Wall clock time and date at job start Wed Apr 15 2020 11:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47097 * 120.00098 * 2 1 3 5 5 H 1.08001 * 120.00213 * 119.99401 * 4 2 1 6 6 C 1.37880 * 119.99755 * 300.00020 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47088 * 60.00147 * 8 6 4 10 10 H 1.48496 * 109.47117 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47600 * 300.00319 * 8 6 4 12 12 N 1.46506 * 109.47035 * 239.99826 * 2 1 3 13 13 C 1.46498 * 120.00313 * 300.00170 * 12 2 1 14 14 C 1.34776 * 119.99384 * 120.00492 * 12 2 1 15 15 O 1.21581 * 120.00827 * 359.97438 * 14 12 2 16 16 N 1.34784 * 119.99593 * 180.02562 * 14 12 2 17 17 C 1.38807 * 119.99842 * 179.97438 * 16 14 12 18 18 S 1.70439 * 124.64777 * 0.02562 * 17 16 14 19 19 C 1.75469 * 92.52314 * 179.97438 * 18 17 16 20 20 C 1.32590 * 110.78636 * 0.02562 * 19 18 17 21 21 C 1.36994 * 124.64341 * 179.72021 * 17 16 14 22 22 C 1.43193 * 123.58670 * 0.02562 * 21 17 16 23 23 N 7.15024 * 111.40948 * 243.38396 * 2 1 3 24 24 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 0.97003 * 119.99339 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.46845 * 89.99642 * 13 12 2 29 29 H 1.08995 * 109.46810 * 210.00303 * 13 12 2 30 30 H 1.09005 * 109.46841 * 330.00094 * 13 12 2 31 31 H 0.96999 * 119.99879 * 359.97438 * 16 14 12 32 32 H 1.08004 * 124.60989 * 179.97438 * 19 18 17 33 33 H 1.08002 * 123.42576 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0082 10 1 1.8269 -0.4199 5.2204 11 1 1.8258 -2.5203 4.0078 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7933 -0.0356 -2.0833 15 8 3.0867 1.1285 -1.8911 16 7 3.2421 -0.6708 -3.1840 17 6 4.0398 0.0039 -4.0979 18 16 4.5231 1.6313 -3.9463 19 6 5.4266 1.5839 -5.4498 20 6 5.3447 0.3852 -6.0104 21 6 4.5513 -0.5487 -5.2423 22 6 4.3212 -1.9055 -5.6383 23 7 4.1401 -2.9823 -5.9514 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7090 1.1613 3.4844 28 1 0.7376 -2.1443 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 3.0077 -1.5995 -3.3376 32 1 5.9743 2.4181 -5.8629 33 1 5.8259 0.1305 -6.9432 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334449221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:20 Heat of formation + Delta-G solvation = 24.570019 kcal Electronic energy + Delta-G solvation = -19011.041906 eV Core-core repulsion = 15970.556955 eV Total energy + Delta-G solvation = -3040.484951 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.76063 -39.25902 -37.52054 -36.92703 -35.83829 -34.68823 -31.48044 -29.67898 -27.81951 -27.29641 -25.86008 -23.58355 -22.18183 -21.14414 -20.12756 -19.04442 -18.35657 -17.47762 -17.15159 -16.90684 -16.35142 -15.75313 -15.29402 -15.11137 -15.04928 -14.53584 -14.28269 -14.23457 -13.72382 -13.56734 -13.50091 -13.21152 -13.01429 -12.83809 -12.75732 -12.65601 -12.26483 -12.16440 -11.95330 -11.90775 -11.23536 -10.86062 -10.51182 -9.66466 -9.31689 -9.00475 -8.14798 -6.30651 -0.19974 0.34490 1.06663 1.14477 1.43651 1.44806 1.50178 1.54541 1.68378 1.92208 2.41315 2.49270 2.81877 3.11432 3.14361 4.00921 4.16490 4.33740 4.55137 4.65883 4.84974 4.88934 4.89287 4.98415 5.04411 5.21706 5.29407 5.40658 5.44829 5.60701 5.80061 6.04124 6.14241 6.47214 6.71338 6.77383 7.21309 7.41827 8.89288 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025300 B = 0.004635 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.448668 B = 6040.107736 C = 6476.650019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.278 3.722 3 H 0.024 0.976 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.601 5.601 13 C 0.075 3.925 14 C 0.686 3.314 15 O -0.589 6.589 16 N -0.642 5.642 17 C 0.075 3.925 18 S 0.290 5.710 19 C -0.269 4.269 20 C -0.072 4.072 21 C -0.144 4.144 22 C 0.298 3.702 23 N -0.467 5.467 24 H 0.071 0.929 25 H 0.022 0.978 26 H 0.045 0.955 27 H 0.266 0.734 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.419 0.581 32 H 0.203 0.797 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 -0.611 -14.179 15.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.177 3.823 3 H 0.042 0.958 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.787 3.213 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.190 1.190 12 N -0.333 5.333 13 C -0.067 4.067 14 C 0.387 3.613 15 O -0.470 6.470 16 N -0.290 5.290 17 C -0.148 4.148 18 S 0.551 5.449 19 C -0.404 4.404 20 C -0.101 4.101 21 C -0.166 4.166 22 C -0.017 4.017 23 N -0.145 5.145 24 H 0.090 0.910 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.259 0.741 32 H 0.220 0.780 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.599 -0.267 -13.194 14.335 hybrid contribution 0.221 -1.662 0.095 1.680 sum 5.820 -1.930 -13.099 14.463 Atomic orbital electron populations 1.21906 0.96893 1.00185 1.00254 1.18602 0.91544 0.92369 0.79788 0.95840 1.21507 1.32227 1.13279 0.91030 0.92178 1.25625 0.94987 0.95566 1.01700 1.69989 1.36937 1.23584 1.24592 0.85564 0.78387 0.78918 0.78457 1.20382 1.20921 1.19050 1.47498 1.50112 1.13192 1.22536 1.21853 1.00680 0.80669 1.03512 1.16136 0.80145 0.84862 0.80181 1.90787 1.63275 1.16359 1.76529 1.42113 1.50504 1.15846 1.20489 1.22187 0.97986 1.01713 0.92887 1.84888 1.42845 0.99025 1.18129 1.26250 1.09119 1.03000 1.02029 1.20823 0.98064 0.90467 1.00707 1.16190 1.13295 0.89009 0.98108 1.25075 0.92174 0.91798 0.92651 1.81268 1.11270 1.12382 1.09570 0.91005 0.95872 0.93621 0.92521 0.91119 0.90846 0.89861 0.74080 0.77974 0.80652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.97 71.98 0.65 -5.45 16 2 C 0.28 13.62 2.64 44.25 0.12 13.73 16 3 H 0.02 1.36 6.90 -2.39 -0.02 1.34 16 4 C -0.54 -28.00 7.99 25.60 0.20 -27.80 16 5 H 0.06 3.03 7.33 -2.91 -0.02 3.01 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -50.27 11.32 21.45 0.24 -50.03 16 8 Si 0.96 41.58 29.54 68.60 2.03 43.61 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 12 N -0.60 -23.97 2.75 -844.83 -2.33 -26.30 16 13 C 0.08 2.28 9.20 127.77 1.18 3.46 16 14 C 0.69 26.64 8.24 179.05 1.48 28.12 16 15 O -0.59 -26.30 13.09 -3.97 -0.05 -26.35 16 16 N -0.64 -19.48 5.24 -322.78 -1.69 -21.17 16 17 C 0.08 2.07 6.98 83.30 0.58 2.65 16 18 S 0.29 7.40 19.96 -56.49 -1.13 6.27 16 19 C -0.27 -4.35 11.10 66.66 0.74 -3.61 16 20 C -0.07 -1.21 10.35 22.74 0.24 -0.97 16 21 C -0.14 -3.32 5.88 -20.70 -0.12 -3.44 16 22 C 0.30 7.57 14.98 88.33 1.32 8.90 16 23 N -0.47 -13.42 18.54 19.00 0.35 -13.07 16 24 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 25 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.04 1.89 7.67 -2.39 -0.02 1.88 16 27 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.80 6.36 -2.39 -0.02 1.78 16 30 H 0.08 2.69 7.02 -2.38 -0.02 2.67 16 31 H 0.42 10.97 5.88 -92.71 -0.55 10.43 16 32 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -63.30 301.32 4.87 -58.43 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.62 Total: 11.45 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.82 Total: 17.15 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -3.42 Total: -110.56 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 7.40 SS G_CDS: -1.13 Total: 6.27 kcal Total: -63.30 4.87 -58.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334449221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.003 kcal (2) G-P(sol) polarization free energy of solvation -63.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds