Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 N 1.30042 * 126.17715 * 90.02488 * 14 13 12 16 16 O 1.21287 * 110.53527 * 179.97438 * 15 14 13 17 17 C 1.34260 * 109.68695 * 359.97438 * 16 15 14 18 18 C 1.47415 * 126.69811 * 179.97438 * 17 16 15 19 19 C 1.44345 * 123.32861 * 359.75658 * 18 17 16 20 20 C 1.32923 * 112.98803 * 179.76733 * 19 18 17 21 21 S 1.75551 * 110.34616 * 0.48165 * 20 19 18 22 22 C 1.34830 * 123.32949 * 180.02562 * 18 17 16 23 23 N 1.32335 * 106.60605 * 359.77246 * 17 16 15 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 29 29 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 30 30 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 31 31 H 1.08002 * 123.50368 * 359.96021 * 19 18 17 32 32 H 1.07996 * 124.83004 * 180.22770 * 20 19 18 33 33 H 1.07996 * 124.51906 * 359.95495 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 7 1.8585 -1.1536 -4.4281 16 8 2.5570 -1.6513 -5.2856 17 6 3.8467 -1.3748 -5.0354 18 6 5.0097 -1.7960 -5.8373 19 6 4.9000 -2.5936 -7.0354 20 6 6.0767 -2.8502 -7.5978 21 16 7.3722 -2.1263 -6.6600 22 6 6.2815 -1.4788 -5.5214 23 7 3.8699 -0.6465 -3.9307 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 1.4496 -1.4978 -1.4101 29 1 1.0870 0.6164 -2.5525 30 1 2.7588 1.0463 -2.1182 31 1 3.9593 -2.9428 -7.4350 32 1 6.2164 -3.4258 -8.5008 33 1 6.5705 -0.8922 -4.6619 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609030861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = 83.116440 kcal Electronic energy + Delta-G solvation = -18312.777897 eV Core-core repulsion = 15274.831709 eV Total energy + Delta-G solvation = -3037.946188 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -46.61482 -38.82607 -38.36866 -36.72619 -34.69309 -33.47812 -30.85956 -30.60726 -27.40424 -27.02137 -26.44393 -23.98665 -23.08029 -22.26171 -20.51007 -19.23466 -19.19968 -18.41564 -17.94988 -17.06206 -16.85630 -16.29446 -15.60511 -15.09448 -14.59294 -14.34145 -14.33475 -13.91726 -13.81970 -13.74584 -13.50887 -13.21756 -12.90876 -12.79898 -12.76316 -12.44844 -12.22877 -12.17406 -11.99841 -11.84524 -11.43690 -11.12132 -10.52192 -9.97542 -9.27620 -9.19987 -8.13457 -6.24636 -0.56030 0.35285 0.52988 0.90490 0.95689 1.41266 1.42823 1.55547 1.80024 1.84943 2.41197 2.49805 2.88426 3.15314 3.62913 3.80394 3.88940 4.23760 4.37599 4.44061 4.51452 4.60539 4.68081 4.83107 4.83492 4.97451 5.00413 5.16275 5.24528 5.29228 5.64433 5.72453 6.17254 6.47872 6.56151 6.86276 7.06614 7.44692 8.92693 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.003269 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.935898 B = 8563.946816 C = 9291.647874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.218 3.782 3 H 0.014 0.986 4 C -0.518 4.518 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.963 3.037 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.679 5.679 13 C 0.153 3.847 14 C 0.183 3.817 15 N -0.399 5.399 16 O 0.088 5.912 17 C 0.246 3.754 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.218 4.218 21 S 0.261 5.739 22 C -0.199 4.199 23 N -0.488 5.488 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.027 0.973 27 H 0.263 0.737 28 H 0.331 0.669 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.168 0.832 32 H 0.208 0.792 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 -6.577 -22.942 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.111 3.889 3 H 0.032 0.968 4 C -0.557 4.557 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.204 1.204 12 N -0.311 5.311 13 C 0.022 3.978 14 C -0.090 4.090 15 N -0.107 5.107 16 O 0.027 5.973 17 C 0.028 3.972 18 C -0.100 4.100 19 C -0.146 4.146 20 C -0.353 4.353 21 S 0.526 5.474 22 C -0.340 4.340 23 N -0.221 5.221 24 H 0.087 0.913 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.186 0.814 32 H 0.225 0.775 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.214 -6.122 -22.398 26.716 hybrid contribution -2.576 -0.018 1.128 2.812 sum 10.638 -6.140 -21.270 24.562 Atomic orbital electron populations 1.22266 0.99526 0.99443 1.00527 1.19001 0.90342 0.93142 0.86456 0.96841 1.21399 1.30741 1.12601 0.90950 0.92987 1.25698 0.95335 0.95867 1.01813 1.69996 1.37786 1.24060 1.24148 0.85429 0.78107 0.78542 0.79057 1.19599 1.20450 1.20391 1.60704 1.58414 1.09179 1.02782 1.20105 0.99647 0.93897 0.84154 1.25739 0.85570 0.99139 0.98565 1.74570 1.19025 1.14821 1.02292 1.85333 1.16381 1.55756 1.39820 1.26346 0.86418 0.92799 0.91670 1.17499 0.86939 1.07550 0.98052 1.21314 1.01181 0.98971 0.93178 1.25986 0.94985 1.07747 1.06611 1.83056 1.06943 1.44184 1.13201 1.25522 0.96993 1.05052 1.06410 1.72178 1.20217 1.18866 1.10869 0.91318 0.94984 0.95356 0.92790 0.85246 0.92417 0.88708 0.81442 0.77544 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.77 8.94 71.98 0.64 -7.12 16 2 C 0.22 11.37 2.57 44.17 0.11 11.48 16 3 H 0.01 0.77 7.80 -2.39 -0.02 0.75 16 4 C -0.52 -29.61 8.84 25.60 0.23 -29.39 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 8 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.68 -31.09 6.22 -499.47 -3.11 -34.20 16 13 C 0.15 6.06 6.11 85.56 0.52 6.59 16 14 C 0.18 6.89 7.71 138.53 1.07 7.96 16 15 N -0.40 -14.24 12.14 -58.35 -0.71 -14.94 16 16 O 0.09 2.70 11.33 69.08 0.78 3.49 16 17 C 0.25 7.29 8.14 87.15 0.71 8.00 16 18 C -0.08 -1.79 5.94 -20.09 -0.12 -1.91 16 19 C -0.12 -1.70 10.37 22.65 0.23 -1.47 16 20 C -0.22 -1.99 11.14 66.65 0.74 -1.24 16 21 S 0.26 2.68 23.03 -56.49 -1.30 1.38 16 22 C -0.20 -3.68 10.67 67.04 0.72 -2.96 16 23 N -0.49 -17.45 11.50 -302.54 -3.48 -20.93 16 24 H 0.07 3.72 6.07 -2.39 -0.01 3.70 16 25 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 26 H 0.03 1.22 7.45 -2.38 -0.02 1.20 16 27 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.33 14.76 8.46 -89.69 -0.76 14.01 16 29 H 0.06 2.19 7.44 -2.38 -0.02 2.17 16 30 H 0.09 3.77 8.06 -2.39 -0.02 3.75 16 31 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.21 0.44 8.06 -2.91 -0.02 0.42 16 33 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -66.70 305.84 0.15 -66.55 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.39 Total: 13.93 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 5.31 Total: -8.97 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -7.05 Total: -123.08 kcal Atomic # 8 Polarization: 2.70 SS G_CDS: 0.78 Total: 3.49 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.30 Total: 1.38 kcal Total: -66.70 0.15 -66.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609030861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.663 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds