.47 14.98 88.33 1.32 7.79 16 23 N -0.47 -12.20 18.54 19.00 0.35 -11.85 16 24 H 0.06 3.10 6.07 -2.38 -0.01 3.08 16 25 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 27 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.34 13.95 7.92 -89.69 -0.71 13.24 16 29 H 0.11 3.16 7.44 -2.38 -0.02 3.15 16 30 H 0.07 2.04 8.06 -2.38 -0.02 2.02 16 31 H 0.43 7.65 8.15 -92.71 -0.76 6.89 16 32 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -63.58 307.44 1.94 -61.64 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -0.29 Total: 14.61 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.40 Total: -1.11 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.02 Total: -107.99 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.04 Total: -16.32 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.13 Total: 4.50 kcal Total: -63.58 1.94 -61.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869941.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.571 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds