Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46598 * 2 1 4 4 C 1.46904 * 111.00040 * 179.97438 * 3 2 1 5 5 C 1.50693 * 109.47460 * 180.02562 * 4 3 2 6 6 N 1.30207 * 126.12094 * 270.00711 * 5 4 3 7 7 O 1.21278 * 110.62567 * 179.97438 * 6 5 4 8 8 C 1.34564 * 109.60573 * 359.97438 * 7 6 5 9 9 C 1.41797 * 126.75517 * 180.26388 * 8 7 6 10 10 S 1.75669 * 125.24847 * 179.70886 * 9 8 7 11 11 C 1.75465 * 92.10646 * 179.97438 * 10 9 8 12 12 C 1.32575 * 111.41790 * 0.02562 * 11 10 9 13 13 C 1.39705 * 125.24609 * 359.40509 * 9 8 7 14 14 C 1.40369 * 123.74705 * 359.97438 * 13 9 8 15 15 H 1.08004 * 120.00137 * 22.57839 * 14 13 9 16 16 C 1.40170 * 120.00490 * 202.58218 * 14 13 9 17 17 N 1.30751 * 119.99255 * 10.09299 * 16 14 13 18 18 Si 1.86792 * 120.00273 * 190.09422 * 16 14 13 19 19 H 1.48504 * 109.47283 * 89.99738 * 18 16 14 20 20 H 1.48501 * 109.47157 * 209.99859 * 18 16 14 21 21 H 1.48501 * 109.47030 * 329.99797 * 18 16 14 22 22 N 1.32836 * 106.49103 * 0.02562 * 8 7 6 23 23 H 1.08999 * 109.46432 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46732 * 299.99543 * 1 2 3 25 25 H 1.08994 * 109.47212 * 60.00077 * 1 2 3 26 26 H 1.08991 * 109.46977 * 240.00341 * 2 1 3 27 27 H 1.08994 * 109.47212 * 119.99923 * 2 1 3 28 28 H 1.00898 * 111.00667 * 303.95497 * 3 2 1 29 29 H 1.09000 * 109.46588 * 59.99787 * 4 3 2 30 30 H 1.09003 * 109.46985 * 300.00341 * 4 3 2 31 31 H 1.07997 * 124.28670 * 180.02562 * 11 10 9 32 32 H 1.08006 * 122.76672 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99011 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4881 1.4244 0.0006 5 6 3.9523 2.8581 0.0012 6 7 4.1890 3.5886 -1.0502 7 8 4.5484 4.7006 -0.7258 8 6 4.5768 4.7922 0.6165 9 6 4.9386 5.9297 1.3818 10 16 4.9548 6.0076 3.1367 11 6 5.4925 7.6777 3.1222 12 6 5.6429 8.1271 1.8841 13 6 5.3429 7.1595 0.8566 14 6 5.4432 7.4253 -0.5180 15 1 4.8808 6.8333 -1.2250 16 6 6.2732 8.4589 -0.9734 17 7 7.1010 9.0443 -0.1477 18 14 6.1968 9.0000 -2.7596 19 1 5.1886 10.0804 -2.9069 20 1 7.5282 9.5046 -3.1814 21 1 5.8128 7.8452 -3.6106 22 7 4.1942 3.6089 1.0834 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8899 27 1 1.8934 -0.5138 0.8899 28 1 1.6441 1.9014 -0.7813 29 1 3.8653 0.9203 -0.8891 30 1 3.8647 0.9205 0.8908 31 1 5.6775 8.2650 4.0095 32 1 5.9675 9.1332 1.6628 33 1 7.6751 9.7598 -0.4628 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872171464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 77.353800 kcal Electronic energy + Delta-G solvation = -18694.667661 eV Core-core repulsion = 15656.471586 eV Total energy + Delta-G solvation = -3038.196075 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.98791 -36.81155 -36.65380 -34.35193 -33.44359 -32.08376 -30.34128 -28.77817 -26.45010 -25.64252 -22.89690 -22.10502 -21.95153 -20.58459 -18.96502 -17.66250 -16.74309 -16.15510 -15.85605 -15.51299 -15.11523 -14.91649 -14.39568 -13.89302 -13.31960 -12.68425 -12.62092 -12.44287 -12.23833 -11.96011 -11.77054 -11.66520 -11.46819 -11.42590 -11.22625 -11.02161 -10.60150 -10.45181 -10.30175 -9.81918 -9.65908 -9.35381 -9.32586 -8.41449 -7.54479 -7.36279 -7.17606 -4.81779 1.63582 2.68611 2.80450 2.82869 2.88905 2.91578 3.39924 3.44739 3.59770 3.81503 4.29977 4.61846 4.69845 4.88785 5.03841 5.05143 5.20941 5.40248 5.59006 5.72705 5.82538 5.91026 5.95557 6.09865 6.47523 6.50287 6.87691 6.90328 6.97914 7.13513 7.22965 7.35037 7.37029 7.45513 7.95674 8.16923 8.24555 9.48007 9.51014 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.005024 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.279877 B = 5571.451009 C = 6778.807196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 N -0.683 5.683 4 C 0.162 3.838 5 C 0.172 3.828 6 N -0.438 5.438 7 O 0.050 5.950 8 C 0.321 3.679 9 C -0.347 4.347 10 S 0.033 5.967 11 C -0.206 4.206 12 C -0.108 4.108 13 C 0.132 3.868 14 C -0.366 4.366 15 H 0.104 0.896 16 C 0.069 3.931 17 N -0.754 5.754 18 Si 0.927 3.073 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.251 1.251 22 N -0.546 5.546 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.344 0.656 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 -4.620 -1.022 6.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 N -0.316 5.316 4 C 0.031 3.969 5 C -0.102 4.102 6 N -0.161 5.161 7 O -0.001 6.001 8 C 0.120 3.880 9 C -0.467 4.467 10 S 0.289 5.711 11 C -0.341 4.341 12 C -0.141 4.141 13 C 0.120 3.880 14 C -0.397 4.397 15 H 0.121 0.879 16 C -0.157 4.157 17 N -0.376 5.376 18 Si 0.749 3.251 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.174 1.174 22 N -0.284 5.284 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.262 -6.003 0.368 7.371 hybrid contribution 0.752 1.261 -2.598 2.984 sum -3.510 -4.742 -2.230 6.307 Atomic orbital electron populations 1.21760 0.94866 1.01519 1.02607 1.21915 0.95804 0.89118 1.00513 1.60381 1.06969 1.13603 1.50615 1.19871 0.87704 0.87457 1.01821 1.25002 1.00950 0.98861 0.85383 1.74359 1.23760 0.93646 1.24346 1.85425 1.65014 1.25201 1.24471 1.23418 0.91552 0.92591 0.80461 1.19248 1.39233 0.94444 0.93807 1.83268 1.75514 1.09535 1.02765 1.25243 1.08767 0.99310 1.00749 1.21520 1.00522 1.01275 0.90774 1.18102 0.87928 0.88233 0.93770 1.19919 1.17333 1.09916 0.92535 0.87858 1.26372 0.93083 0.94115 1.02090 1.69695 1.13278 1.16887 1.37772 0.85941 0.79129 0.80397 0.79653 1.18401 1.19459 1.17396 1.72276 1.26936 1.01678 1.27503 0.92215 0.91642 0.92868 0.95392 0.90787 0.83827 0.93359 0.88703 0.83882 0.83433 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.17 37.16 0.38 -1.11 16 2 C 0.06 0.64 6.41 -3.82 -0.02 0.61 16 3 N -0.68 -10.36 6.49 -115.06 -0.75 -11.11 16 4 C 0.16 2.70 6.31 -4.98 -0.03 2.67 16 5 C 0.17 3.77 7.70 -156.68 -1.21 2.57 16 6 N -0.44 -10.21 12.14 31.38 0.38 -9.82 16 7 O 0.05 1.24 9.18 15.66 0.14 1.39 16 8 C 0.32 8.19 7.88 -16.02 -0.13 8.06 16 9 C -0.35 -8.72 6.34 -37.67 -0.24 -8.96 16 10 S 0.03 0.74 23.16 -107.50 -2.49 -1.75 16 11 C -0.21 -4.24 11.05 28.83 0.32 -3.92 16 12 C -0.11 -2.44 9.04 -39.11 -0.35 -2.79 16 13 C 0.13 3.27 5.69 -106.17 -0.60 2.67 16 14 C -0.37 -8.79 8.65 -38.06 -0.33 -9.12 16 15 H 0.10 2.51 6.13 -52.48 -0.32 2.19 16 16 C 0.07 1.49 5.39 -17.29 -0.09 1.39 16 17 N -0.75 -16.29 10.78 55.56 0.60 -15.69 16 18 Si 0.93 16.40 29.57 -169.99 -5.03 11.37 16 19 H -0.26 -4.47 7.11 56.52 0.40 -4.07 16 20 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 21 H -0.25 -4.59 7.11 56.52 0.40 -4.19 16 22 N -0.55 -13.37 11.57 -11.43 -0.13 -13.50 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.34 5.23 8.72 -39.29 -0.34 4.88 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.14 2.44 8.06 -52.49 -0.42 2.01 16 32 H 0.15 3.23 6.36 -52.48 -0.33 2.90 16 33 H 0.30 5.64 8.29 -40.82 -0.34 5.30 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -27.03 303.41 -8.52 -35.56 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.51 Total: 6.91 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.31 Total: -7.93 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.10 Total: -50.12 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.14 Total: 1.39 kcal Atomic # 14 Polarization: 16.40 SS G_CDS: -5.03 Total: 11.37 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.75 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.03 -8.52 -35.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872171464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.909 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds