Wall clock time and date at job start Wed Apr 15 2020 11:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46750 * 2 1 4 4 C 1.36717 * 119.99637 * 264.62538 * 3 2 1 5 5 H 1.08002 * 119.99761 * 141.70142 * 4 3 2 6 6 C 1.39119 * 120.00094 * 321.69666 * 4 3 2 7 7 N 1.31322 * 120.00357 * 339.31336 * 6 4 3 8 8 Si 1.86807 * 120.00036 * 159.31127 * 6 4 3 9 9 H 1.48505 * 109.46879 * 59.99896 * 8 6 4 10 10 H 1.48502 * 109.47384 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47053 * 300.00325 * 8 6 4 12 12 C 1.34770 * 120.00446 * 84.63069 * 3 2 1 13 13 O 1.21755 * 120.00525 * 180.02562 * 12 3 2 14 14 C 1.46232 * 119.99702 * 359.97438 * 12 3 2 15 15 C 1.34983 * 120.00012 * 180.02562 * 14 12 3 16 16 C 1.47145 * 119.99948 * 180.02562 * 15 14 12 17 17 C 1.39895 * 120.16571 * 0.02562 * 16 15 14 18 18 C 1.37864 * 119.84764 * 179.97438 * 17 16 15 19 19 C 1.38415 * 120.19063 * 0.02562 * 18 17 16 20 20 C 1.38509 * 120.33663 * 359.71855 * 19 18 17 21 21 Cl 1.73596 * 119.92843 * 180.30254 * 20 19 18 22 22 C 1.38020 * 120.14561 * 0.55992 * 20 19 18 23 23 H 1.08997 * 109.47371 * 60.00183 * 1 2 3 24 24 H 1.09001 * 109.47097 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47162 * 299.99782 * 1 2 3 26 26 H 1.08998 * 109.47162 * 240.00218 * 2 1 3 27 27 H 1.08997 * 109.47371 * 119.99817 * 2 1 3 28 28 H 0.96998 * 120.00432 * 180.02562 * 7 6 4 29 29 H 1.08002 * 120.00317 * 0.02562 * 14 12 3 30 30 H 1.08002 * 119.99671 * 0.02562 * 15 14 12 31 31 H 1.08001 * 120.07925 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.90717 * 180.02562 * 18 17 16 33 33 H 1.07994 * 119.83042 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.09678 * 179.72043 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3506 1.9887 -1.1788 5 1 2.1172 3.0318 -1.3334 6 6 2.9895 1.2633 -2.1793 7 7 3.6314 0.1572 -1.8805 8 14 2.9344 1.8624 -3.9478 9 1 3.5508 3.2108 -4.0330 10 1 3.6867 0.9192 -4.8137 11 1 1.5226 1.9339 -4.4024 12 6 2.1399 2.0531 1.1620 13 8 2.5452 3.2012 1.1619 14 6 1.7840 1.4034 2.4228 15 6 1.9053 2.0764 3.5866 16 6 1.5477 1.4225 4.8553 17 6 1.0821 0.1033 4.8595 18 6 0.7494 -0.5032 6.0520 19 6 0.8743 0.1896 7.2438 20 6 1.3395 1.4942 7.2492 21 17 1.4994 2.3504 8.7508 22 6 1.6711 2.1168 6.0629 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.0772 -0.3484 -2.5780 29 1 1.4240 0.3851 2.4229 30 1 2.2648 3.0948 3.5865 31 1 0.9835 -0.4389 3.9306 32 1 0.3903 -1.5217 6.0564 33 1 0.6117 -0.2910 8.1746 34 1 2.0294 3.1355 6.0676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067687918.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:30 Heat of formation + Delta-G solvation = -15.824394 kcal Electronic energy + Delta-G solvation = -18514.907558 eV Core-core repulsion = 15438.334517 eV Total energy + Delta-G solvation = -3076.573042 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65880 -40.05928 -37.51644 -36.97987 -34.92577 -33.99060 -31.90769 -31.21190 -30.53885 -27.36666 -25.03358 -23.95850 -23.59944 -22.06602 -19.76035 -18.89423 -18.44576 -17.49707 -17.05549 -16.44495 -16.37754 -15.74891 -15.55860 -14.98620 -14.59400 -14.53823 -14.52640 -14.36235 -13.60135 -13.57010 -13.22324 -12.85933 -12.71841 -12.67511 -12.55487 -12.37246 -12.17092 -12.10976 -11.84737 -11.80628 -11.18675 -10.91299 -10.45547 -9.82858 -9.51827 -9.21338 -8.39706 -6.09056 -0.44073 0.21867 1.02575 1.11224 1.40944 1.43164 1.51564 2.27087 2.46605 2.79500 3.05547 3.09274 3.66708 3.80712 3.99043 4.18350 4.20390 4.25277 4.36853 4.44830 4.61827 4.69310 4.82202 4.89156 5.02119 5.06395 5.19231 5.28425 5.33995 5.39906 5.48487 5.54630 5.63388 5.79974 6.19215 6.53369 7.14905 7.41714 8.05332 8.62954 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.038152 B = 0.003403 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.725685 B = 8225.050097 C = 8679.989376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.096 3.904 3 N -0.437 5.437 4 C -0.349 4.349 5 H 0.063 0.937 6 C 0.008 3.992 7 N -0.882 5.882 8 Si 0.983 3.017 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.261 1.261 12 C 0.459 3.541 13 O -0.642 6.642 14 C -0.174 4.174 15 C -0.058 4.058 16 C -0.057 4.057 17 C -0.108 4.108 18 C -0.098 4.098 19 C -0.105 4.105 20 C -0.044 4.044 21 Cl -0.070 7.070 22 C -0.106 4.106 23 H 0.040 0.960 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.277 0.723 29 H 0.151 0.849 30 H 0.113 0.887 31 H 0.144 0.856 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -6.865 15.719 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.027 4.027 3 N -0.153 5.153 4 C -0.477 4.477 5 H 0.081 0.919 6 C -0.196 4.196 7 N -0.518 5.518 8 Si 0.806 3.194 9 H -0.203 1.203 10 H -0.193 1.193 11 H -0.186 1.186 12 C 0.252 3.748 13 O -0.532 6.532 14 C -0.194 4.194 15 C -0.079 4.079 16 C -0.058 4.058 17 C -0.126 4.126 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.071 4.071 21 Cl -0.041 7.041 22 C -0.125 4.125 23 H 0.059 0.941 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.131 0.869 31 H 0.162 0.838 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.422 -6.442 15.691 18.515 hybrid contribution 0.447 0.806 -0.931 1.310 sum -6.975 -5.637 14.760 17.271 Atomic orbital electron populations 1.22133 0.94899 1.02805 1.01402 1.21704 0.94292 0.83177 1.03518 1.43658 1.54087 1.13062 1.04538 1.19372 1.39079 0.96987 0.92306 0.91933 1.26185 0.92858 0.96450 1.04101 1.69951 1.29090 1.17462 1.35335 0.85167 0.79120 0.78124 0.76976 1.20350 1.19295 1.18608 1.19087 0.82692 0.87443 0.85587 1.90584 1.53767 1.20880 1.87976 1.23168 1.03276 1.01425 0.91550 1.22166 0.95760 0.99037 0.90938 1.18922 1.00499 0.94843 0.91516 1.21810 0.97118 0.93419 1.00295 1.21418 0.98350 1.01427 0.90413 1.21509 0.98360 0.91967 1.00556 1.20918 1.04786 0.94525 0.86842 1.98367 1.96515 1.77356 1.31881 1.21313 1.00093 1.00755 0.90361 0.94092 0.89131 0.92712 0.89752 0.91152 0.91328 0.83147 0.86876 0.83812 0.81387 0.82431 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 10.09 71.98 0.73 -4.41 16 2 C 0.10 4.03 5.28 86.38 0.46 4.49 16 3 N -0.44 -22.84 2.52 -640.58 -1.61 -24.45 16 4 C -0.35 -20.12 8.88 84.14 0.75 -19.38 16 5 H 0.06 3.86 7.78 -2.91 -0.02 3.84 16 6 C 0.01 0.42 4.91 84.98 0.42 0.84 16 7 N -0.88 -47.21 11.55 21.69 0.25 -46.96 16 8 Si 0.98 42.00 29.60 68.60 2.03 44.03 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 12 C 0.46 23.82 7.52 86.32 0.65 24.47 16 13 O -0.64 -38.90 16.11 -4.53 -0.07 -38.97 16 14 C -0.17 -6.69 8.12 23.60 0.19 -6.50 16 15 C -0.06 -2.01 9.46 23.86 0.23 -1.79 16 16 C -0.06 -1.54 5.87 -20.15 -0.12 -1.66 16 17 C -0.11 -2.33 9.41 22.58 0.21 -2.12 16 18 C -0.10 -1.57 10.03 22.22 0.22 -1.35 16 19 C -0.11 -1.76 9.82 22.38 0.22 -1.54 16 20 C -0.04 -0.92 6.31 22.28 0.14 -0.78 16 21 Cl -0.07 -1.36 28.95 -2.72 -0.08 -1.44 16 22 C -0.11 -2.61 9.58 22.61 0.22 -2.40 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.05 1.71 7.56 -2.39 -0.02 1.69 16 26 H 0.08 3.93 5.62 -2.39 -0.01 3.92 16 27 H 0.07 2.60 6.41 -2.39 -0.02 2.59 16 28 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.15 4.69 4.16 -2.91 -0.01 4.68 16 30 H 0.11 4.33 7.52 -2.91 -0.02 4.31 16 31 H 0.14 2.76 6.17 -2.91 -0.02 2.74 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.32 309.30 5.94 -64.38 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 1.12 Total: 15.52 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.31 Total: -12.12 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.36 Total: -71.41 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.07 Total: -38.97 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -70.32 5.94 -64.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687918.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.554 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds