Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 N 1.30042 * 126.17715 * 90.02488 * 14 13 12 16 16 O 1.21287 * 110.53527 * 179.97438 * 15 14 13 17 17 C 1.34260 * 109.68695 * 359.97438 * 16 15 14 18 18 C 1.47415 * 126.69811 * 179.97438 * 17 16 15 19 19 C 1.44345 * 123.32861 * 359.75658 * 18 17 16 20 20 C 1.32923 * 112.98803 * 179.76733 * 19 18 17 21 21 S 1.75551 * 110.34616 * 0.48165 * 20 19 18 22 22 C 1.34830 * 123.32949 * 180.02562 * 18 17 16 23 23 N 1.32335 * 106.60605 * 359.77246 * 17 16 15 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 29 29 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 30 30 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 31 31 H 1.08002 * 123.50368 * 359.96021 * 19 18 17 32 32 H 1.07996 * 124.83004 * 180.22770 * 20 19 18 33 33 H 1.07996 * 124.51906 * 359.95495 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 7 1.8585 -1.1536 -4.4281 16 8 2.5570 -1.6513 -5.2856 17 6 3.8467 -1.3748 -5.0354 18 6 5.0097 -1.7960 -5.8373 19 6 4.9000 -2.5936 -7.0354 20 6 6.0767 -2.8502 -7.5978 21 16 7.3722 -2.1263 -6.6600 22 6 6.2815 -1.4788 -5.5214 23 7 3.8699 -0.6465 -3.9307 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 1.4496 -1.4978 -1.4101 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.9593 -2.9428 -7.4350 32 1 6.2164 -3.4258 -8.5008 33 1 6.5705 -0.8922 -4.6619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609030861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 104.917818 kcal Electronic energy + Delta-G solvation = -18311.832518 eV Core-core repulsion = 15274.831709 eV Total energy + Delta-G solvation = -3037.000809 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.32295 -38.10806 -36.67702 -35.22480 -32.95487 -31.96877 -29.87722 -29.00544 -25.74503 -25.36091 -24.99682 -22.85857 -21.99043 -20.28330 -19.58624 -18.30514 -17.92838 -17.00663 -16.33537 -16.15874 -14.86436 -14.53645 -14.14903 -13.76560 -13.60276 -13.30289 -13.06953 -13.01526 -12.46652 -12.25208 -11.91952 -11.60494 -11.44267 -11.32403 -10.96656 -10.87345 -10.76799 -10.61078 -10.27891 -10.17662 -9.89228 -9.32239 -9.05670 -8.54256 -8.38190 -7.38778 -6.00255 -4.03411 0.35109 1.16490 1.22662 1.51940 2.13284 2.76469 2.93018 3.32071 3.39596 3.45633 3.68800 4.19916 4.44814 4.53341 4.91772 5.11502 5.14682 5.31704 5.37913 5.54056 5.68971 5.72964 5.83184 5.97977 6.05995 6.23129 6.64576 6.80624 7.02338 7.24895 7.69392 7.84133 8.19168 8.32587 8.40982 8.52610 9.03524 9.61780 11.07047 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.003269 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.935898 B = 8563.946816 C = 9291.647874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.213 3.787 3 H 0.038 0.962 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.675 5.675 13 C 0.146 3.854 14 C 0.197 3.803 15 N -0.387 5.387 16 O 0.080 5.920 17 C 0.229 3.771 18 C -0.051 4.051 19 C -0.104 4.104 20 C -0.231 4.231 21 S 0.196 5.804 22 C -0.184 4.184 23 N -0.455 5.455 24 H 0.092 0.908 25 H 0.029 0.971 26 H 0.006 0.994 27 H 0.260 0.740 28 H 0.329 0.671 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.156 0.844 32 H 0.173 0.827 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.308 -5.242 -21.340 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.106 3.894 3 H 0.056 0.944 4 C -0.534 4.534 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.306 5.306 13 C 0.015 3.985 14 C -0.076 4.076 15 N -0.095 5.095 16 O 0.021 5.979 17 C 0.009 3.991 18 C -0.068 4.068 19 C -0.134 4.134 20 C -0.366 4.366 21 S 0.461 5.539 22 C -0.324 4.324 23 N -0.189 5.189 24 H 0.111 0.889 25 H 0.048 0.952 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.174 0.826 32 H 0.191 0.809 33 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.744 -4.787 -20.777 24.342 hybrid contribution -2.298 -0.403 0.793 2.464 sum 9.446 -5.191 -19.984 22.705 Atomic orbital electron populations 1.22458 1.00388 0.99458 1.00719 1.19235 0.89793 0.94593 0.85803 0.94398 1.21154 1.30279 1.12538 0.89388 0.91801 1.24945 0.95285 0.95210 0.99067 1.69886 1.37305 1.23168 1.23344 0.86418 0.78506 0.79666 0.82690 1.19716 1.21061 1.21182 1.60870 1.58576 1.08737 1.02436 1.20253 0.99221 0.94406 0.84635 1.26001 0.84903 0.98276 0.98444 1.74619 1.18384 1.14484 1.01986 1.85375 1.16029 1.56052 1.40474 1.25721 0.86011 0.94792 0.92554 1.17203 0.87858 1.05118 0.96578 1.21224 0.99670 0.98617 0.93877 1.25533 0.95889 1.08980 1.06194 1.83202 1.08642 1.46508 1.15560 1.25313 0.96278 1.05152 1.05630 1.72213 1.20590 1.16923 1.09174 0.88949 0.95173 0.97483 0.93049 0.85478 0.93174 0.88372 0.82623 0.80948 0.80135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.42 2.57 -68.86 -0.18 5.24 16 3 H 0.04 1.04 7.80 -51.93 -0.40 0.63 16 4 C -0.49 -13.91 8.84 -34.44 -0.30 -14.21 16 5 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.73 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.67 -15.13 6.22 -109.22 -0.68 -15.81 16 13 C 0.15 2.83 6.11 -4.98 -0.03 2.80 16 14 C 0.20 3.64 7.71 -156.57 -1.21 2.44 16 15 N -0.39 -6.86 12.14 31.24 0.38 -6.48 16 16 O 0.08 1.24 11.33 16.49 0.19 1.43 16 17 C 0.23 3.39 8.14 -13.92 -0.11 3.27 16 18 C -0.05 -0.58 5.94 -104.97 -0.62 -1.20 16 19 C -0.10 -0.87 10.37 -39.02 -0.40 -1.28 16 20 C -0.23 -1.48 11.14 28.89 0.32 -1.16 16 21 S 0.20 1.31 23.03 -107.50 -2.48 -1.17 16 22 C -0.18 -1.80 10.67 29.52 0.31 -1.48 16 23 N -0.46 -7.98 11.50 -10.18 -0.12 -8.10 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 25 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.33 7.22 8.46 -39.29 -0.33 6.89 16 29 H 0.05 0.94 7.44 -51.93 -0.39 0.55 16 30 H 0.10 1.88 8.06 -51.93 -0.42 1.46 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -30.79 305.84 -7.96 -38.75 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.48 Total: 3.11 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.99 Total: -7.94 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.21 Total: -55.49 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.19 Total: 1.43 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.48 Total: -1.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.79 -7.96 -38.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.668 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds