Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46494 * 109.47269 * 2 1 4 4 C 1.46505 * 119.99819 * 269.99527 * 3 2 1 5 5 C 1.50704 * 109.47143 * 270.00043 * 4 3 2 6 6 H 1.08002 * 119.99946 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99904 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99964 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99774 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47146 * 60.00451 * 9 7 5 11 11 H 1.48499 * 109.47003 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47309 * 300.00213 * 9 7 5 13 13 C 1.34775 * 120.00712 * 89.99843 * 3 2 1 14 14 O 1.21582 * 120.00236 * 180.02562 * 13 3 2 15 15 N 1.34778 * 119.99376 * 359.97438 * 13 3 2 16 16 C 1.38811 * 119.99491 * 180.02562 * 15 13 3 17 17 S 1.70437 * 124.65029 * 359.97240 * 16 15 13 18 18 C 1.75469 * 92.52516 * 180.02562 * 17 16 15 19 19 C 1.32596 * 110.78672 * 0.02562 * 18 17 16 20 20 C 1.36995 * 124.64434 * 179.97438 * 16 15 13 21 21 C 1.43200 * 123.58350 * 0.02562 * 20 16 15 22 22 N 5.23272 * 86.44215 * 100.06536 * 2 1 3 23 23 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47668 * 300.00738 * 1 2 3 25 25 H 1.09002 * 109.46899 * 60.00731 * 1 2 3 26 26 H 1.08998 * 109.47809 * 239.98960 * 2 1 3 27 27 H 1.09002 * 109.46899 * 119.99269 * 2 1 3 28 28 H 1.08999 * 109.47173 * 29.99732 * 4 3 2 29 29 H 1.08995 * 109.47171 * 149.99844 * 4 3 2 30 30 H 0.97000 * 119.99860 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00126 * 0.02562 * 15 13 3 32 32 H 1.08003 * 124.60374 * 179.73004 * 18 17 16 33 33 H 1.07995 * 123.42185 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7037 6 1 4.3429 1.2307 -1.0956 7 6 4.1493 2.3894 -2.8780 8 7 3.3493 3.1254 -3.6182 9 14 5.9137 2.0963 -3.4167 10 1 6.1419 0.6396 -3.5934 11 1 6.1609 2.7952 -4.7035 12 1 6.8408 2.6206 -2.3820 13 6 2.2429 2.0166 1.1671 14 8 2.6478 3.1631 1.1670 15 7 2.0178 1.3815 2.3343 16 6 2.2486 2.0361 3.5364 17 16 2.8155 3.6375 3.6744 18 6 2.7934 3.5765 5.4279 19 6 2.3746 2.3922 5.8523 20 6 2.0521 1.4835 4.7744 21 6 1.5795 0.1474 4.9795 22 7 1.2052 -0.9128 5.1423 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3635 0.5140 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5140 -0.8898 27 1 1.8932 -0.5137 0.8901 28 1 1.5818 1.6875 -2.0285 29 1 2.0956 3.1409 -1.1385 30 1 3.6752 3.5152 -4.4444 31 1 1.6944 0.4670 2.3344 32 1 3.0861 4.3913 6.0737 33 1 2.2830 2.1329 6.8966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931843438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 18.536708 kcal Electronic energy + Delta-G solvation = -18999.311213 eV Core-core repulsion = 15958.564637 eV Total energy + Delta-G solvation = -3040.746575 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77702 -39.22904 -37.36128 -36.93754 -35.82566 -34.74084 -31.76669 -30.31696 -28.77000 -26.03446 -24.83239 -24.37702 -22.30208 -21.30397 -20.15845 -19.00317 -18.57355 -17.44072 -17.19271 -16.79372 -16.34675 -15.68760 -15.43681 -15.17477 -15.08571 -14.75451 -14.47950 -14.22352 -13.84203 -13.67838 -13.51955 -13.31075 -13.13964 -12.89484 -12.73310 -12.55720 -12.27708 -12.20169 -11.94921 -11.83090 -11.74422 -10.83889 -10.62019 -9.75596 -9.32760 -9.02574 -8.21196 -6.35331 -0.19675 0.34469 1.06645 1.14507 1.39819 1.42688 1.48237 1.52859 1.68478 1.94242 2.39087 2.49460 2.75584 3.09543 3.11410 3.89005 4.02409 4.22896 4.31838 4.40629 4.70161 4.84015 4.85533 4.92854 5.01535 5.16277 5.25834 5.26811 5.38024 5.47308 5.61974 5.81963 6.04432 6.47167 6.70158 6.71578 7.21664 7.37893 8.85357 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.005187 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.387438 B = 5397.287016 C = 6141.801679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.277 3.723 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.924 5.924 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.688 3.312 14 O -0.583 6.583 15 N -0.642 5.642 16 C 0.076 3.924 17 S 0.287 5.713 18 C -0.269 4.269 19 C -0.071 4.071 20 C -0.143 4.143 21 C 0.297 3.703 22 N -0.465 5.465 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.010 0.990 30 H 0.268 0.732 31 H 0.418 0.582 32 H 0.203 0.797 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -2.181 15.706 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.157 3.843 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.389 3.611 14 O -0.462 6.462 15 N -0.290 5.290 16 C -0.148 4.148 17 S 0.548 5.452 18 C -0.404 4.404 19 C -0.100 4.100 20 C -0.166 4.166 21 C -0.017 4.017 22 N -0.143 5.143 23 H 0.114 0.886 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.220 0.780 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.120 -1.838 14.591 15.033 hybrid contribution 0.331 -1.301 0.150 1.350 sum -2.789 -3.139 14.741 15.327 Atomic orbital electron populations 1.22179 0.94222 1.03721 1.02026 1.21739 0.95540 0.81422 1.03824 1.47497 1.66280 1.14983 1.04738 1.18789 0.95448 0.91817 0.78287 1.21643 0.97806 1.32305 1.06626 0.92970 1.25731 1.01957 0.94428 0.96345 1.70019 1.37644 1.33938 1.14748 0.85543 0.79530 0.78767 0.77427 1.18971 1.20427 1.20237 1.16089 0.79457 0.84647 0.80871 1.90806 1.53020 1.17704 1.84670 1.42116 1.67466 1.17560 1.01833 1.22181 1.03421 1.01813 0.87344 1.84954 1.59667 1.01314 0.99244 1.26249 1.10382 1.03200 1.00584 1.20824 0.99457 0.90855 0.98869 1.16185 1.18960 0.90136 0.91301 1.25062 0.91866 0.91782 0.93031 1.81265 1.12665 1.12321 1.08062 0.88622 0.92969 0.92882 0.89315 0.90088 0.95071 0.97151 0.92340 0.74162 0.77998 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.10 2.90 5.89 86.38 0.51 3.41 16 3 N -0.60 -24.21 2.46 -844.22 -2.07 -26.28 16 4 C 0.28 14.04 5.16 85.63 0.44 14.48 16 5 C -0.55 -29.92 9.39 25.60 0.24 -29.68 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.02 0.84 5.46 84.66 0.46 1.30 16 8 N -0.92 -53.58 13.29 21.45 0.28 -53.30 16 9 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.69 27.30 8.24 179.05 1.48 28.78 16 14 O -0.58 -26.91 13.34 -3.97 -0.05 -26.96 16 15 N -0.64 -19.83 5.24 -322.79 -1.69 -21.52 16 16 C 0.08 2.11 6.98 83.29 0.58 2.70 16 17 S 0.29 7.59 19.96 -56.49 -1.13 6.47 16 18 C -0.27 -4.51 11.10 66.66 0.74 -3.77 16 19 C -0.07 -1.22 10.35 22.74 0.24 -0.99 16 20 C -0.14 -3.36 5.88 -20.70 -0.12 -3.48 16 21 C 0.30 7.57 14.98 88.33 1.32 8.89 16 22 N -0.47 -13.27 18.54 19.00 0.35 -12.92 16 23 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 2.73 8.07 -2.39 -0.02 2.71 16 27 H 0.08 2.01 6.36 -2.39 -0.02 1.99 16 28 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 29 H 0.01 0.60 7.42 -2.39 -0.02 0.58 16 30 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.42 11.14 5.88 -92.71 -0.55 10.60 16 32 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -67.09 309.80 4.95 -62.14 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.61 Total: 8.59 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.62 Total: 18.34 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -3.13 Total: -114.02 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.96 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 7.59 SS G_CDS: -1.13 Total: 6.47 kcal Total: -67.09 4.95 -62.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931843438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.674 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds