Wall clock time and date at job start Wed Apr 15 2020 11:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47070 * 335.98637 * 3 2 1 5 5 C 1.36939 * 120.00324 * 266.77595 * 4 3 2 6 6 H 1.07996 * 120.00154 * 137.58494 * 5 4 3 7 7 C 1.38978 * 119.99780 * 317.86552 * 5 4 3 8 8 N 1.31418 * 119.99752 * 168.26774 * 7 5 4 9 9 Si 1.86795 * 120.00093 * 348.26624 * 7 5 4 10 10 H 1.48499 * 109.47458 * 91.49094 * 9 7 5 11 11 H 1.48502 * 109.47353 * 211.49377 * 9 7 5 12 12 H 1.48507 * 109.47189 * 331.48965 * 9 7 5 13 13 C 1.34781 * 120.00040 * 86.77728 * 4 3 2 14 14 O 1.21683 * 119.99994 * 174.65321 * 13 4 3 15 15 C 1.47068 * 119.99550 * 354.65733 * 13 4 3 16 16 C 1.35176 * 122.48874 * 174.77104 * 15 13 4 17 17 S 1.76172 * 108.25080 * 179.87358 * 16 15 13 18 18 C 1.76056 * 90.18166 * 0.31466 * 17 16 15 19 19 N 1.38434 * 125.17528 * 179.83550 * 18 17 16 20 20 C 1.46503 * 120.00251 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47160 * 180.02562 * 20 19 18 22 22 N 1.29441 * 109.64302 * 359.81806 * 18 17 16 23 23 H 4.40636 * 5.51327 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.46685 * 215.98934 * 3 2 1 25 25 H 1.08999 * 109.47074 * 95.98878 * 3 2 1 26 26 H 0.97006 * 119.99575 * 179.97438 * 8 7 5 27 27 H 1.08006 * 125.87212 * 359.97438 * 16 15 13 28 28 H 0.97001 * 119.99658 * 179.97438 * 19 18 17 29 29 H 1.09005 * 109.46881 * 300.00365 * 20 19 18 30 30 H 1.09000 * 109.47086 * 60.00055 * 20 19 18 31 31 H 1.09000 * 109.47434 * 59.99830 * 21 20 19 32 32 H 1.08996 * 109.47057 * 180.02562 * 21 20 19 33 33 H 1.09006 * 109.46423 * 299.99745 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.2608 0.5621 5 6 3.4260 -1.3482 1.8973 6 1 3.1284 -2.2214 2.4588 7 6 4.0994 -0.3107 2.5310 8 7 4.1773 -0.2823 3.8426 9 14 4.8936 1.0433 1.5186 10 1 3.9275 2.1561 1.3355 11 1 6.0999 1.5461 2.2240 12 1 5.2852 0.5042 0.1914 13 6 3.2981 -2.3353 -0.2350 14 8 3.7951 -3.3530 0.2100 15 6 2.8755 -2.2777 -1.6425 16 6 3.1084 -3.2859 -2.5123 17 16 2.4467 -2.8266 -4.0791 18 6 1.9158 -1.2872 -3.4099 19 7 1.2542 -0.2967 -4.1154 20 6 0.9455 -0.4897 -5.5344 21 6 0.2181 0.7449 -6.0706 22 7 2.2378 -1.2228 -2.1579 23 1 -1.0498 -0.0002 0.0003 24 1 3.0088 0.8323 0.6039 25 1 3.0092 0.1080 -1.0220 26 1 4.6477 0.4417 4.2849 27 1 3.6118 -4.2141 -2.2853 28 1 0.9951 0.5252 -3.6701 29 1 1.8712 -0.6359 -6.0911 30 1 0.3086 -1.3665 -5.6517 31 1 0.8552 1.6215 -5.9534 32 1 -0.0120 0.6011 -7.1263 33 1 -0.7076 0.8914 -5.5140 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847171405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:34 Heat of formation + Delta-G solvation = 102.675896 kcal Electronic energy + Delta-G solvation = -19355.216092 eV Core-core repulsion = 16318.118066 eV Total energy + Delta-G solvation = -3037.098026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.83094 -37.98812 -36.31198 -35.30797 -32.52850 -31.48422 -31.28528 -28.54464 -26.71582 -25.95936 -23.74653 -23.07372 -21.23668 -18.91646 -18.39059 -17.93204 -16.76899 -16.48802 -15.70480 -15.60493 -15.35200 -15.14200 -14.63810 -13.83521 -13.67940 -13.06737 -12.95057 -12.75423 -12.60771 -12.44640 -12.38169 -12.22555 -11.92885 -11.39093 -11.00489 -10.64225 -10.22738 -10.13352 -9.66098 -9.46409 -9.19247 -9.12158 -8.88056 -8.63021 -7.86746 -7.60005 -6.39248 -4.04659 1.09170 1.25131 1.89227 2.69658 2.92815 3.04774 3.20850 3.24734 3.45360 3.69650 4.12527 4.24474 4.52320 4.60303 4.68570 4.94452 4.97912 5.06718 5.28031 5.35651 5.49135 5.64750 5.71158 5.85713 6.07255 6.14097 6.43227 6.62592 6.65779 7.26329 7.54426 8.00952 8.25482 8.40485 8.50161 8.88585 9.23573 9.71223 10.71609 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.006219 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.106847 B = 4501.577603 C = 5129.397152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.130 4.130 3 C 0.192 3.808 4 N -0.441 5.441 5 C -0.308 4.308 6 H 0.107 0.893 7 C 0.061 3.939 8 N -0.863 5.863 9 Si 0.882 3.118 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.260 1.260 13 C 0.533 3.467 14 O -0.552 6.552 15 C 0.079 3.921 16 C -0.225 4.225 17 S 0.035 5.965 18 C 0.341 3.659 19 N -0.697 5.697 20 C 0.119 3.881 21 C -0.162 4.162 22 N -0.515 5.515 23 H 0.206 0.794 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.276 0.724 27 H 0.184 0.816 28 H 0.413 0.587 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 3.409 -20.446 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.131 4.131 3 C 0.069 3.931 4 N -0.160 5.160 5 C -0.436 4.436 6 H 0.125 0.875 7 C -0.145 4.145 8 N -0.499 5.499 9 Si 0.710 3.290 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.319 3.681 14 O -0.433 6.433 15 C -0.051 4.051 16 C -0.367 4.367 17 S 0.281 5.719 18 C -0.032 4.032 19 N -0.340 5.340 20 C -0.005 4.005 21 C -0.220 4.220 22 N -0.242 5.242 23 H 0.223 0.777 24 H 0.096 0.904 25 H 0.131 0.869 26 H 0.086 0.914 27 H 0.201 0.799 28 H 0.251 0.749 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.720 2.916 -20.870 22.118 hybrid contribution 0.218 1.081 0.645 1.278 sum -6.502 3.997 -20.225 21.617 Atomic orbital electron populations 1.24435 0.95417 1.02144 1.04792 1.23389 0.94407 0.98636 0.96707 1.19259 0.84566 0.88797 1.00433 1.43515 1.55512 1.08715 1.08300 1.19113 1.35792 1.07565 0.81114 0.87527 1.25439 0.95441 0.98145 0.95500 1.69664 1.39867 1.32683 1.07669 0.86875 0.79224 0.81609 0.81287 1.19814 1.21127 1.18460 1.17162 0.82689 0.85816 0.82420 1.90697 1.47069 1.31222 1.74307 1.20486 0.98554 0.88895 0.97157 1.26492 1.11763 1.05581 0.92894 1.84594 1.58422 1.14382 1.14519 1.24384 0.96157 0.92173 0.90532 1.43847 1.62527 1.18044 1.09532 1.21453 0.99971 0.99379 0.79711 1.21944 1.00959 0.97217 1.01878 1.67129 1.21327 1.27777 1.07983 0.77728 0.90357 0.86872 0.91359 0.79915 0.74873 0.91627 0.91638 0.91594 0.90478 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.67 19.25 29.55 0.57 -4.10 16 2 C -0.13 -2.79 12.03 -37.12 -0.45 -3.23 16 3 C 0.19 4.39 4.03 -6.83 -0.03 4.36 16 4 N -0.44 -11.61 2.12 -119.28 -0.25 -11.87 16 5 C -0.31 -9.09 9.33 -15.00 -0.14 -9.23 16 6 H 0.11 3.48 8.04 -52.49 -0.42 3.06 16 7 C 0.06 1.75 5.42 -17.45 -0.09 1.65 16 8 N -0.86 -25.43 13.96 55.50 0.77 -24.66 16 9 Si 0.88 21.15 24.71 -169.99 -4.20 16.95 16 10 H -0.27 -6.07 6.68 56.52 0.38 -5.69 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.26 -6.17 7.04 56.52 0.40 -5.77 16 13 C 0.53 13.67 7.55 -12.68 -0.10 13.58 16 14 O -0.55 -15.65 16.63 5.20 0.09 -15.57 16 15 C 0.08 1.66 6.41 -84.60 -0.54 1.12 16 16 C -0.22 -3.96 10.84 29.64 0.32 -3.64 16 17 S 0.04 0.47 22.61 -107.50 -2.43 -1.96 16 18 C 0.34 5.01 8.42 -88.05 -0.74 4.27 16 19 N -0.70 -7.56 5.71 -61.01 -0.35 -7.90 16 20 C 0.12 0.88 6.31 -4.04 -0.03 0.85 16 21 C -0.16 -0.83 10.03 37.16 0.37 -0.46 16 22 N -0.52 -9.55 5.57 -10.60 -0.06 -9.61 16 23 H 0.21 2.97 7.80 -54.10 -0.42 2.55 16 24 H 0.08 1.84 3.16 -51.93 -0.16 1.68 16 25 H 0.11 2.41 5.60 -51.93 -0.29 2.12 16 26 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.18 3.07 8.01 -52.48 -0.42 2.65 16 28 H 0.41 4.26 8.60 -40.82 -0.35 3.91 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -33.71 301.99 -6.08 -39.78 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.35 Total: 5.11 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.85 Total: 5.17 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.11 Total: -54.04 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.20 Total: 16.95 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.43 Total: -1.96 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.71 -6.08 -39.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847171405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.458 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds