Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47088 * 60.00147 * 8 6 4 10 10 H 1.48496 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47600 * 300.00319 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.46498 * 120.00313 * 300.00170 * 12 2 1 14 14 C 1.34776 * 119.99384 * 120.00492 * 12 2 1 15 15 O 1.21581 * 120.00827 * 359.97438 * 14 12 2 16 16 N 1.34784 * 119.99593 * 180.02562 * 14 12 2 17 17 C 1.38807 * 119.99842 * 179.97438 * 16 14 12 18 18 S 1.70439 * 124.64777 * 0.02562 * 17 16 14 19 19 C 1.75469 * 92.52314 * 179.97438 * 18 17 16 20 20 C 1.32590 * 110.78636 * 0.02562 * 19 18 17 21 21 C 1.36994 * 124.64341 * 179.72021 * 17 16 14 22 22 C 1.43193 * 123.58670 * 0.02562 * 21 17 16 23 23 N 7.15024 * 111.40948 * 243.38396 * 2 1 3 24 24 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.46845 * 89.99642 * 13 12 2 29 29 H 1.08995 * 109.46810 * 210.00303 * 13 12 2 30 30 H 1.09005 * 109.46841 * 330.00094 * 13 12 2 31 31 H 0.96999 * 119.99879 * 359.97438 * 16 14 12 32 32 H 1.08004 * 124.60989 * 179.97438 * 19 18 17 33 33 H 1.08002 * 123.42576 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8269 -0.4199 5.2204 11 1 1.8258 -2.5203 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7933 -0.0356 -2.0833 15 8 3.0867 1.1285 -1.8911 16 7 3.2421 -0.6708 -3.1840 17 6 4.0398 0.0039 -4.0979 18 16 4.5231 1.6313 -3.9463 19 6 5.4266 1.5839 -5.4498 20 6 5.3447 0.3852 -6.0104 21 6 4.5513 -0.5487 -5.2423 22 6 4.3212 -1.9055 -5.6383 23 7 4.1401 -2.9823 -5.9514 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7090 1.1613 3.4844 28 1 0.7376 -2.1443 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 3.0077 -1.5995 -3.3376 32 1 5.9743 2.4181 -5.8629 33 1 5.8259 0.1305 -6.9432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334449221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 41.286363 kcal Electronic energy + Delta-G solvation = -19010.317031 eV Core-core repulsion = 15970.556955 eV Total energy + Delta-G solvation = -3039.760076 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36991 -38.13759 -36.01907 -35.70263 -34.55452 -32.90083 -29.81946 -28.51783 -26.46060 -25.34701 -24.73114 -22.06050 -21.14493 -19.71268 -18.89459 -17.65584 -16.57047 -16.23068 -15.66639 -15.47238 -14.84832 -14.43082 -14.17544 -14.10523 -13.47489 -13.16523 -13.08019 -12.72653 -12.64140 -12.32411 -11.98199 -11.81210 -11.64822 -11.20819 -11.00164 -10.96146 -10.81570 -10.73639 -10.35958 -10.26418 -9.58743 -9.32625 -8.54364 -8.38833 -8.16741 -7.75531 -6.18499 -4.27342 0.87310 1.35630 2.01821 2.07552 2.73931 2.77672 3.21966 3.27787 3.28549 3.32921 3.60170 4.11485 4.21470 4.33208 4.98161 5.13436 5.18998 5.37606 5.67521 5.76927 5.95312 6.07983 6.18276 6.31520 6.41628 6.64740 6.79358 6.92703 7.18931 7.46600 7.56834 7.59316 7.87707 8.02690 8.28165 8.62379 8.80140 9.39407 10.86808 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.004635 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.448668 B = 6040.107736 C = 6476.650019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.271 3.729 3 H 0.069 0.931 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.078 3.922 14 C 0.687 3.313 15 O -0.557 6.557 16 N -0.651 5.651 17 C 0.104 3.896 18 S 0.334 5.666 19 C -0.302 4.302 20 C -0.069 4.069 21 C -0.159 4.159 22 C 0.284 3.716 23 N -0.443 5.443 24 H 0.097 0.903 25 H 0.013 0.987 26 H 0.031 0.969 27 H 0.266 0.734 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.412 0.588 32 H 0.167 0.833 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 0.284 -12.578 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.087 0.913 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.322 5.322 13 C -0.066 4.066 14 C 0.389 3.611 15 O -0.435 6.435 16 N -0.298 5.298 17 C -0.121 4.121 18 S 0.594 5.406 19 C -0.438 4.438 20 C -0.099 4.099 21 C -0.180 4.180 22 C -0.031 4.031 23 N -0.120 5.120 24 H 0.115 0.885 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.250 0.750 32 H 0.185 0.815 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.462 0.657 -11.544 12.394 hybrid contribution 0.485 -1.985 -0.252 2.059 sum 4.947 -1.329 -11.796 12.860 Atomic orbital electron populations 1.22118 0.97788 0.99635 1.01092 1.19050 0.90967 0.94363 0.78440 0.91334 1.21238 1.32400 1.13329 0.90137 0.92208 1.24864 0.94770 0.94923 0.98956 1.69855 1.35917 1.22368 1.24127 0.86518 0.79282 0.79554 0.81831 1.20180 1.21062 1.20209 1.47678 1.49597 1.11735 1.23239 1.21671 0.98676 0.82955 1.03322 1.16093 0.80370 0.85152 0.79524 1.90798 1.62300 1.14945 1.75469 1.42495 1.50338 1.15708 1.21225 1.22044 0.96543 1.01265 0.92238 1.84708 1.41741 0.98820 1.15363 1.26013 1.10940 1.02100 1.04740 1.20495 0.98435 0.91144 0.99824 1.15923 1.14111 0.89289 0.98708 1.24987 0.92875 0.91832 0.93375 1.81247 1.10503 1.11646 1.08644 0.88474 0.96815 0.95027 0.92434 0.93148 0.93485 0.88886 0.74968 0.81531 0.83874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.97 37.16 0.33 -2.98 16 2 C 0.27 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -13.57 7.99 -34.44 -0.28 -13.85 16 5 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -23.82 11.32 55.43 0.63 -23.20 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.59 -11.70 2.75 -181.00 -0.50 -12.20 16 13 C 0.08 1.22 9.20 59.85 0.55 1.77 16 14 C 0.69 13.20 8.24 -86.91 -0.72 12.48 16 15 O -0.56 -12.01 13.09 5.29 0.07 -11.94 16 16 N -0.65 -10.07 5.24 -16.00 -0.08 -10.15 16 17 C 0.10 1.48 6.98 -14.84 -0.10 1.38 16 18 S 0.33 4.39 19.96 -107.50 -2.15 2.24 16 19 C -0.30 -2.97 11.10 28.83 0.32 -2.65 16 20 C -0.07 -0.71 10.35 -38.97 -0.40 -1.11 16 21 C -0.16 -2.02 5.88 -105.91 -0.62 -2.65 16 22 C 0.28 3.92 14.98 -22.48 -0.34 3.59 16 23 N -0.44 -6.77 18.54 41.84 0.78 -6.00 16 24 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.61 6.36 -51.93 -0.33 0.28 16 30 H 0.09 1.55 7.02 -51.93 -0.36 1.18 16 31 H 0.41 5.64 5.88 -40.82 -0.24 5.40 16 32 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 301.32 15.07 4.54 4.54 Total: -1.00 -28.66 301.32 -6.48 -35.14 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.22 Total: 2.43 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -1.53 Total: 3.93 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.82 Total: -51.55 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.07 Total: -11.94 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.15 Total: 2.24 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.66 -6.48 -35.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334449221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.427 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds