Wall clock time and date at job start Wed Apr 15 2020 11:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47070 * 335.98637 * 3 2 1 5 5 C 1.36939 * 120.00324 * 266.77595 * 4 3 2 6 6 H 1.07996 * 120.00154 * 137.58494 * 5 4 3 7 7 C 1.38978 * 119.99780 * 317.86552 * 5 4 3 8 8 N 1.31418 * 119.99752 * 168.26774 * 7 5 4 9 9 Si 1.86795 * 120.00093 * 348.26624 * 7 5 4 10 10 H 1.48499 * 109.47458 * 91.49094 * 9 7 5 11 11 H 1.48502 * 109.47353 * 211.49377 * 9 7 5 12 12 H 1.48507 * 109.47189 * 331.48965 * 9 7 5 13 13 C 1.34781 * 120.00040 * 86.77728 * 4 3 2 14 14 O 1.21683 * 119.99994 * 174.65321 * 13 4 3 15 15 C 1.47068 * 119.99550 * 354.65733 * 13 4 3 16 16 C 1.35176 * 122.48874 * 174.77104 * 15 13 4 17 17 S 1.76172 * 108.25080 * 179.87358 * 16 15 13 18 18 C 1.76056 * 90.18166 * 0.31466 * 17 16 15 19 19 N 1.38434 * 125.17528 * 179.83550 * 18 17 16 20 20 C 1.46503 * 120.00251 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.47160 * 180.02562 * 20 19 18 22 22 N 1.29441 * 109.64302 * 359.81806 * 18 17 16 23 23 H 4.40636 * 5.51327 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.46685 * 215.98934 * 3 2 1 25 25 H 1.08999 * 109.47074 * 95.98878 * 3 2 1 26 26 H 0.97006 * 119.99575 * 179.97438 * 8 7 5 27 27 H 1.08006 * 125.87212 * 359.97438 * 16 15 13 28 28 H 0.97001 * 119.99658 * 179.97438 * 19 18 17 29 29 H 1.09005 * 109.46881 * 300.00365 * 20 19 18 30 30 H 1.09000 * 109.47086 * 60.00055 * 20 19 18 31 31 H 1.09000 * 109.47434 * 59.99830 * 21 20 19 32 32 H 1.08996 * 109.47057 * 180.02562 * 21 20 19 33 33 H 1.09006 * 109.46423 * 299.99745 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.2608 0.5621 5 6 3.4260 -1.3482 1.8973 6 1 3.1284 -2.2214 2.4588 7 6 4.0994 -0.3107 2.5310 8 7 4.1773 -0.2823 3.8426 9 14 4.8936 1.0433 1.5186 10 1 3.9275 2.1561 1.3355 11 1 6.0999 1.5461 2.2240 12 1 5.2852 0.5042 0.1914 13 6 3.2981 -2.3353 -0.2350 14 8 3.7951 -3.3530 0.2100 15 6 2.8755 -2.2777 -1.6425 16 6 3.1084 -3.2859 -2.5123 17 16 2.4467 -2.8266 -4.0791 18 6 1.9158 -1.2872 -3.4099 19 7 1.2542 -0.2967 -4.1154 20 6 0.9455 -0.4897 -5.5344 21 6 0.2181 0.7449 -6.0706 22 7 2.2378 -1.2228 -2.1579 23 1 -1.0498 -0.0002 0.0003 24 1 3.0088 0.8323 0.6039 25 1 3.0092 0.1080 -1.0220 26 1 4.6477 0.4417 4.2849 27 1 3.6118 -4.2141 -2.2853 28 1 0.9951 0.5252 -3.6701 29 1 1.8712 -0.6359 -6.0911 30 1 0.3086 -1.3665 -5.6517 31 1 0.8552 1.6215 -5.9534 32 1 -0.0120 0.6011 -7.1263 33 1 -0.7076 0.8914 -5.5140 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847171405.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:34 Heat of formation + Delta-G solvation = 78.951463 kcal Electronic energy + Delta-G solvation = -19356.244860 eV Core-core repulsion = 16318.118066 eV Total energy + Delta-G solvation = -3038.126795 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42928 -39.53084 -37.37225 -37.16405 -34.52260 -33.25875 -32.20246 -29.67113 -28.55552 -27.76154 -25.19545 -23.80934 -22.71121 -20.41744 -20.15075 -19.44758 -18.41119 -18.03077 -17.44333 -16.78089 -16.59854 -16.15528 -16.02052 -15.69090 -15.01380 -14.87280 -14.60544 -14.28776 -14.23061 -14.01736 -13.21141 -12.97308 -12.94754 -12.62973 -12.57395 -12.56728 -12.01401 -11.36011 -11.27001 -11.24388 -10.98285 -10.74273 -10.33795 -10.07258 -9.90669 -8.75135 -8.56607 -6.30336 -0.24562 0.10421 0.57939 1.12189 1.18963 1.32792 1.37381 1.82681 1.97600 2.10372 2.13933 2.43995 2.86466 2.96688 3.60707 3.72057 4.04944 4.20677 4.22103 4.28860 4.44128 4.51163 4.61124 4.83873 4.99175 5.05985 5.18544 5.30016 5.47543 5.69232 5.93225 6.25405 6.45848 6.74565 6.87518 6.90005 7.10784 7.68458 8.59284 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.021078 B = 0.006219 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.106847 B = 4501.577603 C = 5129.397152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.199 3.801 4 N -0.454 5.454 5 C -0.332 4.332 6 H 0.049 0.951 7 C 0.017 3.983 8 N -0.907 5.907 9 Si 0.948 3.052 10 H -0.240 1.240 11 H -0.276 1.276 12 H -0.258 1.258 13 C 0.526 3.474 14 O -0.599 6.599 15 C 0.053 3.947 16 C -0.234 4.234 17 S 0.138 5.862 18 C 0.335 3.665 19 N -0.682 5.682 20 C 0.110 3.890 21 C -0.156 4.156 22 N -0.545 5.545 23 H 0.247 0.753 24 H 0.069 0.931 25 H 0.130 0.870 26 H 0.284 0.716 27 H 0.182 0.818 28 H 0.416 0.584 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 5.232 -24.669 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.186 4.186 3 C 0.077 3.923 4 N -0.173 5.173 5 C -0.460 4.460 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.544 5.544 9 Si 0.771 3.229 10 H -0.165 1.165 11 H -0.202 1.202 12 H -0.182 1.182 13 C 0.315 3.685 14 O -0.483 6.483 15 C -0.078 4.078 16 C -0.378 4.378 17 S 0.385 5.615 18 C -0.039 4.039 19 N -0.324 5.324 20 C -0.013 4.013 21 C -0.214 4.214 22 N -0.273 5.273 23 H 0.264 0.736 24 H 0.087 0.913 25 H 0.147 0.853 26 H 0.094 0.906 27 H 0.199 0.801 28 H 0.255 0.745 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.201 4.778 -25.152 26.883 hybrid contribution 0.497 0.384 1.760 1.868 sum -7.705 5.162 -23.392 25.163 Atomic orbital electron populations 1.25356 0.96207 0.99134 1.02076 1.23369 0.94728 1.01304 0.99241 1.19213 0.86004 0.86424 1.00628 1.43586 1.56229 1.10332 1.07127 1.18715 1.37780 1.06558 0.82943 0.93323 1.26219 0.95172 1.00671 0.96579 1.69776 1.40904 1.34254 1.09464 0.85837 0.78783 0.78911 0.79330 1.16527 1.20170 1.18233 1.17937 0.81329 0.84722 0.84560 1.90634 1.48885 1.32759 1.76031 1.19766 1.01737 0.91377 0.94929 1.26769 1.10599 1.04829 0.95651 1.84189 1.56044 1.11740 1.09540 1.24660 0.95522 0.93665 0.90080 1.44219 1.60555 1.17082 1.10573 1.21795 1.00906 1.00980 0.77604 1.21928 1.00581 0.96034 1.02840 1.66942 1.22922 1.27490 1.09979 0.73624 0.91314 0.85274 0.90635 0.80071 0.74476 0.90649 0.90793 0.91517 0.88587 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.36 19.25 74.32 1.43 -5.93 16 2 C -0.19 -7.79 12.03 31.13 0.37 -7.42 16 3 C 0.20 9.12 4.03 84.58 0.34 9.46 16 4 N -0.45 -24.94 2.12 -649.51 -1.38 -26.31 16 5 C -0.33 -20.94 9.33 84.07 0.78 -20.15 16 6 H 0.05 3.52 8.04 -2.91 -0.02 3.50 16 7 C 0.02 0.98 5.42 84.93 0.46 1.44 16 8 N -0.91 -55.94 13.96 21.67 0.30 -55.64 16 9 Si 0.95 44.32 24.71 68.60 1.69 46.01 16 10 H -0.24 -9.98 6.68 99.48 0.66 -9.32 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.26 -11.87 7.04 99.48 0.70 -11.17 16 13 C 0.53 28.32 7.55 86.56 0.65 28.98 16 14 O -0.60 -36.31 16.63 -4.29 -0.07 -36.38 16 15 C 0.05 2.21 6.41 40.48 0.26 2.47 16 16 C -0.23 -8.06 10.84 67.11 0.73 -7.33 16 17 S 0.14 3.19 22.61 -56.49 -1.28 1.91 16 18 C 0.33 8.84 8.42 179.45 1.51 10.35 16 19 N -0.68 -12.25 5.71 -346.95 -1.98 -14.22 16 20 C 0.11 1.13 6.31 86.38 0.55 1.68 16 21 C -0.16 -0.94 10.03 71.98 0.72 -0.22 16 22 N -0.54 -19.45 5.57 -187.44 -1.04 -20.49 16 23 H 0.25 6.08 7.80 -4.43 -0.03 6.05 16 24 H 0.07 3.20 3.16 -2.39 -0.01 3.19 16 25 H 0.13 5.43 5.60 -2.39 -0.01 5.41 16 26 H 0.28 15.89 8.31 -92.70 -0.77 15.12 16 27 H 0.18 6.11 8.01 -2.91 -0.02 6.09 16 28 H 0.42 7.12 8.60 -92.71 -0.80 6.32 16 29 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 Total: -1.00 -80.19 301.99 4.36 -75.83 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.31 Total: 15.98 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 7.81 Total: 13.32 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -4.10 Total: -116.67 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.07 Total: -36.38 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.69 Total: 46.01 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.28 Total: 1.91 kcal Total: -80.19 4.36 -75.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847171405.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.782 kcal (2) G-P(sol) polarization free energy of solvation -80.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds