Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00130 * 2 1 4 4 H 1.48506 * 109.47026 * 269.99855 * 3 2 1 5 5 H 1.48502 * 109.46847 * 29.99293 * 3 2 1 6 6 H 1.48493 * 109.47524 * 149.99757 * 3 2 1 7 7 C 1.37877 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00324 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47585 * 179.97438 * 9 7 2 11 11 O 1.21254 * 119.99562 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00391 * 179.97438 * 10 9 7 13 13 C 1.38145 * 120.00041 * 179.97438 * 12 10 9 14 14 N 1.33255 * 120.32487 * 359.97438 * 13 12 10 15 15 C 1.31658 * 121.91239 * 180.02562 * 14 13 12 16 16 O 1.34859 * 118.94800 * 179.97438 * 15 14 13 17 17 N 1.34986 * 122.10352 * 0.25740 * 15 14 13 18 18 H 0.97002 * 120.17909 * 179.74459 * 17 15 14 19 19 C 1.37766 * 119.63787 * 359.49181 * 17 15 14 20 20 N 1.32529 * 134.92013 * 180.18559 * 19 17 15 21 21 C 1.33153 * 108.86476 * 180.28069 * 20 19 17 22 22 O 1.35777 * 124.95901 * 179.97438 * 21 20 19 23 23 N 1.31969 * 110.08828 * 0.02562 * 21 20 19 24 24 C 1.35245 * 108.01591 * 359.97438 * 23 21 20 25 25 H 0.96995 * 120.00251 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47547 * 59.99835 * 9 7 2 27 27 H 1.09005 * 109.47429 * 299.99613 * 9 7 2 28 28 H 0.96998 * 120.00035 * 359.97438 * 12 10 9 29 29 H 0.96700 * 117.00381 * 90.00012 * 16 15 14 30 30 H 0.96707 * 113.99892 * 270.02511 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4225 -3.4230 0.0001 12 7 1.7811 -4.9152 0.0011 13 6 2.6789 -5.9652 0.0005 14 7 3.9903 -5.7292 -0.0010 15 6 4.8733 -6.7058 -0.0021 16 8 6.1864 -6.3985 -0.0042 17 7 4.5062 -8.0048 -0.0068 18 1 5.1806 -8.7020 -0.0112 19 6 3.1687 -8.3348 0.0000 20 7 2.4849 -9.4701 0.0012 21 6 1.1834 -9.1888 0.0030 22 8 0.1879 -10.1121 0.0041 23 7 1.0022 -7.8816 0.0024 24 6 2.2187 -7.2906 0.0007 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8896 27 1 0.6241 -2.5568 0.8903 28 1 0.8275 -5.0925 0.0018 29 1 6.6152 -6.2983 0.8567 30 1 -0.1013 -10.3797 -0.8791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143202360.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = -16.718543 kcal Electronic energy + Delta-G solvation = -20818.129942 eV Core-core repulsion = 17229.561370 eV Total energy + Delta-G solvation = -3588.568572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.080 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.69353 -41.48165 -40.93160 -38.58662 -37.58935 -36.94318 -35.14384 -34.73983 -32.19384 -31.27559 -29.91606 -26.57575 -25.25308 -24.83488 -22.77291 -22.13023 -20.84141 -20.22245 -19.14128 -18.72546 -18.38248 -18.35144 -17.96685 -17.26932 -17.00376 -16.52688 -16.36981 -16.28320 -15.21212 -14.92372 -14.22969 -14.01707 -13.59022 -13.51052 -13.12814 -13.10214 -12.82569 -12.57483 -12.14957 -12.02240 -11.91735 -11.47454 -11.30728 -10.62209 -10.61698 -10.54973 -10.28587 -9.26516 -8.24960 -6.33091 -1.30394 0.15426 0.52308 1.37180 1.44774 1.46091 1.50810 1.57973 1.84259 2.14505 2.26787 2.44690 2.62623 2.90679 3.11923 3.37624 3.43489 3.98311 4.19176 4.76471 5.00555 5.03452 5.18201 5.22233 5.41975 5.68380 5.69445 5.75605 6.04683 6.30619 6.44819 6.77924 6.79303 6.98062 7.02806 7.36670 8.86940 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.004323 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.919664 B = 6475.541222 C = 7613.414653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.010 3.990 10 C 0.512 3.488 11 O -0.480 6.480 12 N -0.627 5.627 13 C 0.541 3.459 14 N -0.541 5.541 15 C 0.634 3.366 16 O -0.441 6.441 17 N -0.517 5.517 18 H 0.446 0.554 19 C 0.264 3.736 20 N -0.553 5.553 21 C 0.388 3.612 22 O -0.451 6.451 23 N -0.521 5.521 24 C -0.121 4.121 25 H 0.268 0.732 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.441 0.559 29 H 0.463 0.537 30 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.210 -16.246 0.122 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.083 0.917 9 C -0.029 4.029 10 C 0.302 3.698 11 O -0.348 6.348 12 N -0.269 5.269 13 C 0.299 3.701 14 N -0.280 5.280 15 C 0.332 3.668 16 O -0.252 6.252 17 N -0.142 5.142 18 H 0.289 0.711 19 C 0.010 3.990 20 N -0.289 5.289 21 C 0.079 3.921 22 O -0.254 6.254 23 N -0.253 5.253 24 C -0.257 4.257 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.282 0.718 29 H 0.334 0.666 30 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 10.493 -15.440 0.189 18.669 hybrid contribution -0.059 -0.160 -0.087 0.191 sum 10.434 -15.600 0.102 18.768 Atomic orbital electron populations 1.70027 1.07229 1.28237 1.50804 1.25762 0.95758 1.02761 0.94383 0.85438 0.78570 0.78533 0.78473 1.19873 1.20378 1.19423 1.21323 0.93937 0.90537 1.51676 0.91749 1.19189 0.94056 0.89681 0.99996 1.22197 0.91174 0.82912 0.73558 1.90649 1.17792 1.83556 1.42833 1.44347 1.11274 1.04561 1.66766 1.18085 0.86772 0.84569 0.80636 1.68306 0.99955 1.30572 1.29150 1.19484 0.86638 0.77467 0.83242 1.84222 1.12345 1.89072 1.39519 1.42056 1.06035 1.09016 1.57133 0.71075 1.18916 0.83909 0.91808 1.04392 1.69878 1.04658 1.26180 1.28203 1.20444 0.84526 0.85155 1.02013 1.84787 1.49060 1.56048 1.35504 1.70781 1.23668 1.07258 1.23610 1.19917 0.92612 0.92491 1.20666 0.92351 0.92907 0.92824 0.71817 0.66592 0.72263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.87 13.29 21.45 0.28 -51.59 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.54 -29.29 8.92 25.60 0.23 -29.06 16 8 H 0.06 3.63 6.75 -2.91 -0.02 3.61 16 9 C 0.01 0.48 5.46 29.10 0.16 0.64 16 10 C 0.51 21.43 7.78 87.66 0.68 22.11 16 11 O -0.48 -22.19 13.71 -2.95 -0.04 -22.23 16 12 N -0.63 -21.49 5.35 -307.86 -1.65 -23.13 16 13 C 0.54 17.36 7.47 133.38 1.00 18.35 16 14 N -0.54 -15.82 7.91 -310.19 -2.46 -18.27 16 15 C 0.63 11.58 8.81 179.94 1.59 13.16 16 16 O -0.44 -4.26 13.49 -81.26 -1.10 -5.35 16 17 N -0.52 -8.43 5.38 -308.61 -1.66 -10.09 16 18 H 0.45 3.51 8.93 -92.71 -0.83 2.68 16 19 C 0.26 7.14 8.53 133.94 1.14 8.28 16 20 N -0.55 -16.91 11.32 -309.45 -3.50 -20.42 16 21 C 0.39 12.61 9.32 180.42 1.68 14.30 16 22 O -0.45 -12.17 13.65 -91.06 -1.24 -13.41 16 23 N -0.52 -18.01 11.44 -306.21 -3.50 -21.51 16 24 C -0.12 -3.86 7.17 39.84 0.29 -3.57 16 25 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.05 2.57 8.14 -2.38 -0.02 2.56 16 28 H 0.44 13.54 8.70 -92.71 -0.81 12.73 16 29 H 0.46 -1.17 9.15 -74.06 -0.68 -1.85 16 30 H 0.42 6.58 9.06 -74.05 -0.67 5.91 16 Total: -1.00 -80.29 282.54 -7.31 -87.60 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -1.69 Total: 8.02 kcal Atomic # 6 Polarization: 38.14 SS G_CDS: 7.22 Total: 45.36 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -12.49 Total: -145.01 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -2.38 Total: -41.00 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -80.29 -7.31 -87.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202360.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.880 kcal (2) G-P(sol) polarization free energy of solvation -80.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds