Wall clock time and date at job start Wed Apr 15 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46793 * 2 1 4 4 C 1.36881 * 126.39751 * 264.97407 * 3 2 1 5 5 C 1.34668 * 106.81875 * 180.02562 * 4 3 2 6 6 N 1.34134 * 108.01972 * 359.97438 * 5 4 3 7 7 C 1.30501 * 109.25535 * 0.02562 * 6 5 4 8 8 C 1.50692 * 125.64779 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47306 * 180.02562 * 8 7 6 10 10 C 1.47194 * 109.47384 * 300.02432 * 8 7 6 11 11 N 5.07300 * 120.74155 * 63.41057 * 2 1 3 12 12 C 1.50708 * 109.47228 * 60.02544 * 8 7 6 13 13 O 1.20753 * 119.99696 * 335.00297 * 12 8 7 14 14 C 1.50703 * 119.99849 * 154.99843 * 12 8 7 15 15 S 1.80997 * 109.46841 * 180.02562 * 14 12 8 16 16 C 1.76195 * 99.99870 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00490 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99846 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00120 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99786 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47167 * 89.99816 * 20 18 16 22 22 H 1.48507 * 109.46933 * 209.99581 * 20 18 16 23 23 H 1.48503 * 109.47233 * 329.99516 * 20 18 16 24 24 H 1.08997 * 109.47293 * 59.99744 * 1 2 3 25 25 H 1.09006 * 109.46762 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47082 * 299.99628 * 1 2 3 27 27 H 1.08996 * 109.47082 * 240.00372 * 2 1 3 28 28 H 1.08997 * 109.47293 * 120.00256 * 2 1 3 29 29 H 1.08003 * 126.59103 * 359.97438 * 4 3 2 30 30 H 1.08001 * 125.99672 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46894 * 300.00155 * 14 12 8 32 32 H 1.08992 * 109.47187 * 59.99942 * 14 12 8 33 33 H 0.97006 * 120.00235 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3800 2.1149 -1.0975 5 6 2.7661 3.3241 -0.6480 6 7 2.6430 3.3289 0.6877 7 6 2.1958 2.1684 1.0829 8 6 1.9228 1.7722 2.5109 9 1 1.5575 0.7457 2.5398 10 6 3.1650 1.8731 3.2941 11 7 4.1232 1.9516 3.8990 12 6 0.8831 2.6921 3.0975 13 8 0.7365 3.8028 2.6470 14 6 0.0262 2.2256 4.2461 15 16 -1.1166 3.5463 4.7214 16 6 -1.9693 2.7520 6.0430 17 1 -1.7112 1.7411 6.3220 18 6 -2.9737 3.4251 6.7247 19 7 -3.2888 4.6569 6.3843 20 14 -3.8773 2.5833 8.1263 21 1 -3.1707 2.8537 9.4040 22 1 -5.2643 3.1079 8.2069 23 1 -3.9154 1.1190 7.8819 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.3604 1.7867 -2.1263 30 1 3.1133 4.1463 -1.2562 31 1 -0.5415 1.3462 3.9422 32 1 0.6622 1.9722 5.0943 33 1 -3.9904 5.1275 6.8610 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520036875.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:26 Heat of formation + Delta-G solvation = 59.431468 kcal Electronic energy + Delta-G solvation = -18639.033414 eV Core-core repulsion = 15600.060169 eV Total energy + Delta-G solvation = -3038.973245 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.39366 -39.25111 -36.61186 -35.26437 -32.73773 -32.47988 -30.36984 -29.79904 -27.54803 -25.53561 -24.06535 -21.71715 -20.84568 -20.40040 -18.12687 -17.54459 -17.27659 -16.07515 -15.55393 -15.28961 -14.84943 -14.71758 -14.45298 -14.01394 -13.97539 -13.73529 -13.57894 -13.00575 -12.90773 -12.75375 -12.48589 -12.38112 -12.08195 -11.96180 -11.70040 -11.11064 -11.07617 -10.80576 -9.98889 -9.93117 -9.76009 -9.51150 -9.11535 -8.56029 -8.34813 -6.59796 -6.26964 -3.99390 1.72387 1.95828 2.27030 2.62906 2.74015 3.06475 3.12823 3.19832 3.26678 3.34721 3.76441 4.01864 4.14420 4.18408 4.25737 4.45945 4.59124 4.77328 4.81337 5.08889 5.19644 5.23671 5.29133 5.35694 5.55381 5.65121 5.72721 5.77686 6.03292 6.07602 6.62820 6.89377 7.35025 7.54888 7.65687 7.99391 8.30104 9.18614 10.80585 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.004232 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.573424 B = 6614.196888 C = 6810.319920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 N -0.449 5.449 4 C -0.046 4.046 5 C -0.025 4.025 6 N -0.447 5.447 7 C 0.202 3.798 8 C 0.057 3.943 9 H 0.146 0.854 10 C 0.224 3.776 11 N -0.396 5.396 12 C 0.376 3.624 13 O -0.376 6.376 14 C -0.178 4.178 15 S -0.071 6.071 16 C -0.534 4.534 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 -12.684 -15.042 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.029 4.029 3 N -0.132 5.132 4 C -0.179 4.179 5 C -0.175 4.175 6 N -0.164 5.164 7 C -0.061 4.061 8 C 0.031 3.969 9 H 0.163 0.837 10 C -0.095 4.095 11 N -0.072 5.072 12 C 0.241 3.759 13 O -0.241 6.241 14 C -0.327 4.327 15 S 0.157 5.843 16 C -0.682 4.682 17 H 0.093 0.907 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.195 0.805 30 H 0.190 0.810 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.154 -10.215 -14.267 19.791 hybrid contribution -1.008 -2.591 0.504 2.825 sum 8.146 -12.806 -13.762 20.488 Atomic orbital electron populations 1.22228 0.93348 1.03638 1.04092 1.21989 0.96277 0.79744 1.04909 1.45435 1.48653 1.12620 1.06534 1.22730 1.08489 0.94171 0.92480 1.22390 1.06609 0.97392 0.91076 1.70307 1.15870 1.18033 1.12165 1.21734 1.07313 0.88456 0.88610 1.17503 0.89053 1.04402 0.85949 0.83694 1.27599 0.93724 0.94215 0.93975 1.81196 1.10227 1.07387 1.08362 1.23579 0.81487 0.87186 0.83620 1.90516 1.60724 1.18868 1.53955 1.23988 1.02553 1.07176 0.98936 1.85393 1.39441 1.16179 1.43301 1.22804 1.22965 1.02867 1.19563 0.90695 1.24998 0.96170 0.94899 0.97437 1.70009 1.29732 1.10429 1.39987 0.86162 0.78690 0.79391 0.81239 1.20216 1.20732 1.19624 0.91463 0.90095 0.91163 0.88472 0.88808 0.80515 0.81017 0.88048 0.88232 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.09 0.53 6.41 -4.04 -0.03 0.51 16 3 N -0.45 -4.49 2.75 -113.91 -0.31 -4.80 16 4 C -0.05 -0.44 11.58 -16.56 -0.19 -0.63 16 5 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 6 N -0.45 -7.25 10.51 -10.82 -0.11 -7.37 16 7 C 0.20 2.74 6.07 -155.42 -0.94 1.80 16 8 C 0.06 0.73 2.83 -95.71 -0.27 0.46 16 9 H 0.15 1.13 6.85 -51.93 -0.36 0.78 16 10 C 0.22 3.33 14.61 -20.77 -0.30 3.02 16 11 N -0.40 -6.64 18.54 42.15 0.78 -5.85 16 12 C 0.38 6.42 6.24 -29.03 -0.18 6.24 16 13 O -0.38 -7.95 15.22 6.00 0.09 -7.86 16 14 C -0.18 -3.26 6.09 36.01 0.22 -3.04 16 15 S -0.07 -1.83 20.58 -107.50 -2.21 -4.04 16 16 C -0.53 -14.64 9.50 30.94 0.29 -14.34 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 20 Si 0.92 20.87 29.55 -169.99 -5.02 15.85 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.09 0.39 7.29 -51.93 -0.38 0.01 16 29 H 0.18 1.00 8.06 -52.48 -0.42 0.57 16 30 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.10 1.57 8.14 -51.91 -0.42 1.14 16 32 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 317.82 15.07 4.79 4.79 Total: -1.00 -36.69 317.82 -6.26 -42.94 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.66 Total: -3.58 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.33 Total: -5.23 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 1.09 Total: -42.86 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.09 Total: -7.86 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.21 Total: -4.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.69 -6.26 -42.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520036875.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.376 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds