Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46494 * 109.47269 * 2 1 4 4 C 1.46505 * 119.99819 * 269.99527 * 3 2 1 5 5 C 1.50704 * 109.47143 * 270.00043 * 4 3 2 6 6 H 1.08002 * 119.99946 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99904 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99964 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99774 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47146 * 60.00451 * 9 7 5 11 11 H 1.48499 * 109.47003 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47309 * 300.00213 * 9 7 5 13 13 C 1.34775 * 120.00712 * 89.99843 * 3 2 1 14 14 O 1.21582 * 120.00236 * 180.02562 * 13 3 2 15 15 N 1.34778 * 119.99376 * 359.97438 * 13 3 2 16 16 C 1.38811 * 119.99491 * 180.02562 * 15 13 3 17 17 S 1.70437 * 124.65029 * 359.97240 * 16 15 13 18 18 C 1.75469 * 92.52516 * 180.02562 * 17 16 15 19 19 C 1.32596 * 110.78672 * 0.02562 * 18 17 16 20 20 C 1.36995 * 124.64434 * 179.97438 * 16 15 13 21 21 C 1.43200 * 123.58350 * 0.02562 * 20 16 15 22 22 N 5.23272 * 86.44215 * 100.06536 * 2 1 3 23 23 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47668 * 300.00738 * 1 2 3 25 25 H 1.09002 * 109.46899 * 60.00731 * 1 2 3 26 26 H 1.08998 * 109.47809 * 239.98960 * 2 1 3 27 27 H 1.09002 * 109.46899 * 119.99269 * 2 1 3 28 28 H 1.08999 * 109.47173 * 29.99732 * 4 3 2 29 29 H 1.08995 * 109.47171 * 149.99844 * 4 3 2 30 30 H 0.97000 * 119.99860 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00126 * 0.02562 * 15 13 3 32 32 H 1.08003 * 124.60374 * 179.73004 * 18 17 16 33 33 H 1.07995 * 123.42185 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7037 6 1 4.3429 1.2307 -1.0956 7 6 4.1493 2.3894 -2.8780 8 7 3.3493 3.1254 -3.6182 9 14 5.9137 2.0963 -3.4167 10 1 6.1419 0.6396 -3.5934 11 1 6.1609 2.7952 -4.7035 12 1 6.8408 2.6206 -2.3820 13 6 2.2429 2.0166 1.1671 14 8 2.6478 3.1631 1.1670 15 7 2.0178 1.3815 2.3343 16 6 2.2486 2.0361 3.5364 17 16 2.8155 3.6375 3.6744 18 6 2.7934 3.5765 5.4279 19 6 2.3746 2.3922 5.8523 20 6 2.0521 1.4835 4.7744 21 6 1.5795 0.1474 4.9795 22 7 1.2052 -0.9128 5.1423 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3635 0.5140 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5140 -0.8898 27 1 1.8932 -0.5137 0.8901 28 1 1.5818 1.6875 -2.0285 29 1 2.0956 3.1409 -1.1385 30 1 3.6752 3.5152 -4.4444 31 1 1.6944 0.4670 2.3344 32 1 3.0861 4.3913 6.0737 33 1 2.2830 2.1329 6.8966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931843438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 36.425241 kcal Electronic energy + Delta-G solvation = -18998.535508 eV Core-core repulsion = 15958.564637 eV Total energy + Delta-G solvation = -3039.970870 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37316 -38.10394 -35.95645 -35.70464 -34.52763 -32.80198 -30.37152 -29.10315 -27.09517 -24.76920 -23.26469 -22.95704 -21.24255 -20.01583 -18.94279 -17.60592 -16.60615 -16.27100 -15.73954 -15.32453 -14.75320 -14.39793 -14.14340 -14.12517 -13.88414 -13.43263 -13.13879 -12.89998 -12.61896 -12.30263 -12.20179 -11.93270 -11.84458 -11.35084 -11.08664 -11.02664 -10.83712 -10.74239 -10.65096 -10.20389 -9.81170 -9.50561 -8.52651 -8.38236 -8.16588 -7.79385 -6.14321 -4.19908 0.89516 1.37936 2.03396 2.09789 2.74833 2.79657 3.26906 3.31688 3.32754 3.37179 3.62372 4.07342 4.20840 4.38224 4.98445 5.08611 5.19820 5.21215 5.38609 5.50371 5.69773 5.82058 5.97287 6.03111 6.18039 6.30136 6.33928 6.43793 7.08993 7.22977 7.37042 7.57946 7.80876 8.08491 8.17195 8.68054 8.86297 9.45633 10.93610 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.005187 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.387438 B = 5397.287016 C = 6141.801679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.259 3.741 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.689 3.311 14 O -0.546 6.546 15 N -0.652 5.652 16 C 0.104 3.896 17 S 0.335 5.665 18 C -0.303 4.303 19 C -0.069 4.069 20 C -0.160 4.160 21 C 0.285 3.715 22 N -0.444 5.444 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.265 0.735 31 H 0.411 0.589 32 H 0.167 0.833 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -1.314 13.612 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.572 4.572 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.391 3.609 14 O -0.423 6.423 15 N -0.299 5.299 16 C -0.121 4.121 17 S 0.595 5.405 18 C -0.439 4.439 19 C -0.099 4.099 20 C -0.181 4.181 21 C -0.030 4.030 22 N -0.121 5.121 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.249 0.751 32 H 0.184 0.816 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.576 -0.934 12.448 12.985 hybrid contribution 0.511 -1.586 0.644 1.787 sum -3.064 -2.520 13.092 13.680 Atomic orbital electron populations 1.22254 0.96147 1.01962 1.02701 1.21487 0.93982 0.83802 1.02929 1.47657 1.65658 1.13450 1.05886 1.19370 0.96635 0.93580 0.76372 1.21366 0.96745 1.32517 1.06547 0.92430 1.24904 0.97942 0.94724 0.96232 1.69909 1.35807 1.33066 1.14323 0.86541 0.84597 0.78298 0.77902 1.20266 1.21099 1.20075 1.16040 0.79790 0.84977 0.80130 1.90822 1.51653 1.16145 1.83659 1.42521 1.67405 1.17456 1.02477 1.22049 1.01164 1.01362 0.87511 1.84762 1.59212 1.00929 0.95556 1.26022 1.12275 1.02386 1.03169 1.20488 0.99858 0.91534 0.98034 1.15920 1.20607 0.90442 0.91180 1.24996 0.92405 0.91850 0.93777 1.81244 1.12036 1.11663 1.07181 0.91692 0.93124 0.91395 0.88769 0.92479 0.94334 0.93327 0.92499 0.75079 0.81550 0.83903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.15 0.38 -1.82 16 2 C 0.10 1.54 5.89 -4.05 -0.02 1.52 16 3 N -0.59 -11.64 2.46 -180.81 -0.44 -12.08 16 4 C 0.26 6.28 5.16 -5.19 -0.03 6.25 16 5 C -0.53 -14.27 9.39 -34.44 -0.32 -14.60 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 9 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.69 13.36 8.24 -86.92 -0.72 12.64 16 14 O -0.55 -12.10 13.34 5.29 0.07 -12.03 16 15 N -0.65 -10.16 5.24 -16.00 -0.08 -10.24 16 16 C 0.10 1.51 6.98 -14.84 -0.10 1.40 16 17 S 0.34 4.53 19.96 -107.50 -2.15 2.39 16 18 C -0.30 -3.05 11.10 28.83 0.32 -2.73 16 19 C -0.07 -0.72 10.35 -38.97 -0.40 -1.13 16 20 C -0.16 -2.06 5.88 -105.91 -0.62 -2.68 16 21 C 0.28 3.94 14.98 -22.47 -0.34 3.60 16 22 N -0.44 -6.76 18.54 41.84 0.78 -5.99 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 27 H 0.06 0.74 6.36 -51.93 -0.33 0.41 16 28 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.41 5.66 5.88 -40.82 -0.24 5.42 16 32 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -30.27 309.80 -6.85 -37.12 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.45 Total: 0.58 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.95 Total: 4.12 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.98 Total: -52.88 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -2.15 Total: 2.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.27 -6.85 -37.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931843438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.541 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds